View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_49 (Length: 252)
Name: NF0568_low_49
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_49 |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 55956559 - 55956335
Alignment:
| Q |
28 |
caccaggaccatggaagcttcctttaataggaaacttgcatcaactagcattaggaggatcacttccacatcataaacttcgagatctatccaacaaata |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55956559 |
caccaggaccatggaagcttcctttaataggaaacttgcatcaactagcattaggaggatcacttccacatcatactcttcgagatctatccaacaaata |
55956460 |
T |
|
| Q |
128 |
tggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttctttt |
227 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956459 |
tggacctcttatgtatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttctttt |
55956360 |
T |
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| Q |
228 |
gttcagcggccagaactcctagctc |
252 |
Q |
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|||||| |||||||||||||||||| |
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| T |
55956359 |
gttcagaggccagaactcctagctc |
55956335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 55959948 - 55959791
Alignment:
| Q |
86 |
atcacttccacatcataaacttcgagatctatccaacaaatatggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcct |
185 |
Q |
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|||||||||||| |||| ||||||| |||| || || |||||||||||||||||||||||||||| |||||||||||| || | ||||| ||||| ||| |
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| T |
55959948 |
atcacttccacaccatacacttcgaaatctgtcaaa--aatatggacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccct |
55959851 |
T |
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| Q |
186 |
gatttggccaaagagataatgaagacacatgatctttcttttgttcagcggccagaactc |
245 |
Q |
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| T |
55959850 |
gatttagccaaagagatattgaagacacgtgatcttgcttttgttcaaaggccaaaactc |
55959791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 12426889 - 12426665
Alignment:
| Q |
28 |
caccaggaccatggaagcttcctttaataggaaacttgcatcaactagcattaggaggatcacttccacatcataaacttcgagatctatccaacaaata |
127 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||| |||| ||||||||||| ||||||| |
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| T |
12426889 |
caccaggaccatggaagcttcctctaataggaaacttgcatcaactagcattagcaggaaaacttccacaccatacacttggagatctatcccacaaata |
12426790 |
T |
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| Q |
128 |
tggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttctttt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||| |
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| T |
12426789 |
tggacctcttatgcatcttcagcttggtgaaatttctacagtggttgtttcatcccctaatttgactaaagagataatgaagacacatgatctttctttt |
12426690 |
T |
|
| Q |
228 |
gttcagcggccagaactcctagctc |
252 |
Q |
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|||||| ||||| || ||||||||| |
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| T |
12426689 |
gttcagaggccacaattcctagctc |
12426665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 12265931 - 12266142
Alignment:
| Q |
28 |
caccaggaccatggaagcttcctttaataggaaacttgcatcaactagcattaggaggatcacttccacatcataaacttcgagatctatccaacaaata |
127 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| | ||||| | |||| ||||| ||| |||| | || |||||||||| ||||||| |
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| T |
12265931 |
caccaggaccatggaagcttcctctaataggaaacttgcatcaaattgcatttgcaggaaaacttctacaccatacaattagagatctatcacacaaata |
12266030 |
T |
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| Q |
128 |
tggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttctttt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||| ||||||| |||||||||||||||||| |
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| T |
12266031 |
tggacctcttatgcatcttcagcttggtgaaatttctgccgtggttgtttcatcccctaatttgaccaaagaaataatgaggacacatgatctttctttc |
12266130 |
T |
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| Q |
228 |
gttcagcggcca |
239 |
Q |
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||| || ||||| |
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| T |
12266131 |
gttgagaggcca |
12266142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 22858553 - 22858457
Alignment:
| Q |
124 |
aatatggacctcttatgcatcttcagcttggtgaaatttct-gcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatct |
220 |
Q |
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||||||||||||| ||||| | ||||| |||||| ||||| ||| | ||||||||||||| ||| |||| |||||||||||||| ||||||||||| |
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| T |
22858553 |
aatatggacctctcatgcacatgcagctaggtgaactttcttgca-tagttgtttcatctcaagatatggcaaaagagataatgaaaacacatgatct |
22858457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 22901735 - 22901831
Alignment:
| Q |
124 |
aatatggacctcttatgcatcttcagcttggtgaaatttct-gcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatct |
220 |
Q |
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|||||||| |||| |||||| | ||||||||||| ||||| ||| | ||||||||||||| || |||| |||||||||||||| ||||||||||| |
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| T |
22901735 |
aatatggatctctaatgcatatgcagcttggtgagctttcttgca-tagttgtttcatctcaagaaatggcaaaagagataatgaaaacacatgatct |
22901831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 22907171 - 22907131
Alignment:
| Q |
124 |
aatatggacctcttatgcatcttcagcttggtgaaatttct |
164 |
Q |
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|||||||||||||||||||| | | |||||||||||||||| |
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| T |
22907171 |
aatatggacctcttatgcatatgcggcttggtgaaatttct |
22907131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 7152319 - 7152414
Alignment:
| Q |
123 |
aaatatggacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgat |
218 |
Q |
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|||||||||||| | ||||| | || ||||||||||||||| | ||| |||| ||||||||| | ||||| || || |||||||| ||||||||| |
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| T |
7152319 |
aaatatggacctttaatgcacatacaacttggtgaaatttctactgtgattgtatcatctcctaaattggcaaaggaaataatgaaaacacatgat |
7152414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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