View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_54 (Length: 247)
Name: NF0568_low_54
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 23668875 - 23669054
Alignment:
| Q |
30 |
tttttctcaatagatatgaaaatttgaaaccattctttttaagttcatgcaaa-tctgaggattaatttattgaggcatataaacaattatttgaatata |
128 |
Q |
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| T |
23668875 |
tttttctcaatagatatgaaaatttgaaaccattctttttaagttcatgcaaaatctgaggattaatttattgagacatataaacaattatttgaatata |
23668974 |
T |
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| Q |
129 |
ggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttgctat |
208 |
Q |
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| T |
23668975 |
ggaacagagagtggtgaaggaacaaattggtttctacatgattgagaaatatgcacataaaagtgttgaaagcttgctat |
23669054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 5827107 - 5827018
Alignment:
| Q |
85 |
tgaggattaatttattgaggcatataaacaattatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgag |
174 |
Q |
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| T |
5827107 |
tgaggattaatttattgagacatatagacaattatttgaatataacaacacagaatggtgaaagaacaaattggtttctacatgattgag |
5827018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 47817838 - 47817657
Alignment:
| Q |
31 |
ttttctcaatagatatgaaaatttgaaaccattctttttaagttcatgcaaa-tctgaggattaatttattgaggcatataaacaattatttgaatatag |
129 |
Q |
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| T |
47817838 |
ttttctcaatagatatgaaaatttgaaaccattctttttaagttcatgcaaaatttgaggattaatttattgagacatataaacaattatttgaatatag |
47817739 |
T |
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| Q |
130 |
gaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttgctattgt |
211 |
Q |
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| T |
47817738 |
gaacatagagtggtgaatgaacaaataggtttctacatgattgagaaatctgcacataatagtgttgaaagcttgctattgt |
47817657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 26049280 - 26049402
Alignment:
| Q |
85 |
tgaggattaatttattgaggcatataaacaattatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcac |
184 |
Q |
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| T |
26049280 |
tgaggattaatttattgagacatatggacagttatttgaatataacaacacagaatggtgaaagaacaaattgttttctacatgattgagaaatttgcac |
26049379 |
T |
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| Q |
185 |
ataaaagtgttgaaagcttgcta |
207 |
Q |
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| T |
26049380 |
cgaaaagtgtttatagcttgcta |
26049402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 328641 - 328549
Alignment:
| Q |
118 |
atttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttgctattgt |
211 |
Q |
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| T |
328641 |
atttgaatataagaacacagaatggtgaaggaacaaattggattctatatgattgaggaat-tgcaccgaaaagcgtggatagcttgatattgt |
328549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 9369738 - 9369920
Alignment:
| Q |
30 |
tttttctcaatagatatgaaaatttgaaaccattctttttaagttcatgcaaa-tctgaggattaatttattgaggcatataaacaattatttgaatata |
128 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
9369738 |
ttttactcaatagatatgaaaatttgaaaccattctttttaaattcatgcaaaatgtgaggattaatttattgagacatataaacaattatttaaatata |
9369837 |
T |
|
| Q |
129 |
ggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttgctattgt |
211 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9369838 |
ggaatagagagtggtgaaggaacaaattgatttttacatgattgagaaatatgcacataaaagtgttgaaagcttgctattgt |
9369920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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