View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0568_low_46 (Length: 256)
Name: NF0568_low_46
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_46 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 28 - 256
Target Start/End: Complemental strand, 31188616 - 31188394
Alignment:
| Q |
28 |
caaaaattgggatatataaaaatacaatggaccaagtatcagaatctcaatccagaaatggacctataagaaacgtgattgacggctagacatggccaca |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31188616 |
caaaaattgggatatataaaaatacaatggaccaagtatcagaatctcaatccagaaatggacctataagaaacgtgattgacggctagacatggccaca |
31188517 |
T |
|
| Q |
128 |
aaataaacaagtcttagccatatcccatctaaatctaatccaaccaacaaatttatacatgcataatcaaagagagagaattaaaaatatgtaactcttg |
227 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31188516 |
aaataaacaagtcttagccatattcc------atctaatccaaccaacaaatttatacatgcataatcaaagagagagaattaaaaatatgtaactcttg |
31188423 |
T |
|
| Q |
228 |
accatgatgacaccgcaactatactcata |
256 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31188422 |
accatgatgacaccgcaactatactcata |
31188394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 452 times since January 2019
Visitors: 3834