View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0568_low_48 (Length: 253)

Name: NF0568_low_48
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0568_low_48
NF0568_low_48
[»] chr4 (13 HSPs)
chr4 (16-225)||(14016917-14017124)
chr4 (17-142)||(6207183-6207306)
chr4 (16-63)||(2654038-2654085)
chr4 (155-210)||(14272831-14272886)
chr4 (75-142)||(14449280-14449347)
chr4 (16-63)||(21871463-21871510)
chr4 (16-63)||(21927324-21927371)
chr4 (16-63)||(43074672-43074719)
chr4 (16-63)||(50769547-50769593)
chr4 (17-63)||(3658109-3658155)
chr4 (16-142)||(35393852-35393976)
chr4 (102-152)||(43074613-43074663)
chr4 (75-128)||(53312526-53312578)
[»] chr5 (13 HSPs)
chr5 (16-142)||(3999093-3999216)
chr5 (16-155)||(40276012-40276149)
chr5 (16-142)||(3333699-3333822)
chr5 (16-63)||(6130338-6130385)
chr5 (16-63)||(19340844-19340891)
chr5 (16-63)||(21066523-21066570)
chr5 (16-63)||(32391802-32391849)
chr5 (85-142)||(20629743-20629800)
chr5 (16-63)||(22300795-22300842)
chr5 (75-142)||(25910966-25911032)
chr5 (72-124)||(16132966-16133019)
chr5 (16-63)||(18403174-18403222)
chr5 (19-63)||(36798362-36798406)
[»] scaffold0062 (1 HSPs)
scaffold0062 (75-153)||(46072-46150)
[»] chr1 (8 HSPs)
chr1 (16-142)||(23891667-23891790)
chr1 (85-136)||(1096700-1096751)
chr1 (16-63)||(6320765-6320811)
chr1 (20-63)||(45739123-45739166)
chr1 (16-151)||(39642198-39642331)
chr1 (75-155)||(3377495-3377575)
chr1 (16-60)||(6569613-6569657)
chr1 (16-63)||(41997723-41997771)
[»] chr7 (12 HSPs)
chr7 (75-153)||(28350112-28350190)
chr7 (16-63)||(35250303-35250350)
chr7 (85-142)||(8074125-8074182)
chr7 (16-153)||(4049905-4050039)
chr7 (16-136)||(5172707-5172826)
chr7 (18-136)||(20185102-20185216)
chr7 (85-153)||(17876407-17876475)
chr7 (16-63)||(15348141-15348187)
chr7 (85-142)||(28785763-28785820)
chr7 (85-142)||(41243894-41243951)
chr7 (75-151)||(46266493-46266569)
chr7 (74-142)||(47909701-47909768)
[»] chr3 (22 HSPs)
chr3 (84-142)||(38958092-38958150)
chr3 (16-142)||(14856553-14856677)
chr3 (19-63)||(4474256-4474300)
chr3 (16-125)||(43747303-43747409)
chr3 (72-142)||(53184755-53184824)
chr3 (16-60)||(25902488-25902532)
chr3 (85-141)||(38178703-38178759)
chr3 (16-60)||(44585874-44585918)
chr3 (87-142)||(14349360-14349415)
chr3 (16-63)||(44436472-44436519)
chr3 (16-63)||(54719074-54719121)
chr3 (75-153)||(17773166-17773244)
chr3 (75-153)||(19074467-19074545)
chr3 (17-63)||(25154365-25154411)
chr3 (85-135)||(54464414-54464464)
chr3 (85-142)||(3193031-3193088)
chr3 (75-136)||(14340746-14340807)
chr3 (85-142)||(33329618-33329675)
chr3 (87-136)||(53020541-53020590)
chr3 (84-128)||(19404419-19404463)
chr3 (86-142)||(28204487-28204543)
chr3 (86-142)||(46226938-46226994)
[»] chr8 (10 HSPs)
chr8 (75-152)||(37813159-37813236)
chr8 (21-152)||(41487197-41487326)
chr8 (75-128)||(26824072-26824125)
chr8 (75-150)||(16982625-16982700)
chr8 (16-63)||(30539072-30539119)
chr8 (16-63)||(35213112-35213159)
chr8 (16-63)||(39889854-39889901)
chr8 (16-63)||(44101373-44101420)
chr8 (85-142)||(22192309-22192366)
chr8 (87-148)||(33298585-33298646)
[»] chr6 (3 HSPs)
chr6 (16-63)||(33401238-33401285)
chr6 (17-63)||(10727274-10727320)
chr6 (75-151)||(12766455-12766530)
[»] scaffold0809 (1 HSPs)
scaffold0809 (16-136)||(2765-2883)
[»] chr2 (11 HSPs)
chr2 (16-142)||(15023022-15023145)
chr2 (89-141)||(16043279-16043331)
chr2 (16-63)||(4576627-4576673)
chr2 (75-138)||(5362186-5362249)
chr2 (20-63)||(6510187-6510230)
chr2 (16-63)||(19206224-19206271)
chr2 (75-142)||(34761100-34761167)
chr2 (16-63)||(39918625-39918672)
chr2 (85-139)||(37803382-37803436)
chr2 (85-142)||(31827781-31827838)
chr2 (74-142)||(14489451-14489517)
[»] scaffold0016 (1 HSPs)
scaffold0016 (85-142)||(203425-203480)
[»] scaffold1458 (1 HSPs)
scaffold1458 (74-142)||(1478-1546)
[»] scaffold0515 (1 HSPs)
scaffold0515 (74-142)||(3646-3714)
[»] scaffold0306 (1 HSPs)
scaffold0306 (74-142)||(3646-3714)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 14016917 - 14017124
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttc 115  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||||||       ||||||| ||||||||||||||| ||| | ||||||||||||||    
T  14016917 accaaaaattggccttgggggaccgaaactgctacagttgcaaaacttcaggggg-caattttatagtgttttttcttaaggg-tcaaaatcgtaatttc 14017014  T
Q  116 gtgaaagttagggagcgaaaattgctaccaagcctttagactaatatattggtctaaaatatgattatgaacctttgggccttgcccttgttggattttt 215  Q
    |||||||||| || | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14017015 gtgaaagttaaggggtgaaaattgctatcaagcctttagactaatatattggtctaaaatatgattatgaacctttgggccttgcccttgttggattttt 14017114  T
Q  216 gtatataaat 225  Q
    ||||||||||    
T  14017115 gtatataaat 14017124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 6207306 - 6207183
Alignment:
Q  17 ccaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttcg 116  Q
    ||||||||||||||||||| ||| |||||||||| |||| |||||||        || ||||||||| |||||||||||| |   ||||||  || ||||    
T  6207306 ccaaaaattggtcttggggagccaaaactgctacagttgtaaaactt--atggggcagttttgtagttttttttcttaggagtccaaaatcacaacttcg 6207209  T
Q  117 tgaaagttagggagcgaaaattgcta 142  Q
      |||||||||||||||||| |||||    
T  6207208 ctaaagttagggagcgaaaactgcta 6207183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 2654085 - 2654038
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||||||||  |||||||||| |||||||||| ||||||||||||    
T  2654085 accaaaaattggctttggggggccaaaactgctacagttgcaaaactt 2654038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 14272831 - 14272886
Alignment:
Q  155 actaatatattggtctaaaatatgattatgaacctttgggccttgcccttgttgga 210  Q
    ||||||| || | ||||||| | |||| ||||||||||||||||||||||||||||    
T  14272831 actaatacatggctctaaaacaagattctgaacctttgggccttgcccttgttgga 14272886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 14449347 - 14449280
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||  ||||||||||||||  ||||||  || |||||||||||||||| ||||||| |||||    
T  14449347 ttttgtagttgtttttcttagggggccaaaatctcaacttcgtgaaagttagggggcgaaaactgcta 14449280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 21871510 - 21871463
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||||||||| |||| ||||| |||||||||| ||||||||||||    
T  21871510 accaaaaattggttttggagggccaaaactgctacagttgcaaaactt 21871463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 21927371 - 21927324
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||||||||| |||| ||||| |||||||||| ||||||||||||    
T  21927371 accaaaaattggttttggagggccaaaactgctacagttgcaaaactt 21927324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 43074719 - 43074672
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||||||||  |||||||||| |||||||||| ||||||||||||    
T  43074719 accaaaaattggcattggggggccaaaactgctacagttgcaaaactt 43074672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 50769547 - 50769593
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||||||||||||||||| || |||||||||| ||||||||||||    
T  50769547 accaaaaattggtcttggggg-ccaaaactgctacagttgcaaaactt 50769593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 3658109 - 3658155
Alignment:
Q  17 ccaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||||||    
T  3658109 ccaaaaattggccttggggagccaaaactgctacagttgcaaaactt 3658155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 35393852 - 35393976
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttc 115  Q
    |||||||||||| ||||||||||| |||||||||| ||| ||||||  |       |  ||||||||| ||||||||||| ||   ||||||| || |||    
T  35393852 accaaaaattggccttggggggccaaaactgctacagttacaaaac--ctagggggcggttttgtagttttttttcttagaggtccaaaatcgcaacttc 35393949  T
Q  116 gtgaaagttagggagcgaaaattgcta 142  Q
    ||||||||||||| | ||||| |||||    
T  35393950 gtgaaagttagggggtgaaaactgcta 35393976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 43074663 - 43074613
Alignment:
Q  102 aaaatcgtaatttcgtgaaagttagggagcgaaaattgctaccaagccttt 152  Q
    ||||||| || |||||||||||||||| |||||||||||||  ||||||||    
T  43074663 aaaatcgcaacttcgtgaaagttagggggcgaaaattgctattaagccttt 43074613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 53312526 - 53312578
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttaggg 128  Q
    ||||||||| ||||||||||| |||| ||||||| || ||||||||||||||||    
T  53312526 ttttgtagt-ttttttcttagtgggtcaaaatcgcaacttcgtgaaagttaggg 53312578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 3999216 - 3999093
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttc 115  Q
    |||||||||||| |||| |||||| |||||||||| ||||||||||||        | |||||||||| |||||||||||||||| ||||||| || |||    
T  3999216 accaaaaattggccttgaggggccaaaactgctacagttgcaaaactt--ataagtcgattttgtagt-ttttttcttagggggtcaaaatcgcaacttc 3999120  T
Q  116 gtgaaagttagggagcgaaaattgcta 142  Q
    ||||||||||||| ||||||| |||||    
T  3999119 gtgaaagttagggggcgaaaactgcta 3999093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 40276149 - 40276012
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttc 115  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||||||        | |||||||| | ||||||||||| ||| |||||||| || |||    
T  40276149 accaaaaattggccttggggggccaaaactgctacagttgcaaaactt--aggggacgattttgtaattttttttcttagagggctaaaatcgcaacttc 40276052  T
Q  116 gtgaaagttagggagcgaaaattgctaccaagcctttaga 155  Q
      |||||||||||  |||||| || ||  |||||||||||    
T  40276051 acgaaagttaggggccgaaaactgatattaagcctttaga 40276012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 3333822 - 3333699
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttc 115  Q
    |||||||||||| ||||||||||| ||||||||||  |||||||||||        |  ||||||||| |||||||||||||| | ||||||| || |||    
T  3333822 accaaaaattggccttggggggccaaaactgctacatttgcaaaactt--agaggacggttttgtagt-ttttttcttaggggatcaaaatcgcaacttc 3333726  T
Q  116 gtgaaagttagggagcgaaaattgcta 142  Q
     |||||||||||| ||||||| |||||    
T  3333725 atgaaagttagggggcgaaaactgcta 3333699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 6130385 - 6130338
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  6130385 accaaaaattggccttggggggccaaaactgctacagttgcaaaactt 6130338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 19340891 - 19340844
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||||||    
T  19340891 accaaaaattgatcttggggggccaaaactgctacagttgcaaaactt 19340844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 21066523 - 21066570
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  21066523 accaaaaattggccttggggggccaaaactgctacagttgcaaaactt 21066570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 32391849 - 32391802
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  32391849 accaaaaattggccttggggggccaaaactgctacagttgcaaaactt 32391802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 20629800 - 20629743
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||||||||||||||||| || || |||||||||| || ||||||| |||||    
T  20629800 ttttttcttagggggttaaaatcgcaactttgtgaaagttaaggggcgaaaactgcta 20629743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 22300795 - 22300842
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||||||| ||||| ||||| |||||||||| ||||||||||||    
T  22300795 accaaaaattggccttggagggccaaaactgctacagttgcaaaactt 22300842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 25910966 - 25911032
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    ||||||||| ||||||||||| ||| |||||||  || |||||||||||||||| ||||||| |||||    
T  25910966 ttttgtagt-ttttttcttagagggctaaaatctcaacttcgtgaaagttagggggcgaaaactgcta 25911032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 16132966 - 16133019
Alignment:
Q  72 caattttgtagtg-ttttttcttagggggttaaaatcgtaatttcgtgaaagtt 124  Q
    ||||||||||||  ||||||||||||||| |||||||| || ||||||||||||    
T  16132966 caattttgtagttcttttttcttagggggctaaaatcgcaacttcgtgaaagtt 16133019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 18403174 - 18403222
Alignment:
Q  16 accaaaaattggtcttggggggcc-gaaactgctacggttgcaaaactt 63  Q
    |||||||||||| |||||||| || |||||| |||||||||||||||||    
T  18403174 accaaaaattggccttgggggaccagaaacttctacggttgcaaaactt 18403222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36798362 - 36798406
Alignment:
Q  19 aaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||||  |||||||||| |||||||||| ||||||||||||    
T  36798362 aaaaattggctttggggggccaaaactgctacagttgcaaaactt 36798406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 46150 - 46072
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgctaccaagccttta 153  Q
    ||||||||| | |||||||||||||||||||||| || |||||||||||||||| ||||||| |||||  |||||||||    
T  46150 ttttgtagtttcttttcttagggggttaaaatcgcaacttcgtgaaagttagggggcgaaaactgctataaagccttta 46072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 23891790 - 23891667
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttc 115  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||||||        |  ||||||||| |||||||||||||||  ||||||  || |||    
T  23891790 accaaaaattgatcttggggggccaaaactgctacagttgcaaaactt--aaggggcggttttgtagt-ttttttcttagggggccaaaatcacaacttc 23891694  T
Q  116 gtgaaagttagggagcgaaaattgcta 142  Q
    ||||||||||||||||||||| |||||    
T  23891693 gtgaaagttagggagcgaaaactgcta 23891667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 1096700 - 1096751
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaa 136  Q
    |||||||||| |||| |||||||| ||||||||||||||||| |||||||||    
T  1096700 ttttttcttaaggggctaaaatcgcaatttcgtgaaagttagagagcgaaaa 1096751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 6320765 - 6320811
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||||    
T  6320765 accaaaaattggtctttgggg-ccgaaactgctacagttgcaaaactt 6320811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 45739123 - 45739166
Alignment:
Q  20 aaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||    
T  45739123 aaaattggccttggggggccaaaactgctacagttgcaaaactt 45739166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 39642331 - 39642198
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttc 115  Q
    |||||||||||| ||||||||||| ||||||||||  ||||| |||||        |  ||||||||| |||||  |||| |||  ||||||| || |||    
T  39642331 accaaaaattggccttggggggccaaaactgctacaattgcagaactt--agggggcggttttgtagtttttttatttagagggccaaaatcgcaacttc 39642234  T
Q  116 gtgaaagttagggagcgaaaattgctaccaagcctt 151  Q
    ||||||||||||| ||||||| |||||  |||||||    
T  39642233 gtgaaagttagggggcgaaaactgctattaagcctt 39642198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 3377575 - 3377495
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgctaccaagcctttaga 155  Q
    ||||||||| |||||||||||||||  ||||||| || || |  |||||||||| || |||| |||||  |||||||||||    
T  3377575 ttttgtagttttttttcttagggggccaaaatcgcaactttggaaaagttagggggctaaaactgctattaagcctttaga 3377495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 6569657 - 6569613
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaa 60  Q
    ||||||||||||| |||||||||| ||||||||||  ||||||||    
T  6569657 accaaaaattggttttggggggccaaaactgctacaattgcaaaa 6569613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 41997771 - 41997723
Alignment:
Q  16 accaaaaattggtcttg-gggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||| ||||||||| ||||||| |||||||||| ||||||||||||    
T  41997771 accaaaatttggtcttgagggggccaaaactgctacagttgcaaaactt 41997723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 28350190 - 28350112
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgctaccaagccttta 153  Q
    ||||||||| |||||||||||||||  |||||||||| |||||||||||||||| || |||| |||||  |||||||||    
T  28350190 ttttgtagttttttttcttagggggccaaaatcgtaacttcgtgaaagttagggggctaaaactgctattaagccttta 28350112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 35250303 - 35250350
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  35250303 accaaaaattggtcttggggggccaaaactgctacagttgcaaaactt 35250350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 8074125 - 8074182
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||| |||| ||||||||||| |||||||||||||||| ||||||| |||||    
T  8074125 ttttttcttatggggctaaaatcgtaacttcgtgaaagttagggggcgaaaactgcta 8074182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 4049905 - 4050039
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttc 115  Q
    |||||||||||| ||||||||||| |||||||||| |||||||| |||        |  ||||||||| |||||||||||||||  ||||||  || |||    
T  4049905 accaaaaattggccttggggggccaaaactgctacagttgcaaacctt--agggggcggttttgtagt-ttttttcttagggggccaaaatcacaacttc 4050001  T
Q  116 gtgaaagttagggagcgaaaattgctaccaagccttta 153  Q
    |||||||||| || ||||||| |||||  |||||||||    
T  4050002 gtgaaagttaaggggcgaaaactgctattaagccttta 4050039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 5172707 - 5172826
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgtttttt-cttagggggttaaaatcgtaattt 114  Q
    |||||||||||| |||||||| || |||||||||| ||||||||||||        |  ||||||||| |||||| |||||||||| ||||||| || ||    
T  5172707 accaaaaattggccttgggggaccaaaactgctacagttgcaaaactt--agggggcggttttgtagttttttttccttagggggtcaaaatcgcaactt 5172804  T
Q  115 cgtgaaagttagggagcgaaaa 136  Q
    ||| |||||||||||| |||||    
T  5172805 cgtaaaagttagggagtgaaaa 5172826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 20185102 - 20185216
Alignment:
Q  18 caaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttcgt 117  Q
    |||||||| | ||||||||||| |||||||||| ||||||||||||        |  ||||||||| ||||||  |||||||| ||||||| || |||||    
T  20185102 caaaaattagccttggggggccaaaactgctacagttgcaaaactt--aggaggcggttttgtagtttttttt--tagggggtcaaaatcgcaacttcgt 20185197  T
Q  118 gaaagttagggagcgaaaa 136  Q
    ||||||||||| |||||||    
T  20185198 gaaagttagggggcgaaaa 20185216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 17876407 - 17876475
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgctaccaagccttta 153  Q
    |||||||||| ||||  |||||||||| |||||||||||||||| | ||||| |||||  |||||||||    
T  17876407 ttttttcttaaggggccaaaatcgtaacttcgtgaaagttagggggtgaaaactgctattaagccttta 17876475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 15348141 - 15348187
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||||||| |||||||| || |||||||||||||||||||||||    
T  15348141 accaaaaattggccttggggg-ccaaaactgctacggttgcaaaactt 15348187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 28785820 - 28785763
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    ||||||| |||||||  |||||||||| |||||||||||||||| ||| ||| |||||    
T  28785820 ttttttcctagggggccaaaatcgtaacttcgtgaaagttagggggcggaaactgcta 28785763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 41243894 - 41243951
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    ||||||||||||| |  |||||||||| || |||||||||||||| |||||| |||||    
T  41243894 ttttttcttagggtgccaaaatcgtaactttgtgaaagttagggaccgaaaactgcta 41243951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 46266493 - 46266569
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgctaccaagcctt 151  Q
    ||||||||| |||||||||||||||  ||||| | || ||| ||||| ||||||||| |||| |||||  |||||||    
T  46266493 ttttgtagttttttttcttaggggggcaaaattgcaacttcttgaaacttagggagctaaaactgctattaagcctt 46266569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 47909768 - 47909701
Alignment:
Q  74 attttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||| ||||||||||||||| |||||||| || || | ||||||||||| || |||| |||||    
T  47909768 attttgtagt-ttttttcttagggggctaaaatcgcaactttgggaaagttagggggctaaaactgcta 47909701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 38958092 - 38958150
Alignment:
Q  84 gttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| ||||||| |||||    
T  38958092 gttttttcttaggggctcaaaatcgtaatttcgtgaaagttagggggcgaaaactgcta 38958150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 14856677 - 14856553
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttc 115  Q
    ||||||||||||  |||||||||| ||||| |||  ||||||||||||        | |||||||||| ||||||||||||| || ||||||| || |||    
T  14856677 accaaaaattggcattggggggccaaaactactatagttgcaaaactt--atggggcgattttgtagttttttttcttagggagtcaaaatcgcaacttc 14856580  T
Q  116 gtgaaagttagggagcgaaaattgcta 142  Q
    ||||||||||||| ||||||| |||||    
T  14856579 gtgaaagttagggtgcgaaaactgcta 14856553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 4474256 - 4474300
Alignment:
Q  19 aaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||    
T  4474256 aaaaattggtcttggggggccaaaactgctacagttgcaaaactt 4474300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 43747409 - 43747303
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttc 115  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||        | |||||||||| |||||||||||||||  ||||||| || |||    
T  43747409 accaaaaattggtcttggggggccaaaactgctacaattgcaaaactt--attgggcgattttgtagt-ttttttcttagggggccaaaatcgcaacttc 43747313  T
Q  116 gtgaaagtta 125  Q
    || |||||||    
T  43747312 gtaaaagtta 43747303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 53184755 - 53184824
Alignment:
Q  72 caattttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||||| |||||||||||| ||  ||||||| || ||||| |||||||||||||||||| |||||    
T  53184755 caattttgtagt-ttttttcttaggtggcaaaaatcgcaacttcgtaaaagttagggagcgaaaactgcta 53184824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 25902532 - 25902488
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaa 60  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||    
T  25902532 accaaaaattggtcttggggggccaaaactgttacagttgcaaaa 25902488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 38178703 - 38178759
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgct 141  Q
    |||||| ||||||||||||||||| || || ||| ||||||||| ||||||||||||    
T  38178703 ttttttattagggggttaaaatcgcaactttgtgtaagttagggggcgaaaattgct 38178759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 44585918 - 44585874
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaa 60  Q
    |||||||||||||||||||||||  |||||||||| |||||||||    
T  44585918 accaaaaattggtcttggggggcgaaaactgctacagttgcaaaa 44585874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 14349360 - 14349415
Alignment:
Q  87 ttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||| ||||||||||||||||| || ||||| |||||||||| ||||||| |||||    
T  14349360 tttttttagggggttaaaatcgcaacttcgtaaaagttagggggcgaaaactgcta 14349415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 44436519 - 44436472
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||| ||||||| ||||||||||| |||||||||| ||||||||||||    
T  44436519 accacaaattggccttggggggccaaaactgctacagttgcaaaactt 44436472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 54719121 - 54719074
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||||||  ||||||||||| |||||||||| ||||||||||||    
T  54719121 accaaaaattgaccttggggggccaaaactgctacagttgcaaaactt 54719074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 17773244 - 17773166
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgctaccaagccttta 153  Q
    ||||||||| ||||| ||||||| |  ||||||| || || ||||||||||||| ||||||| |||||  |||||||||    
T  17773244 ttttgtagtttttttccttagggtgccaaaatcgcaacttagtgaaagttagggggcgaaaactgctattaagccttta 17773166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 19074545 - 19074467
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgctaccaagccttta 153  Q
    ||||||||| ||||| ||||||| |  ||||||| || || ||||||||||||| ||||||| |||||  |||||||||    
T  19074545 ttttgtagtttttttccttagggtgccaaaatcgcaacttagtgaaagttagggggcgaaaactgctattaagccttta 19074467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 25154365 - 25154411
Alignment:
Q  17 ccaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||| |||||| ||||||||||| |||||||||| ||||||||||||    
T  25154365 ccaataattggccttggggggccaaaactgctacagttgcaaaactt 25154411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 54464414 - 54464464
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaa 135  Q
    |||||||||||||||  || |||| || |||||||||||||||||||||||    
T  54464414 ttttttcttagggggccaatatcgcaaattcgtgaaagttagggagcgaaa 54464464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 3193031 - 3193088
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||||||||| ||||||| || ||| |||||||||||| | ||||| |||||    
T  3193031 ttttttcttagggggtcaaaatcgcaacttcttgaaagttagggggtgaaaactgcta 3193088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 14340807 - 14340746
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaa 136  Q
    ||||||||| ||| ||| ||||||   |||||||||| |||||||||||||||| |||||||    
T  14340807 ttttgtagtttttattcgtaggggaccaaaatcgtaacttcgtgaaagttagggggcgaaaa 14340746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 33329675 - 33329618
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||||||||| ||||||| || ||||| |||||||| | ||||||| |||||    
T  33329675 ttttttcttagggggtcaaaatcgcaacttcgtaaaagttagagggcgaaaactgcta 33329618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 53020590 - 53020541
Alignment:
Q  87 ttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaa 136  Q
    |||| ||||||| | ||||||| ||||||||||||||||| |||||||||    
T  53020590 tttttttaggggatcaaaatcgcaatttcgtgaaagttagagagcgaaaa 53020541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 19404463 - 19404419
Alignment:
Q  84 gttttttcttagggggttaaaatcgtaatttcgtgaaagttaggg 128  Q
    |||||||||||| ||| |||||||| || ||||||||||||||||    
T  19404463 gttttttcttagagggctaaaatcgcaacttcgtgaaagttaggg 19404419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 28204543 - 28204487
Alignment:
Q  86 tttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    ||||| ||||||||| ||||||| || ||||||||||||| || ||||||| |||||    
T  28204543 ttttttttagggggtcaaaatcgcaacttcgtgaaagttaaggggcgaaaactgcta 28204487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 46226938 - 46226994
Alignment:
Q  86 tttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    ||||| ||||||||| ||||||| || ||||||||||||||||  |||||| |||||    
T  46226938 ttttttttagggggtcaaaatcgcaacttcgtgaaagttaggggacgaaaactgcta 46226994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 37813236 - 37813159
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgctaccaagccttt 152  Q
    ||||||||| |||||||||||||||  |||||||||| || ||||||||||||| ||||||| |||||  ||||||||    
T  37813236 ttttgtagttttttttcttagggggccaaaatcgtaaatttgtgaaagttagggggcgaaaactgctattaagccttt 37813159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 41487326 - 41487197
Alignment:
Q  21 aaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaa 120  Q
    ||||||| |||||| |||| |||||||||| ||||||||||||        |  ||||||||| || ||||||||||||| ||||||| || ||||||||    
T  41487326 aaattggccttgggcggccaaaactgctacagttgcaaaactt--agggggcggttttgtagttttgtttcttagggggtcaaaatcgcaacttcgtgaa 41487229  T
Q  121 agttagggagcgaaaattgctaccaagccttt 152  Q
    | || ||| ||||||| |||||  ||||||||    
T  41487228 aattcgggggcgaaaactgctattaagccttt 41487197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 26824072 - 26824125
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttaggg 128  Q
    ||||||||| ||||||||||| |||| ||||||| || ||||||||||||||||    
T  26824072 ttttgtagttttttttcttagagggtcaaaatcgcaacttcgtgaaagttaggg 26824125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 16982700 - 16982625
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgctaccaagcct 150  Q
    ||||||||| ||||||||||||||   ||||| | || |||||||||||||||| | ||||| ||||| |||||||    
T  16982700 ttttgtagttttttttcttaggggaccaaaattgcaacttcgtgaaagttagggggtgaaaactgctatcaagcct 16982625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 30539119 - 30539072
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||||||| ||||||||||| |||||||||| |||| |||||||    
T  30539119 accaaaaattggccttggggggccaaaactgctacagttgtaaaactt 30539072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 35213159 - 35213112
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||||||||| |||||||||| |||||| ||| ||||||||||||    
T  35213159 accaaaaattggtattggggggccaaaactgttacagttgcaaaactt 35213112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 39889901 - 39889854
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||||||| ||||||| |||| |||||||||| ||||||||||||    
T  39889901 accaaaaattgatcttgggaggccaaaactgctacagttgcaaaactt 39889854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 44101420 - 44101373
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||||||||||||||| |||| |||||||||  ||||||||||||    
T  44101420 accaaaaattggtcttgggaggccaaaactgctaaagttgcaaaactt 44101373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 22192366 - 22192309
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||||||||  ||||||| || ||||||||||||| || ||||||| |||||    
T  22192366 ttttttcttagggggccaaaatcgcaacttcgtgaaagttaaggggcgaaaactgcta 22192309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 33298585 - 33298646
Alignment:
Q  87 ttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgctaccaagc 148  Q
    |||||||||||||  ||||||| || |||||||||||||||  ||||||| ||||| |||||    
T  33298585 ttttcttagggggccaaaatcgcaacttcgtgaaagttaggaggcgaaaactgctatcaagc 33298646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 33401238 - 33401285
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  33401238 accaaaaattggtcttggggggccaaaactgctacagttgcaaaactt 33401285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 10727320 - 10727274
Alignment:
Q  17 ccaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  10727320 ccaaaaattggccttggggggccaaaactgctacagttgcaaaactt 10727274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 12766455 - 12766530
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgctaccaagcctt 151  Q
    ||||||||| |||||| ||||||||  ||||||| || |||||||||||||||| | ||||| |||||  |||||||    
T  12766455 ttttgtagtttttttt-ttagggggccaaaatcgcaacttcgtgaaagttagggggtgaaaactgctattaagcctt 12766530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 2883 - 2765
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttc 115  Q
    |||||||||||||||||||| ||| |||||||||| |||| |||| ||        || ||||||||| ||||||||||| |   ||||||||||| |||    
T  2883 accaaaaattggtcttggggagccaaaactgctacagttgtaaaattt--agggggcagttttgtagttttttttcttagagaactaaaatcgtaaattc 2786  T
Q  116 gtgaaagttagggagcgaaaa 136  Q
    || |||||||||| |||||||    
T  2785 gtaaaagttagggtgcgaaaa 2765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 15023022 - 15023145
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaacttcnnnnnnncaattttgtagtgttttttcttagggggttaaaatcgtaatttc 115  Q
    |||||||||||||||||||||||| ||| |||||| ||| ||||||||        |  ||||||||| |||||||||||||||| ||||||  || |||    
T  15023022 accaaaaattggtcttggggggccaaaattgctacagttacaaaactt--aggggacggttttgtagt-ttttttcttagggggtcaaaatcacaacttc 15023118  T
Q  116 gtgaaagttagggagcgaaaattgcta 142  Q
     |||||||||||| || |||| |||||    
T  15023119 ttgaaagttagggggccaaaactgcta 15023145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 16043279 - 16043331
Alignment:
Q  89 ttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgct 141  Q
    |||||||||||  |||||||||| |||||||||||||||| ||||||| ||||    
T  16043279 ttcttagggggccaaaatcgtaacttcgtgaaagttagggggcgaaaactgct 16043331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 4576673 - 4576627
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    ||||||||||||||||||||| || |||||||||| ||||||||||||    
T  4576673 accaaaaattggtcttggggg-ccaaaactgctacagttgcaaaactt 4576627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 5362249 - 5362186
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaatt 138  Q
    ||||||||| |||||||||| ||||  ||||||| || || ||||||||||||| |||||||||    
T  5362249 ttttgtagttttttttcttatggggccaaaatcgcaactttgtgaaagttagggggcgaaaatt 5362186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 6510187 - 6510230
Alignment:
Q  20 aaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||    
T  6510187 aaaattagtcttggggggccaaaactgctacagttgcaaaactt 6510230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 19206271 - 19206224
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||||||| ||||||||||| |||||||||| |||| |||||||    
T  19206271 accaaaaattggccttggggggccaaaactgctacagttgtaaaactt 19206224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 34761100 - 34761167
Alignment:
Q  75 ttttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||  ||||||||| || |||||||||| || ||||||||||||||||  |||||| |||||    
T  34761100 ttttgtagttctttttcttaaggagttaaaatcgcaacttcgtgaaagttaggggacgaaaactgcta 34761167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 39918625 - 39918672
Alignment:
Q  16 accaaaaattggtcttggggggccgaaactgctacggttgcaaaactt 63  Q
    |||||||||||| ||||||||||| ||| |||||| ||||||||||||    
T  39918625 accaaaaattggccttggggggccaaaattgctacagttgcaaaactt 39918672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 37803382 - 37803436
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattg 139  Q
    |||||||||||| ||| ||||||| || ||||| |||||||||| ||||||||||    
T  37803382 ttttttcttaggaggtcaaaatcgcaacttcgtaaaagttagggggcgaaaattg 37803436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 31827781 - 31827838
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||||| ||| | ||||| || ||||| |||||||||| |||||||||||||    
T  31827781 ttttttcttaggaggtcataatcgcaacttcgtaaaagttagggggcgaaaattgcta 31827838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 14489451 - 14489517
Alignment:
Q  74 attttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||| ||||||||||||||   ||||||| || |||||||||||||||| ||||||| |||||    
T  14489451 attttgtagt-ttttttcttaggggcc-aaaatcgcaacttcgtgaaagttagggggcgaaaactgcta 14489517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 203425 - 203480
Alignment:
Q  85 ttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||| | |||||||||||    
T  203425 ttttttcttaggaggt-aaaatcgcaatttcgtgaaagttaggg-gagaaaattgcta 203480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 1546 - 1478
Alignment:
Q  74 attttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||| |||||||||||||||  ||||||  || || ||||||||||||| || |||| |||||    
T  1546 attttgtagttttttttcttagggggccaaaatctcaactttgtgaaagttagggggctaaaactgcta 1478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 3714 - 3646
Alignment:
Q  74 attttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||| |||||||||||||||  ||||||| || || | ||||||||||| || |||| |||||    
T  3714 attttgtagttttttttcttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgcta 3646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 3714 - 3646
Alignment:
Q  74 attttgtagtgttttttcttagggggttaaaatcgtaatttcgtgaaagttagggagcgaaaattgcta 142  Q
    |||||||||| |||||||||||||||  ||||||| || || | ||||||||||| || |||| |||||    
T  3714 attttgtagttttttttcttagggggccaaaatcgcaactttgggaaagttagggggctaaaactgcta 3646  T

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