View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_3 (Length: 605)
Name: NF0568_low_3
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 30 - 605
Target Start/End: Original strand, 33531514 - 33532089
Alignment:
| Q |
30 |
gggagttcccgagtttgaaccccgattgaaacaacttttggtccaacttaacttatctcccatccgaactccagattaccagggtcacttcccctcttaa |
129 |
Q |
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| T |
33531514 |
gggagttcccgagtttgaaccccgattgaaataacttttggtccgacttaacttatctcccatccgaactccagattaccagggtcacttcccctcttaa |
33531613 |
T |
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| Q |
130 |
ttcagaggattaagacaggtatactatttaattgagtgaagcatattaagttattcatcattaacaagtacctgaagtatattgtcgccaaacggctatg |
229 |
Q |
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| T |
33531614 |
ttcagaggattaagaaaggtatactatttaattgagtgaagcatattaagttattcatcattaacaagtacctgaagtatattgtcgccaaacggctatg |
33531713 |
T |
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| Q |
230 |
agctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaaccttcccaaaccaatcaaagcagcactcttgttacaa |
329 |
Q |
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| T |
33531714 |
agctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaaccttcccaaaccaatcaaagcagcactcttgttacaa |
33531813 |
T |
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| Q |
330 |
tgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcctcagaaaatcttccttgtttgtatgcttcatttcccattgatt |
429 |
Q |
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| T |
33531814 |
tgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcctcagaaaatcttccttgtttgtatgcttcatttcccattgatt |
33531913 |
T |
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| Q |
430 |
ttaacacctcagggtctagtattctgttgcttctaggacttcgaaattgtgacacaccatcaccacttttcctcattatattccccattacactgttatt |
529 |
Q |
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| T |
33531914 |
tcaacacctcagggtctagtattctgttgcttctaggacttcgaaattgtgacacaccatcaccacttttcctcattatattccccattacactgttatt |
33532013 |
T |
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| Q |
530 |
cacagaacatgacacagaattcaactctttattattccttgtaacacttgttcttgggctgctatagctactattc |
605 |
Q |
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| T |
33532014 |
cacagaacatgacacagaattcaactctttattattccttgtaacacttgttcttgggctgctatagctactattc |
33532089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 197 - 446
Target Start/End: Original strand, 26209619 - 26209868
Alignment:
| Q |
197 |
gtacctgaagtatattgtcgccaaacggctatgagctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaacctt |
296 |
Q |
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| T |
26209619 |
gtacctgaaatatattgttgccaaacgattgtgagctctgttataagaaggatccaaccgaatagattcctcacactcaataattgcttcttgaaacctt |
26209718 |
T |
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| Q |
297 |
cccaaaccaatcaaagcagcactcttgttacaatgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcctcagaaaatc |
396 |
Q |
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|| || |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||| |
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| T |
26209719 |
cctaatccaatcaaagcagcactcttattgcaatgataagttgccttatttgaatcaatagcaattgctttgtcatacaaagccaaagcctcttcaaact |
26209818 |
T |
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| Q |
397 |
ttccttgtttgtatgcttcatttcccattgattttaacacctcagggtct |
446 |
Q |
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| || | ||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
26209819 |
taccctttttgtatgcttcatttcccattgatttcaacacttcagggtct |
26209868 |
T |
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