View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0568_low_55 (Length: 236)

Name: NF0568_low_55
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0568_low_55
NF0568_low_55
[»] chr4 (25 HSPs)
chr4 (27-196)||(16844724-16844893)
chr4 (130-196)||(37777459-37777525)
chr4 (142-196)||(24969254-24969308)
chr4 (133-196)||(40089328-40089390)
chr4 (128-189)||(2790981-2791042)
chr4 (127-178)||(35780574-35780625)
chr4 (130-196)||(19498313-19498379)
chr4 (142-196)||(32128404-32128458)
chr4 (130-196)||(34027388-34027454)
chr4 (146-196)||(38352489-38352539)
chr4 (142-196)||(54083478-54083532)
chr4 (142-196)||(10431442-10431496)
chr4 (130-196)||(16882627-16882693)
chr4 (142-196)||(37514570-37514624)
chr4 (142-196)||(45560704-45560758)
chr4 (142-195)||(55255092-55255145)
chr4 (144-196)||(1105445-1105497)
chr4 (130-178)||(54779441-54779489)
chr4 (147-178)||(35463958-35463989)
chr4 (142-196)||(5128983-5129037)
chr4 (142-196)||(17679229-17679283)
chr4 (142-196)||(47127993-47128047)
chr4 (142-196)||(48208462-48208516)
chr4 (146-195)||(38209842-38209891)
chr4 (130-178)||(3850595-3850643)
[»] chr3 (21 HSPs)
chr3 (129-196)||(44708281-44708348)
chr3 (130-193)||(48156942-48157005)
chr3 (125-196)||(53507117-53507188)
chr3 (127-196)||(43207474-43207543)
chr3 (129-196)||(9878919-9878986)
chr3 (142-196)||(50939468-50939522)
chr3 (142-196)||(34290874-34290928)
chr3 (142-196)||(54407391-54407445)
chr3 (142-196)||(50258734-50258788)
chr3 (142-195)||(27078819-27078872)
chr3 (142-195)||(27084616-27084669)
chr3 (142-195)||(36716276-36716329)
chr3 (142-195)||(38681348-38681401)
chr3 (147-196)||(48720530-48720579)
chr3 (142-195)||(54619454-54619507)
chr3 (142-196)||(3954852-3954906)
chr3 (142-196)||(13795199-13795253)
chr3 (127-176)||(11467754-11467803)
chr3 (141-178)||(25373642-25373679)
chr3 (146-195)||(36605862-36605911)
chr3 (144-196)||(53149457-53149509)
[»] chr6 (14 HSPs)
chr6 (127-196)||(17353756-17353825)
chr6 (128-196)||(20711952-20712020)
chr6 (129-196)||(28075587-28075654)
chr6 (130-196)||(19986966-19987032)
chr6 (142-196)||(27788922-27788976)
chr6 (127-189)||(235466-235528)
chr6 (142-196)||(23070889-23070943)
chr6 (142-195)||(13727650-13727703)
chr6 (142-196)||(12083640-12083694)
chr6 (142-196)||(19741223-19741277)
chr6 (146-196)||(30832667-30832717)
chr6 (142-183)||(21280345-21280386)
chr6 (142-195)||(21479296-21479349)
chr6 (142-183)||(27314777-27314818)
[»] chr5 (16 HSPs)
chr5 (129-196)||(38869593-38869660)
chr5 (142-196)||(16199026-16199080)
chr5 (128-196)||(16799556-16799624)
chr5 (142-196)||(27923897-27923951)
chr5 (149-196)||(9364113-9364160)
chr5 (130-196)||(40389765-40389831)
chr5 (142-196)||(15480229-15480283)
chr5 (142-196)||(19523105-19523159)
chr5 (142-195)||(34756615-34756668)
chr5 (146-190)||(7670743-7670787)
chr5 (133-177)||(28822576-28822620)
chr5 (144-196)||(30853280-30853332)
chr5 (142-196)||(16592845-16592899)
chr5 (142-196)||(31881590-31881644)
chr5 (142-196)||(36188019-36188073)
chr5 (145-193)||(22987470-22987518)
[»] chr7 (14 HSPs)
chr7 (130-196)||(47985202-47985268)
chr7 (129-196)||(38415108-38415175)
chr7 (142-196)||(48984077-48984131)
chr7 (142-196)||(24525918-24525972)
chr7 (131-196)||(25010254-25010319)
chr7 (129-196)||(19691896-19691964)
chr7 (145-196)||(20091514-20091565)
chr7 (142-196)||(23551305-23551359)
chr7 (142-196)||(28749593-28749647)
chr7 (129-196)||(10329643-10329710)
chr7 (142-196)||(12596429-12596483)
chr7 (128-178)||(26253067-26253117)
chr7 (142-195)||(18777019-18777072)
chr7 (130-174)||(223552-223596)
[»] chr2 (14 HSPs)
chr2 (130-196)||(26715931-26715997)
chr2 (142-196)||(9045844-9045898)
chr2 (142-196)||(27506975-27507029)
chr2 (144-196)||(24410250-24410302)
chr2 (142-196)||(10762799-10762853)
chr2 (142-195)||(4505691-4505744)
chr2 (151-196)||(8327488-8327533)
chr2 (142-196)||(3952911-3952965)
chr2 (142-195)||(3155015-3155068)
chr2 (142-195)||(6964804-6964857)
chr2 (142-196)||(7162689-7162743)
chr2 (142-196)||(12337689-12337743)
chr2 (142-195)||(34693159-34693212)
chr2 (142-195)||(34715571-34715624)
[»] chr8 (12 HSPs)
chr8 (128-196)||(42600582-42600650)
chr8 (142-192)||(10917206-10917256)
chr8 (142-196)||(23606855-23606909)
chr8 (127-196)||(23798495-23798564)
chr8 (142-196)||(20003876-20003930)
chr8 (142-195)||(2952473-2952526)
chr8 (142-195)||(3048774-3048827)
chr8 (142-195)||(5860996-5861049)
chr8 (128-178)||(45193876-45193926)
chr8 (142-196)||(45472203-45472257)
chr8 (142-195)||(30883122-30883175)
chr8 (135-179)||(4322502-4322546)
[»] chr1 (21 HSPs)
chr1 (129-196)||(9173255-9173322)
chr1 (129-196)||(27559446-27559513)
chr1 (142-196)||(1367111-1367165)
chr1 (142-196)||(13913716-13913770)
chr1 (142-196)||(40502024-40502078)
chr1 (129-192)||(44895466-44895529)
chr1 (128-195)||(51607674-51607741)
chr1 (146-196)||(19955547-19955597)
chr1 (142-196)||(14146217-14146271)
chr1 (142-196)||(17168781-17168835)
chr1 (142-196)||(23181723-23181777)
chr1 (142-195)||(27906949-27907002)
chr1 (142-195)||(44655551-44655604)
chr1 (142-178)||(5027992-5028028)
chr1 (142-196)||(3406335-3406389)
chr1 (142-196)||(3440431-3440485)
chr1 (142-196)||(6771708-6771762)
chr1 (142-196)||(6888481-6888535)
chr1 (142-196)||(10912094-10912148)
chr1 (128-178)||(12037587-12037637)
chr1 (142-196)||(41697279-41697333)
[»] scaffold0039 (1 HSPs)
scaffold0039 (130-196)||(106379-106445)
[»] scaffold0027 (1 HSPs)
scaffold0027 (128-196)||(4147-4215)
[»] scaffold0070 (1 HSPs)
scaffold0070 (142-196)||(1023-1077)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 16844724 - 16844893
Alignment:
Q  27 gttgaataaatgatcaagacttaattgcttcaacttttgaacnnnnnnnnnatctcaatgtctcctggttggtaggtagcccacatttaggtaaatcgag 126  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16844724 gttgaataaatgatcaagacttaattgcttcaacttttgaactttttttttatctcaatgtctcctggttggtaggtagcccacatttaggtaaatcgag 16844823  T
Q  127 aatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  16844824 gatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 16844893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 37777525 - 37777459
Alignment:
Q  130 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  37777525 caggcccggccttgagggggtgcaaacagctcaacagagctggacctccctcaatcatgggcctcaa 37777459  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 24969254 - 24969308
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  24969254 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 24969308  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 40089328 - 40089390
Alignment:
Q  133 gcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  40089328 gcccggccatgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 40089390  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 2791042 - 2790981
Alignment:
Q  128 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgg 189  Q
    |||||||||| || |||||||||||||||||||||||||||||||| |||| ||| ||||||    
T  2791042 atcaggcccgactctgagggggtgcaaacagctcaacagagctgggtctccctcagtcatgg 2790981  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 35780625 - 35780574
Alignment:
Q  127 aatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctcc 178  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||||||||    
T  35780625 aatcaggcccggctccgagggggtgcaaacagctcaaccgagctgggcctcc 35780574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 19498313 - 19498379
Alignment:
Q  130 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||  ||| |||||||||| |||||||||| |||||||||||  ||||||||||||||||    
T  19498313 caggcccggccctgacggggtgcaaatagctcaacagtgctgggcctcccccaatcatgggcctcaa 19498379  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 32128404 - 32128458
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||||||||| ||| | |||| ||||||    
T  32128404 tgagggggtgcaaacagctcaacagagctgggcctccctcagttatggacctcaa 32128458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 34027388 - 34027454
Alignment:
Q  130 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||| |||| |||||| |||||||| |||||||||||||||| |||| ||| |||||||||||||    
T  34027388 caggcctggctctgagggagtgcaaactgctcaacagagctgggtctccctcagtcatgggcctcaa 34027454  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 38352539 - 38352489
Alignment:
Q  146 ggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||||| | | |||||||||||||    
T  38352539 ggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 38352489  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 54083532 - 54083478
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||    
T  54083532 tgagggggtgcaaacagctcaatagagctgggcatccctcagtcatgggcctcaa 54083478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 10431496 - 10431442
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  10431496 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 10431442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 16882693 - 16882627
Alignment:
Q  130 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||| | ||||| ||||||||||||||||||||||||||| ||| | | ||||| |||||||    
T  16882693 caggcccggttctgaggaggtgcaaacagctcaacagagctgggcttcccttagtcatgagcctcaa 16882627  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 37514570 - 37514624
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  |||||||||||||| |||  |||||||||||    
T  37514570 tgagggggtgcaaacagctcaaacgagctgggcctcctccaaggatgggcctcaa 37514624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 45560758 - 45560704
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  45560758 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctcaa 45560704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 55255092 - 55255145
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  55255092 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 55255145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 1105445 - 1105497
Alignment:
Q  144 agggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  1105445 agggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 1105497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 54779441 - 54779489
Alignment:
Q  130 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctcc 178  Q
    ||||||||||  |||||| |||||||||||||||| |||||||||||||    
T  54779441 caggcccggccctgagggagtgcaaacagctcaaccgagctgggcctcc 54779489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 178
Target Start/End: Original strand, 35463958 - 35463989
Alignment:
Q  147 gggtgcaaacagctcaacagagctgggcctcc 178  Q
    ||||||||||||||||||||||||||||||||    
T  35463958 gggtgcaaacagctcaacagagctgggcctcc 35463989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 5129037 - 5128983
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  || ||||||||    
T  5129037 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggataggcctcaa 5128983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 17679229 - 17679283
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  |||||| |||||| ||||  |||||||||||    
T  17679229 tgagggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaa 17679283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 47127993 - 47128047
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||||||||||||||| |||  ||||||||||||| ||||  |||||||||||    
T  47127993 tgagggggtgcaaacagcccaaacgagctgggcctccctcaaggatgggcctcaa 47128047  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 48208462 - 48208516
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||| ||||||||| ||||  |||||||||||    
T  48208462 tgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaa 48208516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 38209891 - 38209842
Alignment:
Q  146 ggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  38209891 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38209842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 3850595 - 3850643
Alignment:
Q  130 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctcc 178  Q
    |||| ||||| ||||||||||||||||||||  || |||||||||||||    
T  3850595 cagggccggccatgagggggtgcaaacagctatactgagctgggcctcc 3850643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 44708281 - 44708348
Alignment:
Q  129 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  44708281 tcaggcccggctctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 44708348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 48156942 - 48157005
Alignment:
Q  130 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcct 193  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48156942 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcaatcatgggcct 48157005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 53507188 - 53507117
Alignment:
Q  125 agaatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  53507188 agaagcaggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 53507117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 43207543 - 43207474
Alignment:
Q  127 aatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  43207543 aatcaggcccggtcctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 43207474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 9878986 - 9878919
Alignment:
Q  129 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  9878986 tcaggtccggccctgagggggtgcaaacagctcaacagagctgggcctcccttaatcatgggcctcaa 9878919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 50939522 - 50939468
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  50939522 tgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 50939468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 34290928 - 34290874
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||| ||||||||| |||  ||||||||||||    
T  34290928 tgagggggtgcaaacagctcaacagagttgggcctccctcaggcatgggcctcaa 34290874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 54407445 - 54407391
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  54407445 tgaggaggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 54407391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 50258788 - 50258734
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  50258788 tgagggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaa 50258734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 27078872 - 27078819
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  27078872 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27078819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 27084669 - 27084616
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  27084669 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27084616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 36716329 - 36716276
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  36716329 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36716276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 38681401 - 38681348
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  38681401 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38681348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 48720579 - 48720530
Alignment:
Q  147 gggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||| || ||| ||| |||||||||||||    
T  48720579 gggtgcaaacagctcaacagagctgagcttccctcagtcatgggcctcaa 48720530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 54619507 - 54619454
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  54619507 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 54619454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 3954906 - 3954852
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||| ||||||    
T  3954906 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 3954852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 13795199 - 13795253
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||| |||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  13795199 tgagggcgtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 13795253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 11467754 - 11467803
Alignment:
Q  127 aatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcct 176  Q
    ||||||| | ||| ||||||||||||||||||||| || |||||||||||    
T  11467754 aatcagggctggccatgagggggtgcaaacagctctactgagctgggcct 11467803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 25373679 - 25373642
Alignment:
Q  141 atgagggggtgcaaacagctcaacagagctgggcctcc 178  Q
    ||||||||||||||||||||| || |||||||||||||    
T  25373679 atgagggggtgcaaacagctctactgagctgggcctcc 25373642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 36605862 - 36605911
Alignment:
Q  146 ggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  36605862 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36605911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 53149509 - 53149457
Alignment:
Q  144 agggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||  |||||||||||||  |||  |||||||||||    
T  53149509 agggggtgcaaacagctcaaacgagctgggcctccaccaaggatgggcctcaa 53149457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 17353756 - 17353825
Alignment:
Q  127 aatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  17353756 aatcaggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 17353825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 20712020 - 20711952
Alignment:
Q  128 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  20712020 atcaggcccggccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 20711952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 28075587 - 28075654
Alignment:
Q  129 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||    
T  28075587 tcaggcccggctctgagggggtgcaaacagctcaacagagctaggcttccttcagtcatgggcttcaa 28075654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 19986966 - 19987032
Alignment:
Q  130 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||  | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  19986966 caggcccggccctaagggggtgcaaacagctcaacagagctgggcctccctcaattatgggcctcaa 19987032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 27788976 - 27788922
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  27788976 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 27788922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 235528 - 235466
Alignment:
Q  127 aatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgg 189  Q
    ||||||||||| |  ||||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  235528 aatcaggcccgtccctgagggggtgcaaacagcttaacagagctgggcctccctcagtcatgg 235466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 23070943 - 23070889
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  23070943 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 23070889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 13727703 - 13727650
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  13727703 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctca 13727650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 12083694 - 12083640
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||| | ||||  |||||||||||    
T  12083694 tgagggggtgcaaacagctcaaacgagctgggccttcctcaaggatgggcctcaa 12083640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 19741277 - 19741223
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||| ||||||    
T  19741277 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 19741223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 30832717 - 30832667
Alignment:
Q  146 ggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  30832717 ggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaa 30832667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 21280345 - 21280386
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaa 183  Q
    ||||||||||||||||||||||  ||||||||||||| ||||    
T  21280345 tgagggggtgcaaacagctcaaacgagctgggcctccctcaa 21280386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 21479296 - 21479349
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||  ||||||||||    
T  21479296 tgagggggtgcaaacagctaaaacgagctgggcctccctcaaggatgggcctca 21479349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 27314818 - 27314777
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaa 183  Q
    ||||||||||||||||||||||  ||||||||||||| ||||    
T  27314818 tgagggggtgcaaacagctcaaacgagctgggcctccctcaa 27314777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 38869660 - 38869593
Alignment:
Q  129 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||    
T  38869660 tcaggcccggccatgagggggtgcaaacagctcaacaaagctgggcctccctcagtcatgggcctcaa 38869593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 16199080 - 16199026
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  16199080 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 16199026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 16799624 - 16799556
Alignment:
Q  128 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||| ||||||| |||||||||||||||||||||| |||||| ||||||| ||| |||||||||||||    
T  16799624 atcagccccggctttgagggggtgcaaacagctcaatagagctaggcctccctcagtcatgggcctcaa 16799556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 27923897 - 27923951
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  27923897 tgagggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 27923951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 9364113 - 9364160
Alignment:
Q  149 gtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  9364113 gtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 9364160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 40389831 - 40389765
Alignment:
Q  130 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||  |||| ||||||||||||||||||||| |||||||||| ||| |||||| ||||||    
T  40389831 caggcccggccctgagcgggtgcaaacagctcaacagacctgggcctccctcagtcatggacctcaa 40389765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 15480283 - 15480229
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  15480283 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 15480229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 19523105 - 19523159
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  19523105 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 19523159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 34756668 - 34756615
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  34756668 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 34756615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 7670743 - 7670787
Alignment:
Q  146 ggggtgcaaacagctcaacagagctgggcctccttcaatcatggg 190  Q
    ||||||||||||||||||||||| ||||||||| ||| |||||||    
T  7670743 ggggtgcaaacagctcaacagagttgggcctccctcagtcatggg 7670787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 28822620 - 28822576
Alignment:
Q  133 gcccggctatgagggggtgcaaacagctcaacagagctgggcctc 177  Q
    |||||| | ||||||||||||||||||||||||||| ||||||||    
T  28822620 gcccggttctgagggggtgcaaacagctcaacagagttgggcctc 28822576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 30853280 - 30853332
Alignment:
Q  144 agggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||  ||||||||||||||||||  |||| ||||||    
T  30853280 agggggtgcaaacagctcaaacgagctgggcctccttcaaggatggacctcaa 30853332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 16592899 - 16592845
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||| ||||||| ||  |||||||||||    
T  16592899 tgagggggtgcaaacagctcaaacgagctggacctcctttaaggatgggcctcaa 16592845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 31881644 - 31881590
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||| ||||||    
T  31881644 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 31881590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 36188073 - 36188019
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||| ||||||||| ||||  |||||||||||    
T  36188073 tgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaa 36188019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 22987518 - 22987470
Alignment:
Q  145 gggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcct 193  Q
    |||||||||||||||||||  ||||||||||||| ||||  ||||||||    
T  22987518 gggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcct 22987470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 47985268 - 47985202
Alignment:
Q  130 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  47985268 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 47985202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 38415175 - 38415108
Alignment:
Q  129 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||| | | |||||||||||||    
T  38415175 tcaggcccggctctgaggggatgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 38415108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 48984131 - 48984077
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  48984131 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 48984077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 24525972 - 24525918
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||||||||| | | |||||||||||||    
T  24525972 tgagggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 24525918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 25010254 - 25010319
Alignment:
Q  131 aggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||||||  ||||||||| ||||||||||||||||| ||||||||| ||| |||||||||||||    
T  25010254 aggcccggccctgagggggtacaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 25010319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 19691896 - 19691964
Alignment:
Q  129 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatc-atgggcctcaa 196  Q
    ||||||||| |  ||||||||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  19691896 tcaggcccgaccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcaatgggcctcaa 19691964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 20091565 - 20091514
Alignment:
Q  145 gggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  20091565 gggggtgcaaacagctcaatagagctgggcctccctcagtcatgggcctcaa 20091514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 23551359 - 23551305
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||||||||||||||||||| |||| ||| ||||| |||||||||||||||||    
T  23551359 tgagggggtgcaaacagctcaatagagttggacctccctcaatcatgggcctcaa 23551305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 28749593 - 28749647
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  28749593 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 28749647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 10329710 - 10329643
Alignment:
Q  129 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||   ||||||||||||||||| ||||||| ||| || |||| ||| |||||||||||||    
T  10329710 tcaggcccggtcctgagggggtgcaaacagttcaacagcgctaggtctccctcagtcatgggcctcaa 10329643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 12596483 - 12596429
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||| ||||||    
T  12596483 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggccctcaa 12596429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 26253067 - 26253117
Alignment:
Q  128 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctcc 178  Q
    |||||| |||||| ||||||||||||||||||||  | |||||||||||||    
T  26253067 atcagggccggctttgagggggtgcaaacagctcttctgagctgggcctcc 26253117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 18777072 - 18777019
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||| ||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  18777072 tgaggaggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 18777019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 223552 - 223596
Alignment:
Q  130 caggcccggctatgagggggtgcaaacagctcaacagagctgggc 174  Q
    |||| ||||| ||||||||||||||||||||| || |||||||||    
T  223552 cagggccggcaatgagggggtgcaaacagctctactgagctgggc 223596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 26715931 - 26715997
Alignment:
Q  130 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  26715931 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 26715997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 9045844 - 9045898
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  9045844 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 9045898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 27507029 - 27506975
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  27507029 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 27506975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 24410250 - 24410302
Alignment:
Q  144 agggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  24410250 agggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 24410302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 10762853 - 10762799
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  10762853 tgaggggatgcaaacagctcaacagagctgggcttccctcaatcatgggcctcaa 10762799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 4505691 - 4505744
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||| ||||||||||    
T  4505691 tgagggggtgcaaacagctcaaacgagctgggcctccctcaatgatgggcctca 4505744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 8327488 - 8327533
Alignment:
Q  151 gcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||    
T  8327488 gcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 8327533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 3952911 - 3952965
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  3952911 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 3952965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 3155015 - 3155068
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  3155015 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3155068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 6964804 - 6964857
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  6964804 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 6964857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 7162689 - 7162743
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  |||||||||||||  |||  |||||||||||    
T  7162689 tgagggggtgcaaacagctcaaacgagctgggcctcccacaaggatgggcctcaa 7162743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 12337743 - 12337689
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  |||||| |||||| ||||  |||||||||||    
T  12337743 tgagggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaa 12337689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 34693159 - 34693212
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||| ||||||||| ||||  ||||||||||    
T  34693159 tgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctca 34693212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 34715571 - 34715624
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||| ||||||||| ||||  ||||||||||    
T  34715571 tgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctca 34715624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 42600582 - 42600650
Alignment:
Q  128 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  42600582 atcaggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 42600650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 10917206 - 10917256
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcc 192  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  10917206 tgagggggtgcaaacagctcaacagagctgggcctccctcactcatgggcc 10917256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 23606909 - 23606855
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  23606909 tgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 23606855  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 23798564 - 23798495
Alignment:
Q  127 aatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||| |||  ||||||||||| |||||||||||| |||||||||||| ||| |||||||||||||    
T  23798564 aatcaggcctggccttgagggggtgcgaacagctcaacaaagctgggcctccctcagtcatgggcctcaa 23798495  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 20003930 - 20003876
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  20003930 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 20003876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 2952526 - 2952473
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  2952526 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 2952473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 3048827 - 3048774
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  3048827 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3048774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 5861049 - 5860996
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  5861049 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 5860996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 45193926 - 45193876
Alignment:
Q  128 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctcc 178  Q
    |||||| |||||| || || |||||||||||||| ||||||||||||||||    
T  45193926 atcagggccggctctggggaggtgcaaacagctctacagagctgggcctcc 45193876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 45472203 - 45472257
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||| |||||||||| ||  |||  |||||||||||    
T  45472203 tgagggggtgcaaacagctcaaccgagctgggccacccccaaggatgggcctcaa 45472257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 30883122 - 30883175
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    |||| |||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  30883122 tgagtgggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 30883175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 4322546 - 4322502
Alignment:
Q  135 ccggctatgagggggtgcaaacagctcaacagagctgggcctcct 179  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||||    
T  4322546 ccggccatgagggggtgcaaacagctctattgagctgggcctcct 4322502  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 9173322 - 9173255
Alignment:
Q  129 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||||||||  ||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  9173322 tcaggcccggccctgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 9173255  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 27559446 - 27559513
Alignment:
Q  129 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  27559446 tcaggcccggttttgagggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 27559513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 1367165 - 1367111
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  1367165 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 1367111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 13913770 - 13913716
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  13913770 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 13913716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 40502078 - 40502024
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  40502078 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 40502024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 44895466 - 44895529
Alignment:
Q  129 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcc 192  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  44895466 tcaggctcggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcc 44895529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 51607741 - 51607674
Alignment:
Q  128 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    |||||||||||  |||||| |||||||||||||||| |||||||||||| | ||||||||||||||||    
T  51607741 atcaggcccggtcatgaggtggtgcaaacagctcaatagagctgggccttcctcaatcatgggcctca 51607674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 19955547 - 19955597
Alignment:
Q  146 ggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  19955547 ggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 19955597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 14146217 - 14146271
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  14146217 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 14146271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 17168781 - 17168835
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||| |||||||||||||| |||||| ||||||| ||| |||||||||||||    
T  17168781 tgaggggatgcaaacagctcaatagagcttggcctccctcagtcatgggcctcaa 17168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 23181723 - 23181777
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||| |||||||||| ||  |||| |||||||||||    
T  23181723 tgagggggtgcaaacagctcaaccgagctgggccacccccaatgatgggcctcaa 23181777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 27907002 - 27906949
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  27907002 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27906949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 44655551 - 44655604
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 195  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  44655551 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 44655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 5028028 - 5027992
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctcc 178  Q
    ||||||||||||||||||||||| |||||||||||||    
T  5028028 tgagggggtgcaaacagctcaaccgagctgggcctcc 5027992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 3406335 - 3406389
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  |||||||||||||  |||  |||||||||||    
T  3406335 tgagggggtgcaaacagctcaaacgagctgggcctcccccaaggatgggcctcaa 3406389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 3440485 - 3440431
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  |||||||||||||  |||  |||||||||||    
T  3440485 tgagggggtgcaaacagctcaaacgagctgggcctcccccaaggatgggcctcaa 3440431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 6771708 - 6771762
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| | ||  |||||||||||    
T  6771708 tgagggggtgcaaacagctcaaacgagctgggcctcccttaaggatgggcctcaa 6771762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 6888481 - 6888535
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||| ||||||||| ||||  |||||||||||    
T  6888481 tgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaa 6888535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 10912148 - 10912094
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||| ||||||||||  |||||||||||||| |||  |||||||||||    
T  10912148 tgagggggtgcgaacagctcaaacgagctgggcctcctccaaggatgggcctcaa 10912094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 12037587 - 12037637
Alignment:
Q  128 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctcc 178  Q
    |||||| ||| || |||||||||||||||||||| || |||||||||||||    
T  12037587 atcagggccgtctttgagggggtgcaaacagctctactgagctgggcctcc 12037637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 41697333 - 41697279
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||| ||||    
T  41697333 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcatcaa 41697279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 106379 - 106445
Alignment:
Q  130 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||  |||| |||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  106379 caggcccggccctgagagggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 106445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 4147 - 4215
Alignment:
Q  128 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    |||||| |||||  |||| ||||||||||||||||||||||||||||||||| || |||||||||||||    
T  4147 atcagggccggccctgagagggtgcaaacagctcaacagagctgggcctcctccagtcatgggcctcaa 4215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 1023 - 1077
Alignment:
Q  142 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 196  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||| ||||||    
T  1023 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 1077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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