View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_51 (Length: 251)
Name: NF0568_low_51
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 15076326 - 15076234
Alignment:
| Q |
1 |
taaggatcacaatgtagctcaacacaacatttgactaagatttttcatcaaatcaaggtaactgaccacaatattcaggaagaaaacttgcaag |
94 |
Q |
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| T |
15076326 |
taaggatcacaatgtagctcaacacaa-atttgactaagatttttcatcaaatcaaggtaactgaccacaatattcaggaagaaaacttgcaag |
15076234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 15071016 - 15070940
Alignment:
| Q |
167 |
ggttacaaaatgacaagacacatattaagttgagagattctagcttaatttgtccatgcatgcataacacctatgct |
243 |
Q |
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| T |
15071016 |
ggttacaaaatgacaagacacatattaagttgagagattctagcttaatttgtccatgcatgcataacacctatgct |
15070940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 15064266 - 15064218
Alignment:
| Q |
195 |
gttgagagattctagcttaatttgtccatgcatgcataacacctatgct |
243 |
Q |
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| T |
15064266 |
gttgagagattctagcttaatttgtccatgcatgcattacacctatgct |
15064218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 15064500 - 15064408
Alignment:
| Q |
2 |
aaggatcacaatgtagctcaacacaacatttgactaagatttttcatcaaatcaaggtaactgaccacaatattcaggaagaaaacttgcaag |
94 |
Q |
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| T |
15064500 |
aaggatcacaatgttggtgaacacaacatttgaccaagatattttatcaaatcaaggtaactgaacagaatattcatgagtaaaactagcaag |
15064408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 30854184 - 30854278
Alignment:
| Q |
2 |
aaggatcacaatgtagctcaacacaacatttgactaaga--tttttcatcaaatcaaggtaactgaccacaatattcaggaagaaaacttgcaag |
94 |
Q |
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| T |
30854184 |
aaggatcacaatgtagctgaactcaacatttgactgagattttttttatcaaatcaaggtaattgaacaaaatattaaggaggaaaacttgcaag |
30854278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 30878618 - 30878662
Alignment:
| Q |
199 |
agagattctagcttaatttgtccatgcatgcataacacctatgct |
243 |
Q |
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| T |
30878618 |
agagattctagcttaatttgtccatgcatgcatgacacctatgct |
30878662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 30854421 - 30854463
Alignment:
| Q |
201 |
agattctagcttaatttgtccatgcatgcataacacctatgct |
243 |
Q |
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| T |
30854421 |
agattccagcttaatttgtccatgcatgcatgacacctatgct |
30854463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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