View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_41 (Length: 266)
Name: NF0568_low_41
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 10101698 - 10101440
Alignment:
| Q |
1 |
ttcaagtggaaggagacaactgatagaatttaaaaacgaggcaaacaattcatgctaaggggaaaagtaatactttaaaaagcatgcaacttttaatgaa |
100 |
Q |
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| T |
10101698 |
ttcaagtggaaggagacaactgatagaatttgaaaacgaggcgaacaattcattctaaggggaaaagcaatactttaaaaagcatgcaacttttaatgaa |
10101599 |
T |
|
| Q |
101 |
aaccttcatacaataacatgaatacagtgaatttgacgaaataacgatggcaccatgatgttgttatgctacaaagtgtagcttttgccaagatcacaat |
200 |
Q |
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| T |
10101598 |
aaccttcatacaataacatgaatacagtgaatttgacgaaataacgatggcaccgtgatgttgttatgctacaaagtgtagcttttgccaagatcacaat |
10101499 |
T |
|
| Q |
201 |
ggcttgccgtgattttgcctaattcatcgttgattcaaacacacactaaagtataatct |
259 |
Q |
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| T |
10101498 |
ggcttgccgtgattttgcctaattcatcgttgattcaaacacacactaaagtattatct |
10101440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 10213950 - 10214140
Alignment:
| Q |
55 |
ctaaggggaaaagtaatactttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaat-acagtgaatttgacgaaataacgatggcac |
153 |
Q |
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| T |
10213950 |
ctaaggtgaaaagcaatattttgaaaagcatgtaacttttaatgaaaaccttcatacgataacttgaaccacagtgaattcgacaaaataactgtggcac |
10214049 |
T |
|
| Q |
154 |
catgatgttgtt-atgctacaaagtgtagcttttgccaagatcacaatggcttgccgtgattttgcctaattcatcgttgattcaaacaca |
243 |
Q |
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| T |
10214050 |
cgtgatgttgttgatgctacaaagtgtagcttttgccaaaatcacaatggcttgcggtgattttgcctagttcatcgtcgattcaaacaca |
10214140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 215
Target Start/End: Complemental strand, 10102144 - 10101995
Alignment:
| Q |
68 |
taatactttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaat-acagtgaatttgacgaaataacgatggcaccatgatgttgtt- |
165 |
Q |
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| T |
10102144 |
taatatttttaaaagcatgtaacttttaatgaaaaacttcatacgataacttaaatcacggtgaatttgtcgaaataacggtggaactgtgatgttgttg |
10102045 |
T |
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| Q |
166 |
atgctacaaagtgtagcttttgccaagatcacaatggcttgccgtgattt |
215 |
Q |
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| T |
10102044 |
atgctacgaagtgtagcttttgccaaaatcacaatggctcgccgtgattt |
10101995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 9661646 - 9661790
Alignment:
| Q |
55 |
ctaaggggaaaagtaatactttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaat-acagtgaatttgacgaaataacgatggcac |
153 |
Q |
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| T |
9661646 |
ctaaggtgaaaagtaatattttaaaaagcatgcaacttttattgaaaaccttcatacgataacttgaatcacggtgaatttgacgaaacaaaggtggcac |
9661745 |
T |
|
| Q |
154 |
catgatgttgtt-atgctacaaagtgtagcttttgccaagatcac |
197 |
Q |
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| T |
9661746 |
cgtgatgttgttgattctataaagtgtggtttttgccaaaatcac |
9661790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 230
Target Start/End: Original strand, 12110134 - 12110297
Alignment:
| Q |
68 |
taatactttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaat-acagtgaatttgacgaaataacgatggcaccatgatgttgtt- |
165 |
Q |
| |
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| T |
12110134 |
taatattttaaaaagcatgcaacttttattgaaaaccttcatacagtaacttgaatcacggtgaatttaacgaaacaaaggtggcactgtgatgttgttg |
12110233 |
T |
|
| Q |
166 |
atgctacaaagtgtagcttttgccaagatcacaatggcttgccgtgattttgcctaattcatcgt |
230 |
Q |
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| T |
12110234 |
attctacaaagtgaagtttttgtcaaaatcaccttggctccccg-gattttgcctagttcgtcgt |
12110297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 9659844 - 9659893
Alignment:
| Q |
73 |
ctttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaa |
122 |
Q |
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| T |
9659844 |
ctttaaaaagcatgcaacttttaatgaaaatcttcatacgataacttgaa |
9659893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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