View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0568_low_9 (Length: 491)
Name: NF0568_low_9
Description: NF0568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0568_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 29 - 388
Target Start/End: Original strand, 8892454 - 8892815
Alignment:
| Q |
29 |
agaggcaagtattctttttattttagtttgcttcatggaaacccatgcatgcatacgaactcaacttacacaaacatagttgaaagtcgtaa-taacaaa |
127 |
Q |
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| T |
8892454 |
agaggcaagtattctttttattttagtttgcttcatgaaaacccatgcatgcatacgaactcaacttacacaaacatagttgaaaatcgtaagtaacaaa |
8892553 |
T |
|
| Q |
128 |
ctcaactgacgcaaacatagttgaaaattgtaagtgattccaactgtccaagatccaaatatcatacgtagaattatatgtaattgtgggtttcctatgt |
227 |
Q |
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| T |
8892554 |
ctcaactgacgcaaacatagttgaaaattgtaagtgattccaactgtccaagatccaaatatcatacgtaaaattatacgtaattgtgggtttcctatgt |
8892653 |
T |
|
| Q |
228 |
acaatttttgtacttcttagaaagaatcaaattgtactcccaaatttacaaaacttgcatattatgcgcatcaaacacttgtact-aacctaaatggtgg |
326 |
Q |
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| T |
8892654 |
acaatttttgtacttcttagaaagaatcaaattgtactcccaaatttacaaaacttgcatattatgcgcatcaaacacttgtactaaacctaaatggtgt |
8892753 |
T |
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| Q |
327 |
tttcccatactcgtcacattgcacaatgtgtggctttaagtactttataaccatcttgtctt |
388 |
Q |
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| T |
8892754 |
tttcccatactcgtcacattgcacaatgtgtggctttaagtactttataaccatcttgtctt |
8892815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 483
Target Start/End: Original strand, 8892854 - 8892895
Alignment:
| Q |
442 |
ttcaagattttttcttacacttgtttgtactttatattcttc |
483 |
Q |
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| T |
8892854 |
ttcaagattttttcttacacttgtttgtactttatattcttc |
8892895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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