View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_56 (Length: 235)
Name: NF0568_low_56
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 34437312 - 34437083
Alignment:
| Q |
1 |
tccgatgtgactcataggataatactgtgatattgcagttgagtttgaatagctctggagcagtagcttcagttccaaattcatcattctttggaaccag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34437312 |
tccgatgtgactcataggataatactgtgatattgcagttgagtttgaatagctctggagcagtagcttcagttccaagttcatcattctttggaaccag |
34437213 |
T |
|
| Q |
101 |
cttaaagaaagttacctcgaggttaccaaacacaaaggtttcatctggaagattcaaaattgttgctgctgagattgatgaaagcaagcaaactgacaaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34437212 |
cttaaagaaagttacctcgaggttaccaaacacaaaggtttcatctggaagattcaaaattgttgctgctgagattaatgaaagcaagcaaactgacaaa |
34437113 |
T |
|
| Q |
201 |
gacaaatggagaggtttggcctatgatact |
230 |
Q |
| |
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|||| ||||||||||||||||||||||||| |
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| T |
34437112 |
gacagatggagaggtttggcctatgatact |
34437083 |
T |
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