View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_30 (Length: 308)
Name: NF0568_low_30
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 37808284 - 37807986
Alignment:
| Q |
1 |
tccctatcgacacaaagagcaacaacaatggcttgaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37808284 |
tccctatcgacacaaagagcaacaacaatggcttgaactgctcccattgagcacatcaatgctgagcatgaatgatggaatggatattcttcattcaact |
37808185 |
T |
|
| Q |
101 |
tagcctgtaaagctcaaacatcatattcacataaaatattcgaccttaat-aaggaatatggatataactaattaagctaacctggatgattaaccataa |
199 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37808184 |
tagcctgtaaacctcaaacatcatattcacaaaaaatattcgaccttaattaaggaatatggatataactaattaagctaacctggatgattaaccataa |
37808085 |
T |
|
| Q |
200 |
agaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgttttggatccataagcccattttggttcctatg |
298 |
Q |
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| T |
37808084 |
agaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgttttggatccataagcccattttggttcctatg |
37807986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 37782904 - 37782801
Alignment:
| Q |
4 |
ctatcgacacaaagagcaacaacaatggcttgaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttag |
103 |
Q |
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||||||| ||||||||||| |||||||||||||| ||| |||||| ||||| ||||||||||||||||| || |||| |||||||||||||||||| |
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| T |
37782904 |
ctatcgatacaaagagcaaaaacaatggcttgaatcgctgccattgtgcacaccaatgctgagcatgaattgtgttctggaaattcttcattcaacttag |
37782805 |
T |
|
| Q |
104 |
cctg |
107 |
Q |
| |
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|||| |
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| T |
37782804 |
cctg |
37782801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 37800756 - 37800634
Alignment:
| Q |
171 |
attaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgttttg |
270 |
Q |
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|||||||||||||| ||||| ||||||| ||||||| |||| |||| |||| |||||| |||| |||| || |||||||| ||||| ||||| | |
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| T |
37800756 |
attaagctaacctgaatgataaaccatagagaaaaaaagcagctgcttcctatagcacatagaacgcccaatagtttattactaaagtctgcatgttgcg |
37800657 |
T |
|
| Q |
271 |
gatccataagcccattttggttc |
293 |
Q |
| |
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| T |
37800656 |
gctccatatgcccattttggttc |
37800634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 37781479 - 37781415
Alignment:
| Q |
176 |
gctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacaccca |
240 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| ||| |||| |||||||||| ||||| |
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| T |
37781479 |
gctaacctggataattaaccacaaagaaaaagagcaacaacttcctatggcacatggaataccca |
37781415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 37801940 - 37801844
Alignment:
| Q |
10 |
acacaaagagcaacaacaatggcttgaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttagcct |
106 |
Q |
| |
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||||||| ||||| ||| |||||||||| ||||||||||| ||||||| || | || ||| ||||||| ||||||||||| ||||| ||||||| |
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| T |
37801940 |
acacaaatagcaaaaacgatggcttgaattgctcccattgtcgacatcaaagcagtgcttgagtgatggcttggatattctttattcattttagcct |
37801844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 37789917 - 37789794
Alignment:
| Q |
170 |
aattaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgtttt |
269 |
Q |
| |
|
||||||||||||||| ||||| ||||| | |||||||||||| |||| |||| ||| || ||| |||| || |||||||||||||| ||||| | |
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| T |
37789917 |
aattaagctaacctgaatgataaaccaaagagaaaaagagcagctgcttcctatggcatatagaaatcccaatagtttattactgaagtctgcatgttgt |
37789818 |
T |
|
| Q |
270 |
ggatccataagcccattttggttc |
293 |
Q |
| |
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| |||||| |||||||||||||| |
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| T |
37789817 |
agttccatatgcccattttggttc |
37789794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 37792248 - 37792161
Alignment:
| Q |
10 |
acacaaagagcaacaacaatggcttgaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattca |
97 |
Q |
| |
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||||||| ||||| ||| |||||||||| ||||||||||| ||||||| || | || ||| ||||||| ||||||||||| ||||| |
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| T |
37792248 |
acacaaatagcaaaaacgatggcttgaattgctcccattgtcgacatcaaagcagtgcttgagtgatggcttggatattctttattca |
37792161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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