View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0570_high_4 (Length: 427)
Name: NF0570_high_4
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0570_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 23408458 - 23408821
Alignment:
| Q |
1 |
tacacaaaagacatcaacagatcccattagttcattacaactcagaaaattaaaacactaagaaaccaataaacataaacgaaatgtctaagagcttgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
23408458 |
tacacaaaagacatcaacagatcccattagttcattacaactcagaaaattaaaacactaagaaaccaataaacataatcgaaatgtctaagagctagta |
23408557 |
T |
|
| Q |
101 |
aacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
23408558 |
aacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttcccttgaagtgattg |
23408657 |
T |
|
| Q |
201 |
ttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
23408658 |
ttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttga |
23408757 |
T |
|
| Q |
301 |
gataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23408758 |
gataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctaca |
23408821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 86 - 360
Target Start/End: Original strand, 23415712 - 23415986
Alignment:
| Q |
86 |
gtctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
185 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415712 |
gtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
23415811 |
T |
|
| Q |
186 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcc |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
23415812 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacc |
23415911 |
T |
|
| Q |
286 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
360 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23415912 |
catggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23415986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 87 - 364
Target Start/End: Original strand, 23453376 - 23453653
Alignment:
| Q |
87 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
186 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23453376 |
tctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttc |
23453475 |
T |
|
| Q |
187 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
23453476 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc |
23453575 |
T |
|
| Q |
287 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca |
364 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23453576 |
atggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctaca |
23453653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 87 - 360
Target Start/End: Complemental strand, 23869006 - 23868733
Alignment:
| Q |
87 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
186 |
Q |
| |
|
||||||| || || |||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23869006 |
tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttc |
23868907 |
T |
|
| Q |
187 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868906 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattccc |
23868807 |
T |
|
| Q |
287 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23868806 |
atggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23868733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 87 - 360
Target Start/End: Complemental strand, 24307497 - 24307224
Alignment:
| Q |
87 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
186 |
Q |
| |
|
||||||| || || ||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24307497 |
tctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttc |
24307398 |
T |
|
| Q |
187 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307397 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattccc |
24307298 |
T |
|
| Q |
287 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
24307297 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttc |
24307224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 87 - 364
Target Start/End: Complemental strand, 23402348 - 23402071
Alignment:
| Q |
87 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
186 |
Q |
| |
|
||||||| || |||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23402348 |
tctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttc |
23402249 |
T |
|
| Q |
187 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
23402248 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc |
23402149 |
T |
|
| Q |
287 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca |
364 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23402148 |
atggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctaca |
23402071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 87 - 360
Target Start/End: Complemental strand, 23886101 - 23885828
Alignment:
| Q |
87 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
186 |
Q |
| |
|
||||||| || |||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23886101 |
tctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttc |
23886002 |
T |
|
| Q |
187 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
23886001 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc |
23885902 |
T |
|
| Q |
287 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
360 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23885901 |
atggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23885828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 87 - 360
Target Start/End: Complemental strand, 26833009 - 26832736
Alignment:
| Q |
87 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
186 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||| |
|
|
| T |
26833009 |
tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc |
26832910 |
T |
|
| Q |
187 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
26832909 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgataccc |
26832810 |
T |
|
| Q |
287 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
26832809 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26832736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 87 - 360
Target Start/End: Complemental strand, 26434298 - 26434025
Alignment:
| Q |
87 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
186 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||| |
|
|
| T |
26434298 |
tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc |
26434199 |
T |
|
| Q |
187 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
26434198 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgataccc |
26434099 |
T |
|
| Q |
287 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
360 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
26434098 |
atggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26434025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 87 - 360
Target Start/End: Complemental strand, 26436078 - 26435805
Alignment:
| Q |
87 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
186 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||| || |||||||| ||||| || ||||||||||| |
|
|
| T |
26436078 |
tctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc |
26435979 |
T |
|
| Q |
187 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
26435978 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgataccc |
26435879 |
T |
|
| Q |
287 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
26435878 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26435805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 87 - 360
Target Start/End: Original strand, 34662045 - 34662318
Alignment:
| Q |
87 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
186 |
Q |
| |
|
||||||| ||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |||||||||||||| || || |||||||||||||| |
|
|
| T |
34662045 |
tctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttc |
34662144 |
T |
|
| Q |
187 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
286 |
Q |
| |
|
||| ||||| || || ||||||||||| || | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
34662145 |
cctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataataccc |
34662244 |
T |
|
| Q |
287 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
360 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
34662245 |
atggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttc |
34662318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 139 - 271
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
| Q |
139 |
cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct |
238 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
23451788 |
cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct |
23451887 |
T |
|
| Q |
239 |
tgagcaagcttctcgaagatatcattgatgaaa |
271 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||| |
|
|
| T |
23451888 |
tgagcgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 24307186 - 24307157
Alignment:
| Q |
398 |
gcagcggaaccaccttcctttggtagcttc |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24307186 |
gcagcggaaccaccttcctttggtagcttc |
24307157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 110 - 360
Target Start/End: Complemental strand, 41670651 - 41670401
Alignment:
| Q |
110 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
209 |
Q |
| |
|
||||||||||| || ||||| ||||||||||| || | |||||| || |||||||| | || |||||||| || |||| ||||||||||| ||||||| |
|
|
| T |
41670651 |
acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct |
41670552 |
T |
|
| Q |
210 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
309 |
Q |
| |
|
||||||| | ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
41670551 |
tgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaat |
41670452 |
T |
|
| Q |
310 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
360 |
Q |
| |
|
||| || ||||| || || || || ||||| |||||||||||||| ||||| |
|
|
| T |
41670451 |
gtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttc |
41670401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 90 - 363
Target Start/End: Complemental strand, 40796040 - 40795767
Alignment:
| Q |
90 |
aagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccct |
189 |
Q |
| |
|
||||||||||||| ||||| || || ||||| || || || ||||| |||||||| | ||| || |||||||| || | || ||||||||||| || | |
|
|
| T |
40796040 |
aagagcttgtaaatttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacg |
40795941 |
T |
|
| Q |
190 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatg |
289 |
Q |
| |
|
|| ||||| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| |
|
|
| T |
40795940 |
agaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccata |
40795841 |
T |
|
| Q |
290 |
gctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctac |
363 |
Q |
| |
|
|| ||||| ||||| |||||||| || ||||| || || || || ||||| |||||||||||||| |||||||| |
|
|
| T |
40795840 |
gccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac |
40795767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 33216708 - 33216594
Alignment:
| Q |
98 |
gtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtga |
197 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
33216708 |
gtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttccttgaagtga |
33216609 |
T |
|
| Q |
198 |
ttgttggcttcttgt |
212 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33216608 |
ttgttggcttcttgt |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 110 - 360
Target Start/End: Complemental strand, 29391717 - 29391467
Alignment:
| Q |
110 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
209 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || ||||||||||| |||||||| | | || || || ||||| ||||| || || || || || |||| |
|
|
| T |
29391717 |
acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccctcgacgtaatcgtcggtttct |
29391618 |
T |
|
| Q |
210 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
309 |
Q |
| |
|
||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| |||||| || ||||| || |
|
|
| T |
29391617 |
tgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctat |
29391518 |
T |
|
| Q |
310 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
360 |
Q |
| |
|
|| || ||||| ||||| || || ||||| ||||| ||||| || ||||| |
|
|
| T |
29391517 |
atcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc |
29391467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 45576477 - 45576399
Alignment:
| Q |
87 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag |
165 |
Q |
| |
|
||||||||||||| || || |||||||| ||||| || ||||||||| ||||||| ||||||||| | || |||||||| |
|
|
| T |
45576477 |
tctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaag |
45576399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
| Q |
232 |
tgattcttgagcaagcttctcgaagatatcattgatg |
268 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33216594 |
tgattcttgagcaagcttcacgaagatatcattgatg |
33216558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 47317554 - 47317431
Alignment:
| Q |
89 |
taagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccc |
188 |
Q |
| |
|
||||| || |||||||| |||||||| ||||| || ||||||||| |||| |||||||||||||||||||||| ||||||||| |||| |||||||||| |
|
|
| T |
47317554 |
taagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttccc |
47317455 |
T |
|
| Q |
189 |
ttgaagtgattgttggcttcttgt |
212 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
47317454 |
ttgaagtgattgttggcttcttgt |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 110 - 360
Target Start/End: Original strand, 40180297 - 40180547
Alignment:
| Q |
110 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
209 |
Q |
| |
|
|||||||| || ||||||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || ||||||| |
|
|
| T |
40180297 |
acagccttagtcccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttct |
40180396 |
T |
|
| Q |
210 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
309 |
Q |
| |
|
|||| || | ||| | | || ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || |
|
|
| T |
40180397 |
tgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgat |
40180496 |
T |
|
| Q |
310 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
360 |
Q |
| |
|
|| || ||||| |||||||| || ||||| ||||| |||||||| ||||| |
|
|
| T |
40180497 |
atcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttc |
40180547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
| Q |
232 |
tgattcttgagcaagcttctcgaagatatcattgatg |
268 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47317431 |
tgattcttgagcaagcttcacgaagatatcattgatg |
47317395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 14715485 - 14715433
Alignment:
| Q |
125 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt |
177 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
14715485 |
tcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagt |
14715433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 360
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
| Q |
235 |
ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact |
334 |
Q |
| |
|
||||||||| || |||| |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || || |
|
|
| T |
29684826 |
ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc |
29684727 |
T |
|
| Q |
335 |
ttgaatatgtagatcttgtatgtttc |
360 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
29684726 |
ttgaatatatatatcttgtaggtttc |
29684701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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