View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0568_low_34 (Length: 286)
Name: NF0568_low_34
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-150; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 10601918 - 10601643
Alignment:
| Q |
1 |
cacttcatcattctttatagaaggacttttatccttcacctcctcattattcatctcagaaattccattgtgtctatcaattgcctctctcaacaattcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10601918 |
cacttcatcattctttatagaaggacttttatccttcacctcctcattattcatctcagaaattccattgtgtctatcaattgcctctctcaacaattcc |
10601819 |
T |
|
| Q |
101 |
tctgcgacattatcatattttcgcccaccctttttcttctctttctctttaccatcattatcagaagaactatcgtcatcattgtcagaaatctcattca |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10601818 |
tctgcgacattatcgtattttcgcccaccctttttcttctctttctccttaccatcattatcagaagaactatcgtcatcattgtcagaaatctcattca |
10601719 |
T |
|
| Q |
201 |
gctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatcagaatcaaaacagtgttcttcatc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10601718 |
gctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatcagaatcaaaacagtgttcttcatc |
10601643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 253
Target Start/End: Original strand, 16824335 - 16824426
Alignment:
| Q |
162 |
cagaagaactatcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatca |
253 |
Q |
| |
|
|||||||||| || |||||| | |||||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16824335 |
cagaagaactttcatcatcactttcagaaatctcattcacctcatccaccataaaatcctcatcactagtctcattttcttcactttcatca |
16824426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 16968759 - 16968848
Alignment:
| Q |
163 |
agaagaactatcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatc |
252 |
Q |
| |
|
||||||| | || ||||||||| || |||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
16968759 |
agaagaattgtcatcatcattgccaaaaatctcattcatctcatcaaccctaaaatcctcatcactggtctcattttcttcactttcatc |
16968848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 17008111 - 17008180
Alignment:
| Q |
161 |
tcagaagaactatcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctag |
230 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| |||||| ||||||| ||||| |||| |
|
|
| T |
17008111 |
tcagaagaactgtcatcatcattgtcagaaatctcattcagctcctcaactttaaaatcttcatcactag |
17008180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 16992522 - 16992609
Alignment:
| Q |
172 |
atcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatcagaatca |
259 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||| |||||| ||||| |||| |||||| ||||||| | ||| |||||| |
|
|
| T |
16992522 |
atcgtcatcattgtctgaaatctcattcggctcatcaacttcaaaatcttcatcactagaatcatttgcttcactcttatccgaatca |
16992609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 16968604 - 16968661
Alignment:
| Q |
35 |
ttcacctcctcattattcatctcagaaattccattgtgtctatcaattgcctctctca |
92 |
Q |
| |
|
|||||||| |||| |||| |||||||||||||| | |||||||| ||| ||||||||| |
|
|
| T |
16968604 |
ttcacctcttcatcattcctctcagaaattccactttgtctatccattacctctctca |
16968661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 16977768 - 16977812
Alignment:
| Q |
4 |
ttcatcattctttatagaaggacttttatccttcacctcctcatt |
48 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||| ||||||||| |
|
|
| T |
16977768 |
ttcaccattgtttacagaaggacttttatccttcatctcctcatt |
16977812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 35262774 - 35262691
Alignment:
| Q |
176 |
tcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatcagaatca |
259 |
Q |
| |
|
|||| |||||| ||||| |||||||| ||||||||| |||||| ||||| |||| |||||||||||||| |||||||||||| |
|
|
| T |
35262774 |
tcatgattgtctgaaatttcattcagttcatcaactgcaaaatcttcatcactagagtcattttcttcactctcatcagaatca |
35262691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3029 times since January 2019
Visitors: 3831