View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0568_low_4 (Length: 573)
Name: NF0568_low_4
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 29569124 - 29568914
Alignment:
| Q |
29 |
atgaatgttccgagttgtgagatggtaaaaaatttcaatagccttgttcaatgtccgtgtccttttaacatcaatt-agagttgtggacagaaggggcaa |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29569124 |
atgaatgttccgagttgtgagatggtaaaaaatttcaatagccttgttcaatgtccgtgtccttttaacatcaatttagagttgtggacagaaggggcaa |
29569025 |
T |
|
| Q |
128 |
aaagattcatgaccagctagaatccattttggttcaagttgtatatctctcaaatacaaatcatgtaaaatttcttttcttttaaacattttgattggat |
227 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569024 |
aaagattcatgaccagccagaatccattttggttcaagttgtatatctctcaaatacaaagcatgtaaaatttcttttcttttaaacattttgattggat |
29568925 |
T |
|
| Q |
228 |
tttgaggacag |
238 |
Q |
| |
|
||||||||||| |
|
|
| T |
29568924 |
tttgaggacag |
29568914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 348 - 488
Target Start/End: Complemental strand, 29568821 - 29568681
Alignment:
| Q |
348 |
atgtgtaactgtaaacaaacaaactctcccaagtcccaaccaacctcccaaaatcagttacacttgaaaacctcaacaaatcttcgtatcctctaaagtt |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29568821 |
atgtgtaactgtaaacaaacaaactctcccaagtcccaaccaacctcccaaaatcagttacacttgaaaacctcaacaaatcttcatatcctctaaagtt |
29568722 |
T |
|
| Q |
448 |
caacatttttataactttgccactcacacttactttacaac |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29568721 |
caacatttttataactttgccactcacacttactttacaac |
29568681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 363 - 485
Target Start/End: Complemental strand, 29570110 - 29569992
Alignment:
| Q |
363 |
caaacaaactctcccaagtcccaaccaacctcccaaaatcagttacacttgaaaacctcaacaaatcttcgtatcctctaaagttcaacatttttataac |
462 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| ||||||||||||||||| | |||||||| |
|
|
| T |
29570110 |
caaacaaactctcccaagtcccaaccaacttaccaaaatcagttacac----aaacctcaacaaatcttcatatcctctaaagttcaaaaaatttataac |
29570015 |
T |
|
| Q |
463 |
tttgccactcacacttactttac |
485 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
29570014 |
tttgccactcacactaactttac |
29569992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 110 - 235
Target Start/End: Original strand, 1757581 - 1757698
Alignment:
| Q |
110 |
tgtggacagaaggggcaaaaagattcatgaccagctagaatccattttggttcaagttgtatatctctcaaatacaaatcatgtaaaatttcttttcttt |
209 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||| || | ||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
1757581 |
tgtggacagaaggggcaaaaaatgtcatgaccagccagaatccattttgatt-------tgtatctctcaaa-acaaattatgtaaaacttcttttcttc |
1757672 |
T |
|
| Q |
210 |
taaacattttgattggattttgagga |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1757673 |
taaacattttgattggattttgagga |
1757698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 27918394 - 27918461
Alignment:
| Q |
141 |
cagctagaatccattttggttcaagttgtatatct--ctcaaatacaaatcatgtaaaatttcttttc |
206 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||| || ||||||||||||||||||| |||||||| |
|
|
| T |
27918394 |
cagccagaatccatttaggttcaagttgtatctctcacttaaatacaaatcatgtaaaacttcttttc |
27918461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 349
Target Start/End: Complemental strand, 29568865 - 29568835
Alignment:
| Q |
319 |
gagattgatgtgattatttggttgagcttat |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
29568865 |
gagattgatgtgattatttggttgagcttat |
29568835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 27918304 - 27918362
Alignment:
| Q |
29 |
atgaatgttccgagttgtgagatggtaaaaaa---tttcaatagccttgttcaatgtcc |
84 |
Q |
| |
|
||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
27918304 |
atgaatgttccaagttgtgatgtggtaaaaatatctttcaatagccttgttcaatgtcc |
27918362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 27481553 - 27481675
Alignment:
| Q |
110 |
tgtggacagaaggggcaaaaagattcatgaccagctagaa-tccattttggttcaagttgtatatctctcaaatacaaatcatgtaaaatttcttttctt |
208 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||| |||||||||||| | |||||||||||||||||| |||||||| |||||||| | |
|
|
| T |
27481553 |
tgtggacagaaggggcaaaaattgtcatgaccagccagaaatccattttggtt-------tgtatctctcaaatacaaattatgtaaaacttcttttcct |
27481645 |
T |
|
| Q |
209 |
ttaaacattttgattggattttgaggacag |
238 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |
|
|
| T |
27481646 |
ttaaacattttgattagattttaaggacag |
27481675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 27461533 - 27461635
Alignment:
| Q |
113 |
ggacagaaggggcaaaaagattcatgaccagctagaa-tccattttggttcaagttgtatatctctcaaatacaaatcatgtaaaatttcttttctttta |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
27461533 |
ggacagaaggggcaaaaaatgtcatgaccagctagaaatccattttggtt-------tgtatctctcaaatacaaattatgtaaaacttcttttctttta |
27461625 |
T |
|
| Q |
212 |
aacattttga |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
27461626 |
aacattttga |
27461635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 27521820 - 27521753
Alignment:
| Q |
171 |
tatctctcaaatacaaatcatgtaaaatttcttttcttttaaacattttgattggattttgaggacag |
238 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
27521820 |
tatctctcaaatacaaattatgtaaaacttattttcttttaaacattttgatttgattttgaagacag |
27521753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2052 times since January 2019
Visitors: 3811