View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0568_low_5 (Length: 531)
Name: NF0568_low_5
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 30 - 522
Target Start/End: Original strand, 42449965 - 42450466
Alignment:
| Q |
30 |
tgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccaactctccacctcaatacagcattagcaacg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
42449965 |
tgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccaactctccgcctcaatacagtgttagcaacg |
42450064 |
T |
|
| Q |
130 |
gcatttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacatttctttctcattttcgccaagtcgggacactggta |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| |
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|
| T |
42450065 |
gcatttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacctttctttctcattttcactaagtcgggacactggta |
42450164 |
T |
|
| Q |
230 |
tacccgtcaataggctaacaaccaaagctattaggtctggtt---------ttgtcaacatcaagctcttatcggtgctatcttcaagtcgttgaattgc |
320 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42450165 |
tacccgtcaataggctaacaaccaaacctattaggtctggttcaacagtttttgtcaacatcaagcttttatcggtgctatcttcaagtcgttgaattgc |
42450264 |
T |
|
| Q |
321 |
atcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctcttcacgt |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42450265 |
atcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctcttcacgt |
42450364 |
T |
|
| Q |
421 |
ttctgcttcagcctttgaatctcatcaatcctcactttctcttttctatacttcatgaccagagttagaagcatttcttttaagtcgtcaagttctctct |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
42450365 |
ttctgcttcagcctttgaatctcatcaatcctcactttctcttttctatacttcatgaccagagttagaagcatttcttttaagtcgtcaagttctttct |
42450464 |
T |
|
| Q |
521 |
gc |
522 |
Q |
| |
|
|| |
|
|
| T |
42450465 |
gc |
42450466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 30 - 516
Target Start/End: Original strand, 742709 - 743213
Alignment:
| Q |
30 |
tgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccaactctccacctcaatacagcattagcaacg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||| ||||||||| |
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|
| T |
742709 |
tgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctgaaccagctctccaccttaatacagcgttagcaacg |
742808 |
T |
|
| Q |
130 |
gcatttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacatttctttctcattttcgccaagtcgggacactggta |
229 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| || || ||||||||||||| |||||||||| ||||||||||||||||||||| | ||| |||||||| |
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|
| T |
742809 |
tcatttactgcttgatcttgtcccacaactctattatgcaacctgtcaccaattccaagaaacctttctttctcattttcgccaatttgggtcactggta |
742908 |
T |
|
| Q |
230 |
tacccgtcaataggctaacaaccaaagctattaggtctggt-----------------tttgtcaacatcaagctcttatcggtgctatcttcaagtcgt |
312 |
Q |
| |
|
| || ||||||||||||||||||| ||| ||||||| | || | ||||||||| ||||||| ||| ||||||||| |||| | |
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|
| T |
742909 |
tgccggtcaataggctaacaaccatagcaattaggttttgtactccagcacagcagtttctgtcaacattaagctctcatcagtgctatctccaagcagc |
743008 |
T |
|
| Q |
313 |
tgaattgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagct |
412 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
743009 |
tgaattgcatcttccacgtcatcaatcgcaccatatcgtagacttgcagctctttctatatcatgccgcctctcagcctcctgtagagacaagataagct |
743108 |
T |
|
| Q |
413 |
cttcacgtttctgcttcagcctttgaatctcatcaatcctcactttctcttttctatacttca-tgaccagagttagaagcatttcttttaagtcgtcaa |
511 |
Q |
| |
|
|||| | |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||| |
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|
| T |
743109 |
cttcgcttttcagcttcagcctttgaatctcatcaatccttgctttctcttttctatacttcattgaccagagttagaagcttctcttttaagtcgtcaa |
743208 |
T |
|
| Q |
512 |
gttct |
516 |
Q |
| |
|
||||| |
|
|
| T |
743209 |
gttct |
743213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 315 - 519
Target Start/End: Complemental strand, 45467616 - 45467412
Alignment:
| Q |
315 |
aattgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctct |
414 |
Q |
| |
|
||||||| |||||| || ||||| ||||||||||| ||| ||||||||||||| ||||| ||||||||| ||||||||||| | |||| |||||| |
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|
| T |
45467616 |
aattgcagtttccacctcttcaattgcaccatatcgcaggtccgcagctcttgctagatcataccgcctctctgcctcctgtagtgcaaagaggagctct |
45467517 |
T |
|
| Q |
415 |
tcacgtttctgcttcagcctttgaatctcatcaatcctcactttctcttttctatacttcatgaccagagttagaagcatttcttttaagtcgtcaagtt |
514 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||| | ||||| | ||| | ||||| ||||||| |
|
|
| T |
45467516 |
tcacgtttctgcttcagccttcgaatctcatcaatcctctctttctctttactatacttcatcttcagaggttgaagcttgtctctcaagtcatcaagtt |
45467417 |
T |
|
| Q |
515 |
ctctc |
519 |
Q |
| |
|
||||| |
|
|
| T |
45467416 |
ctctc |
45467412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 31 - 252
Target Start/End: Complemental strand, 45467921 - 45467700
Alignment:
| Q |
31 |
gttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccaactctccacctcaatacagcattagcaacgg |
130 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||| |||| ||||| ||||||||||||||| |||| | ||||||||||| | |||||| | |
|
|
| T |
45467921 |
gttttaccaacaccagtcggaccaaggaataagaaggaaccagttggttgttggggtcttcctaaaccagctcttgatctcaatacagcctcagcaacag |
45467822 |
T |
|
| Q |
131 |
catttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacatttctttctcattttcgccaagtcgggacactggtat |
230 |
Q |
| |
|
|||| || || || ||||||||||| ||||| |||| | |||||||||||||||| ||| || |||||||||||| ||| || | | ||||||||| |
|
|
| T |
45467821 |
cattaaccgcttggtcttgtcccacgactctagtgtgcagtctgtcaccaagtccaaccaaccttgctttctcattttggccgagcctagtcactggtat |
45467722 |
T |
|
| Q |
231 |
acccgtcaataggctaacaacc |
252 |
Q |
| |
|
||| ||| || ||||||||||| |
|
|
| T |
45467721 |
accagtccatcggctaacaacc |
45467700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 316 - 476
Target Start/End: Complemental strand, 10045762 - 10045602
Alignment:
| Q |
316 |
attgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctctt |
415 |
Q |
| |
|
||||||| |||||| || ||||| ||||||||||||||| ||||||||| |||| ||||| ||||||||||||||| ||||| | |||| ||||||| |
|
|
| T |
10045762 |
attgcattttccacctcttcaattgcaccatatcgtaggtctgcagctctggctagatcataccgcctctcagcctcttgtagtgcaaagaggagctctt |
10045663 |
T |
|
| Q |
416 |
cacgtttctgcttcagcctttgaatctcatcaatcctcactttctcttttctatacttcat |
476 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
10045662 |
cacgtttctgtttcagacttcgaatctcatcaatcctctctttctctttgatatacttcat |
10045602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 10046069 - 10045847
Alignment:
| Q |
30 |
tgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccaactctccacctcaatacagcattagcaacg |
129 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| |||| ||||| |||| | |||||| ||| || |
|
|
| T |
10046069 |
tgttttaccgacaccagttggaccaaggaataggaaggaaccagttggttgttgtggtcttcctagaccagctctcgaccttactacagccccagcgaca |
10045970 |
T |
|
| Q |
130 |
gcatttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacatttctttctcattttcgccaagtcgggacactggta |
229 |
Q |
| |
|
|| || ||||| || ||||||||||| ||||| | || || ||||| |||||||||| ||| ||||||| ||||||| ||| | || | |||||||| |
|
|
| T |
10045969 |
gctttaactgcttggtcttgtcccacaactctagtatgcaatctgtctccaagtccaaccaacctttctttatcattttggcctaaacgagtcactggta |
10045870 |
T |
|
| Q |
230 |
tacccgtcaataggctaacaacc |
252 |
Q |
| |
|
|||| ||| || ||||||||||| |
|
|
| T |
10045869 |
taccggtccatcggctaacaacc |
10045847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 38707861 - 38707683
Alignment:
| Q |
30 |
tgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccaactctccacctcaatacagcattagcaacg |
129 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| |||| |||| | ||||||||||| ||||||||||||| | |||| |||||| ||||| |
|
|
| T |
38707861 |
tgttttaccaacactatttggaccaaggaataggaagggaccagttggtttttgaggtcttcttaaaccaactctcgatctcactacagccccagcaaaa |
38707762 |
T |
|
| Q |
130 |
gcatttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacatttctttctcatttt |
208 |
Q |
| |
|
| || ||||| || ||||||||||| ||||| |||| || ||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
38707761 |
actttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcatttt |
38707683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 464
Target Start/End: Complemental strand, 38707531 - 38707441
Alignment:
| Q |
372 |
atcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgcttcagcctttgaatctcatcaatcctcactttctcttt |
464 |
Q |
| |
|
||||| || |||||||||||||||||| | |||| |||||||||||| | | ||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
38707531 |
atcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgt--ttcagccttcaaatctcatcaatcctctctttctcttt |
38707441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 43064740 - 43064828
Alignment:
| Q |
31 |
gttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccaactctccacctcaatacagc |
119 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| || |||| ||||||| ||||||||||||| |||| | ||||||||||| |
|
|
| T |
43064740 |
gttttaccaacaccaattggaccaaggaataggaagggacatgttggttgttgagctcttcctaaaccagctcttgatctcaatacagc |
43064828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 43065107 - 43065032
Alignment:
| Q |
31 |
gttttaccaacaccagttggaccaaggaataggaagga--accaattggatgttgaggtcttcctaaaccaactct |
104 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||| ||| |||||||||||| ||||||||||||| |||| |
|
|
| T |
43065107 |
gttttaccaacaccagttggacaaaggaacatgaaggaacaccttttggatgttgagctcttcctaaaccagctct |
43065032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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