View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0570_high_5 (Length: 422)

Name: NF0570_high_5
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0570_high_5
NF0570_high_5
[»] chr3 (7 HSPs)
chr3 (22-413)||(28387887-28388278)
chr3 (267-398)||(28387485-28387604)
chr3 (359-400)||(27812586-27812627)
chr3 (359-398)||(11989536-11989575)
chr3 (360-405)||(5049279-5049324)
chr3 (359-403)||(2579111-2579155)
chr3 (359-403)||(31574267-31574311)
[»] chr4 (2 HSPs)
chr4 (299-399)||(53734905-53735005)
chr4 (359-398)||(21360478-21360517)
[»] chr6 (3 HSPs)
chr6 (359-398)||(10026161-10026200)
chr6 (359-398)||(13178477-13178516)
chr6 (362-398)||(10027124-10027160)
[»] chr1 (1 HSPs)
chr1 (359-398)||(33617142-33617181)
[»] chr8 (1 HSPs)
chr8 (298-348)||(1214635-1214685)
[»] chr2 (2 HSPs)
chr2 (298-344)||(20985488-20985534)
chr2 (359-403)||(341566-341610)
[»] chr7 (1 HSPs)
chr7 (362-398)||(1511211-1511247)


Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 22 - 413
Target Start/End: Original strand, 28387887 - 28388278
Alignment:
Q  22 cagtaaggcaaattgacagtaagggtttgagtttatttaattgagagaagtgggttgatagatggtggtgatgttgttggggaagagctgaattggtgta 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28387887 cagtaaggcaaattgacagtaagggtttgagtttatttaattgagagaagtgggttgatagatggtggtgatgttgttggggaagagctgaattggtgta 28387986  T
Q  122 ggttgtataagaggttggaaatgtgattcattttcagcatgaaatgatgatagagcgcacaaatatgatataggaaaacagaaatggtgaaggggatttt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28387987 ggttgtataagaggttggaaatgtgattcattttcagcatgaaatgatgatagagcgcacaaatatgatataggaaaacagaaatggtgaaggggatttt 28388086  T
Q  222 atgaagatatgtatttctgggttttattatgatgaagatatgagttttttgttatgaatttgctgggtttttgtagaaaaaggataatattgttaacatt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28388087 atgaagatatgtatttctgggttttattatgatgaagatatgagttttttgttatgaatttgctgggtttttgtagaaaaaggataatattgttaacatt 28388186  T
Q  322 taaaaagataaaggattgaaatgggaagnnnnnnnntaagataaaggaccaaaacattacctaaaattaagttaaggaattattagtataat 413  Q
    ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  28388187 taaaaagataaaggattgaaatgggaagaaaaaaaataagataaaggaccaaaacattacctaaaattaagttaagaaattattagtgtaat 28388278  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 267 - 398
Target Start/End: Complemental strand, 28387604 - 28387485
Alignment:
Q  267 tttttgttatgaatttgctgggtttttgtagaaaaaggataatattgttaacatttaaaaagataaaggattgaaatgggaagnnnnnnnntaagataaa 366  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||    ||         |||||||||    
T  28387604 tttttgttatgaatttgttgggtttttgtagaaaagggataatagtgttaacatttaaaaagataaaggattaaaa----aa--------ataagataaa 28387517  T
Q  367 ggaccaaaacattacctaaaattaagttaagg 398  Q
    |||||||||| |||||||||||||||||||||    
T  28387516 ggaccaaaacgttacctaaaattaagttaagg 28387485  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 27812627 - 27812586
Alignment:
Q  359 aagataaaggaccaaaacattacctaaaattaagttaaggaa 400  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  27812627 aagataaaggaccaaactattacctaaaattaagttaaggaa 27812586  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 11989575 - 11989536
Alignment:
Q  359 aagataaaggaccaaaacattacctaaaattaagttaagg 398  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  11989575 aagataaaggaccaaattattacctaaaattaagttaagg 11989536  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 5049279 - 5049324
Alignment:
Q  360 agataaaggaccaaaacattacctaaaattaagttaaggaattatt 405  Q
    ||||||||||||||||  || |||||||||||||||||| ||||||    
T  5049279 agataaaggaccaaaatgtttcctaaaattaagttaagggattatt 5049324  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 2579155 - 2579111
Alignment:
Q  359 aagataaaggaccaaaacattacctaaaattaagttaaggaatta 403  Q
    |||||||||||||||| | |||| |||||||||||||||| ||||    
T  2579155 aagataaaggaccaaatcgttacttaaaattaagttaagggatta 2579111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 31574311 - 31574267
Alignment:
Q  359 aagataaaggaccaaaacattacctaaaattaagttaaggaatta 403  Q
    ||||||||||||||||   ||||||||||||||||||||| ||||    
T  31574311 aagataaaggaccaaactgttacctaaaattaagttaagggatta 31574267  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 399
Target Start/End: Complemental strand, 53735005 - 53734905
Alignment:
Q  299 aaaaggataatattgttaacatttaaaaagataaaggattgaaatgggaagnnnnnnnntaagataaaggaccaaaacattacctaaaattaagttaagg 398  Q
    |||||||||| | ||  |||||||||||| |||||||| | ||||||||||         |||||||||||| ||||||||| || ||||||||||||||    
T  53735005 aaaaggataacaatgccaacatttaaaaacataaaggagtaaaatgggaagaaaaaaaagaagataaaggacgaaaacattatctgaaattaagttaagg 53734906  T
Q  399 a 399  Q
    |    
T  53734905 a 53734905  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 21360517 - 21360478
Alignment:
Q  359 aagataaaggaccaaaacattacctaaaattaagttaagg 398  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  21360517 aagataaaggactaaaacgttacctaaaattaagttaagg 21360478  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 10026200 - 10026161
Alignment:
Q  359 aagataaaggaccaaaacattacctaaaattaagttaagg 398  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  10026200 aagataaaggactaaaacgttacctaaaattaagttaagg 10026161  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 13178477 - 13178516
Alignment:
Q  359 aagataaaggaccaaaacattacctaaaattaagttaagg 398  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  13178477 aagataaaggaccaaaatgttacctaaaattaagttaagg 13178516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 398
Target Start/End: Original strand, 10027124 - 10027160
Alignment:
Q  362 ataaaggaccaaaacattacctaaaattaagttaagg 398  Q
    ||||||||||||||  |||||||||||||||||||||    
T  10027124 ataaaggaccaaaatgttacctaaaattaagttaagg 10027160  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 33617142 - 33617181
Alignment:
Q  359 aagataaaggaccaaaacattacctaaaattaagttaagg 398  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  33617142 aagataaaggactaaaacattacttaaaattaagttaagg 33617181  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 1214635 - 1214685
Alignment:
Q  298 aaaaaggataatattgttaacatttaaaaagataaaggattgaaatgggaa 348  Q
    ||||||||||||| |||||||  |||||||||||||| ||| |||||||||    
T  1214635 aaaaaggataatagtgttaacccttaaaaagataaagcattaaaatgggaa 1214685  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 20985534 - 20985488
Alignment:
Q  298 aaaaaggataatattgttaacatttaaaaagataaaggattgaaatg 344  Q
    ||||||||| | |||||||||||||||||| |||||||||| |||||    
T  20985534 aaaaaggatgacattgttaacatttaaaaacataaaggattaaaatg 20985488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 341566 - 341610
Alignment:
Q  359 aagataaaggaccaaaacattacctaaaattaagttaaggaatta 403  Q
    ||||||||||||||||   ||||||||||||||||||||| ||||    
T  341566 aagataaaggaccaaactgttacctaaaattaagttaagggatta 341610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 1511247 - 1511211
Alignment:
Q  362 ataaaggaccaaaacattacctaaaattaagttaagg 398  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  1511247 ataaaggacgaaaatattacctaaaattaagttaagg 1511211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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