View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_53 (Length: 251)
Name: NF0568_low_53
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 13646546 - 13646786
Alignment:
| Q |
1 |
tctgattttcatagtgaagagaagcatcctggatttggagaaaggataggtgatgtaattacgtcactcagtttgtatggtaagtcttttttgagagata |
100 |
Q |
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| T |
13646546 |
tctgattttcatagtgaagagaagcatcctggatttggagaaaggataggtgatgtaattacgtcactgagtttgtatggtaagcctttgttgaaagata |
13646645 |
T |
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| Q |
101 |
ttattgtgtctgagaaaataagttgcattattttggatggaatatttggtgatcttgctactgatttggctgctgagtttggaatacaattgattcattt |
200 |
Q |
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| T |
13646646 |
taattgtctccgagaaaataagttgcattattttggatggaatatttggtgatcttgctactgatttggctgctgagtttggaatacaattgattcattt |
13646745 |
T |
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| Q |
201 |
tcgtactattagttcttgttgcttttgggcttatttctgtg |
241 |
Q |
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| T |
13646746 |
tcgtactattagttcttgttgcttttgggcttatttctgtg |
13646786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13656872 - 13657107
Alignment:
| Q |
1 |
tctgattttcatagtgaagagaagcatcctggatttggagaaaggataggtgatgtaattacgtcactcagtttgtatggtaagtcttttttgagagata |
100 |
Q |
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| T |
13656872 |
tctgattttcacagtgaggagaaacatcctggatttggagaaaaggtaggtgatgtaattttgtcactgagtttgtatggtaagcctttgttgaaagata |
13656971 |
T |
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| Q |
101 |
ttattgtgtctgagaaaataagttgcattattttggatggaatatttggtgatcttgctactgatttggctgctgagtttggaatacaattgattcattt |
200 |
Q |
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| T |
13656972 |
taattgtctccgagaaaataagttgcattattttggatggaatatttggtgatcttgctactgatttggctgctgagtttgggatacaattgattcattt |
13657071 |
T |
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| Q |
201 |
tcgtactattagttcttgttgcttttgggcttattt |
236 |
Q |
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| T |
13657072 |
tcgtactattagtgcttgttgcttttgggcttattt |
13657107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 13651627 - 13651833
Alignment:
| Q |
1 |
tctgattttcatagtgaagagaagcatcctggatttggagaaaggataggtgatgtaattacgtcactcagtttgtatggtaagtcttttttgagagata |
100 |
Q |
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||||||||||| | | | ||||||||||||||||||||||||| || | ||||||||| | || | | | ||||||||||| ||| ||||||||| | |
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| T |
13651627 |
tctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccataaatatgtatggtaagccttctttgagagaca |
13651726 |
T |
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| Q |
101 |
ttattgtgtctgagaaaataagttgcattattttggatggaatatttggtgatcttgctactgatttggctgctgagtttggaatacaattgattcattt |
200 |
Q |
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| T |
13651727 |
ttattgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgctactgatttggctgctgaatttgggatacagttgatacattt |
13651826 |
T |
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| Q |
201 |
tcgtact |
207 |
Q |
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| T |
13651827 |
tcgtact |
13651833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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