View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_6 (Length: 519)
Name: NF0568_low_6
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 41 - 510
Target Start/End: Complemental strand, 5688818 - 5688376
Alignment:
| Q |
41 |
atgagaatatgtgtagagctctcaaaatgggttatctaaccttaaacagatcggccttaacaacctttatcgcgttaggccaaaaagttctttcaagtat |
140 |
Q |
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| T |
5688818 |
atgagattatgtgtagagctctcaaaatgggttatctaaccttaaagagatcggccctaacaacctttatcgctttaggccaaaaagttctttcaagtac |
5688719 |
T |
|
| Q |
141 |
gagctataaaaatactatatgaagtcggccctatgtatgagttgttgattaaaaaggtaagaccttatttannnnnnngaaaatattataaagactctca |
240 |
Q |
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| T |
5688718 |
gagctataaaaatactatatgaagtcggccctatgtatgagttgttgattaaaaaggtaagaccttatttatttttttgaaaatattataaagactctca |
5688619 |
T |
|
| Q |
241 |
caaaatttcttataaacattattttgnnnnnnnntctgagactatattttatgattcaaactctacattttattagatttggcgggctagcccattttta |
340 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5688618 |
caaaatttcttataaacattattttgaaaaaaaatctgagactatattttatggttcaaactctacattttattagatttggcgggctagcccattttta |
5688519 |
T |
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| Q |
341 |
caactctaaatatgtatgtggaacctgtaagtgaagttggtagtgatggaggtgaagttgtgcgtcttagaccagccttttgtttactcataatgttgta |
440 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5688518 |
ca---------------gtggaacctgtaagtgaagttggtagtgatggaggtgaagtt------------ccagccttttgtttactcataatgttgta |
5688446 |
T |
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| Q |
441 |
ctggcgggagctgcaaaccatccccagccataagaaatgattgtcattagttagaattatcgagaattat |
510 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
5688445 |
ctggcgggagctgcaaaccatcccccgccataagaaatgattgtcattagttcgaattatcgaggattat |
5688376 |
T |
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