View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0568_low_31 (Length: 295)

Name: NF0568_low_31
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0568_low_31
NF0568_low_31
[»] chr5 (9 HSPs)
chr5 (30-240)||(10101927-10102137)
chr5 (33-202)||(10213973-10214138)
chr5 (33-236)||(10101424-10101621)
chr5 (33-154)||(9661669-9661790)
chr5 (206-282)||(10101831-10101907)
chr5 (33-154)||(12110144-12110265)
chr5 (33-77)||(9659849-9659893)
chr5 (139-236)||(9678343-9678436)
chr5 (93-144)||(14816398-14816449)
[»] chr4 (1 HSPs)
chr4 (108-151)||(8472547-8472590)
[»] chr2 (1 HSPs)
chr2 (111-156)||(6774724-6774769)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 10102137 - 10101927
Alignment:
Q  30 tttaaaagcatgtaacttttaatgaaaaacttcatacgataacttgaatcacggtgaatttgtcgaaataacggtggaactgtgatgttgttgatgctac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10102137 tttaaaagcatgtaacttttaatgaaaaacttcatacgataacttaaatcacggtgaatttgtcgaaataacggtggaactgtgatgttgttgatgctac 10102038  T
Q  130 gaagtgtagcttttgccaaaatcacaatggctcgccgtgatttcactcgcctagttcatcgtcaatttaaacatgcactaaagtgttaactgctgctaac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10102037 gaagtgtagcttttgccaaaatcacaatggctcgccgtgatttcactcgcctagttcatcgtcaatttaaacatgcactaaagtgttaactgctgctaac 10101938  T
Q  230 taccacttaaa 240  Q
    |||||||||||    
T  10101937 taccacttaaa 10101927  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 33 - 202
Target Start/End: Original strand, 10213973 - 10214138
Alignment:
Q  33 aaaagcatgtaacttttaatgaaaaacttcatacgataacttgaatcacggtgaatttgtcgaaataacggtggaactgtgatgttgttgatgctacgaa 132  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| | | ||||||| |||| || ||||||||||||||||||| ||    
T  10213973 aaaagcatgtaacttttaatgaaaaccttcatacgataacttgaaccacagtgaattcgacaaaataactgtggcaccgtgatgttgttgatgctacaaa 10214072  T
Q  133 gtgtagcttttgccaaaatcacaatggctcgccgtgatttcactcgcctagttcatcgtcaatttaaaca 202  Q
    ||||||||||||||||||||||||||||| || |||||||     ||||||||||||||| ||| |||||    
T  10214073 gtgtagcttttgccaaaatcacaatggcttgcggtgatttt----gcctagttcatcgtcgattcaaaca 10214138  T

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Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 10101621 - 10101424
Alignment:
Q  33 aaaagcatgtaacttttaatgaaaaacttcatacgataacttgaatcacggtgaatttgtcgaaataacggtggaactgtgatgttgttgatgctacgaa 132  Q
    ||||||||| ||||||||||||||| |||||||| ||||| ||||| || ||||||||| |||||||||| ||| || ||||||||||| ||||||| ||    
T  10101621 aaaagcatgcaacttttaatgaaaaccttcatacaataacatgaat-acagtgaatttgacgaaataacgatggcaccgtgatgttgtt-atgctacaaa 10101524  T
Q  133 gtgtagcttttgccaaaatcacaatggctcgccgtgatttcactcgcctagttcatcgtcaatttaaacatgcactaaagtgttaactgctgctaactac 232  Q
    |||||||||||||||| |||||||||||| ||||||||||     ||||| ||||||||  ||| |||||  ||||||||| ||| ||||||||||| ||    
T  10101523 gtgtagcttttgccaagatcacaatggcttgccgtgatttt----gcctaattcatcgttgattcaaacacacactaaagtattatctgctgctaacaac 10101428  T

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Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 9661669 - 9661790
Alignment:
Q  33 aaaagcatgtaacttttaatgaaaaacttcatacgataacttgaatcacggtgaatttgtcgaaataacggtggaactgtgatgttgttgatgctacgaa 132  Q
    ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| || ||||| || |||||||||||||| |||  ||    
T  9661669 aaaagcatgcaacttttattgaaaaccttcatacgataacttgaatcacggtgaatttgacgaaacaaaggtggcaccgtgatgttgttgattctataaa 9661768  T
Q  133 gtgtagcttttgccaaaatcac 154  Q
    |||| | |||||||||||||||    
T  9661769 gtgtggtttttgccaaaatcac 9661790  T

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Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 10101907 - 10101831
Alignment:
Q  206 actaaagtgttaactgctgctaactaccacttaaagtgaaagatgaacaaggtgatcgatttaaatttctcagagaa 282  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10101907 actaaagtgttagctgctgctaactaccacttaaagtgaaagatgaacaaggtgatcgatttaactttctcagagaa 10101831  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 12110144 - 12110265
Alignment:
Q  33 aaaagcatgtaacttttaatgaaaaacttcatacgataacttgaatcacggtgaatttgtcgaaataacggtggaactgtgatgttgttgatgctacgaa 132  Q
    ||||||||| |||||||| |||||| ||||||||  ||||||||||||||||||||||  ||||| || ||||| ||||||||||||||||| |||| ||    
T  12110144 aaaagcatgcaacttttattgaaaaccttcatacagtaacttgaatcacggtgaatttaacgaaacaaaggtggcactgtgatgttgttgattctacaaa 12110243  T
Q  133 gtgtagcttttgccaaaatcac 154  Q
    ||| || ||||| |||||||||    
T  12110244 gtgaagtttttgtcaaaatcac 12110265  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 9659849 - 9659893
Alignment:
Q  33 aaaagcatgtaacttttaatgaaaaacttcatacgataacttgaa 77  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||    
T  9659849 aaaagcatgcaacttttaatgaaaatcttcatacgataacttgaa 9659893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 9678343 - 9678436
Alignment:
Q  139 cttttgccaaaatcacaatggctcgccgtgatttcactcgcctagttcatcgtcaatttaaacatgcactaaagtgttaactgctgctaactaccact 236  Q
    ||||| |||||||||   |||||||| ||||||||||    ||||||||  ||||||| |||||||||||||||| ||| |  |||||||||||||||    
T  9678343 ctttttccaaaatcatggtggctcgcggtgatttcac----ctagttcagtgtcaattcaaacatgcactaaagtattagccactgctaactaccact 9678436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 14816449 - 14816398
Alignment:
Q  93 cgaaataacggtggaactgtgatgttgttgatgctacgaagtgtagcttttg 144  Q
    |||||| |||||||||| ||||| ||||||| ||| ||||||||||||||||    
T  14816449 cgaaatcacggtggaaccgtgattttgttgaagctccgaagtgtagcttttg 14816398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 8472590 - 8472547
Alignment:
Q  108 actgtgatgttgttgatgctacgaagtgtagcttttgccaaaat 151  Q
    |||||||| ||||||| ||||| |||||||||||||||||||||    
T  8472590 actgtgattttgttgaagctacaaagtgtagcttttgccaaaat 8472547  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 6774724 - 6774769
Alignment:
Q  111 gtgatgttgttgatgctacgaagtgtagcttttgccaaaatcacaa 156  Q
    ||||| ||||||| ||| ||||||||||||||||| ||||||||||    
T  6774724 gtgattttgttgaagctccgaagtgtagcttttgctaaaatcacaa 6774769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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