View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_37 (Length: 269)
Name: NF0568_low_37
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 37808486 - 37808261
Alignment:
| Q |
30 |
acaataccctgcattaacattcacatacatttaacaacttcaataacaacaattttggtaaacaaaatagttcatgttgagcatttacggcatatgcatt |
129 |
Q |
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| T |
37808486 |
acaataccctgcattaacattcacatacatttaacaacttcaataacaacaattttggtaaacaaaatagttcatgttgagcatttacggcatatgcatt |
37808387 |
T |
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| Q |
130 |
gactaacaatgtatatgaattaaattcttaaatttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtcc |
229 |
Q |
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| T |
37808386 |
gactaacaatgtatatgaattaaattcttaaatttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtcc |
37808287 |
T |
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| Q |
230 |
aatccctatcgacacaaagagcaaca |
255 |
Q |
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| T |
37808286 |
aatccctatcgacacaaagagcaaca |
37808261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 37782973 - 37782886
Alignment:
| Q |
166 |
tacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaa |
253 |
Q |
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| T |
37782973 |
tacgagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaa |
37782886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 253
Target Start/End: Complemental strand, 37792331 - 37792236
Alignment:
| Q |
158 |
taaatttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaa |
253 |
Q |
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| T |
37792331 |
taaagttgtatgagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaa |
37792236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 37802012 - 37801928
Alignment:
| Q |
169 |
gagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaa |
253 |
Q |
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| T |
37802012 |
gagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaa |
37801928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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