View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_42 (Length: 265)
Name: NF0568_low_42
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_42 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 265
Target Start/End: Complemental strand, 11484293 - 11484034
Alignment:
| Q |
5 |
aaggagcagagactcaagaagactttgatatgaatgaattgaaaatgataacagtactgtttttgggtggttggcaatgcatatggttggatgaatgaat |
104 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11484293 |
aaggagcaaagactcaagaagacttggatatgaatgaattgataatgataacagtactatttttgggtggttggcaatgcatatagttggatgaatgaat |
11484194 |
T |
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| Q |
105 |
agtagtcataataattgtatctacatctgacaaaataataattatacaaagaaaagttgcacaattttcatctttgaagtttcaatgatagataaattct |
204 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
11484193 |
agtagtaataataattgtatctacatctgacaaaataataaatatacaaagaaaagttgcacaattttcatctttgaagtttcaactataaataaattct |
11484094 |
T |
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| Q |
205 |
agcgtgtggaccaatgcaatgaatgatcaattatgtatggatgaaaatttttagaaatttc |
265 |
Q |
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|||||||||||||||||||||||||||| || | ||| |||||||||| ||||||||||| |
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| T |
11484093 |
agcgtgtggaccaatgcaatgaatgatcgatcaattat-gatgaaaattgttagaaatttc |
11484034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 26798377 - 26798336
Alignment:
| Q |
125 |
ctacatctgacaaaataataattatacaaagaaaagttgcac |
166 |
Q |
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| T |
26798377 |
ctacatctgacaaaataataaatatacaaagaaatgttgcac |
26798336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 26801285 - 26801252
Alignment:
| Q |
125 |
ctacatctgacaaaataataattatacaaagaaa |
158 |
Q |
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| T |
26801285 |
ctacatctgacaaaataataaatatacaaagaaa |
26801252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 26808835 - 26808802
Alignment:
| Q |
125 |
ctacatctgacaaaataataattatacaaagaaa |
158 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
26808835 |
ctacatctgacaaaataataaatatacaaagaaa |
26808802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 26816225 - 26816192
Alignment:
| Q |
125 |
ctacatctgacaaaataataattatacaaagaaa |
158 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
26816225 |
ctacatctgacaaaataataaatatacaaagaaa |
26816192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 26823862 - 26823829
Alignment:
| Q |
125 |
ctacatctgacaaaataataattatacaaagaaa |
158 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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|
| T |
26823862 |
ctacatctgacaaaataataaatatacaaagaaa |
26823829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 10218906 - 10218865
Alignment:
| Q |
125 |
ctacatctgacaaaataataattatacaaagaaaagttgcac |
166 |
Q |
| |
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||||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
10218906 |
ctacatctgacaaaataataaatatacaaagaaatgttgcac |
10218865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 10255815 - 10255774
Alignment:
| Q |
125 |
ctacatctgacaaaataataattatacaaagaaaagttgcac |
166 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
10255815 |
ctacatctgacaaaataataaatatacaaagaaatgttgcac |
10255774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 10227908 - 10227875
Alignment:
| Q |
125 |
ctacatctgacaaaataataattatacaaagaaa |
158 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
10227908 |
ctacatctgacaaaataataaatatacaaagaaa |
10227875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 10499780 - 10499740
Alignment:
| Q |
127 |
acatctgacaaaataataattatacaaagaaaagttgcaca |
167 |
Q |
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||||||||| ||||||||| |||||||||||||||| |||| |
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| T |
10499780 |
acatctgactaaataataaatatacaaagaaaagtttcaca |
10499740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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