View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0570_high_6 (Length: 394)

Name: NF0570_high_6
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0570_high_6
NF0570_high_6
[»] chr8 (20 HSPs)
chr8 (18-222)||(37629742-37629946)
chr8 (253-394)||(37629992-37630134)
chr8 (258-390)||(16655973-16656106)
chr8 (258-394)||(4234173-4234310)
chr8 (254-390)||(4623811-4623948)
chr8 (263-390)||(3001336-3001466)
chr8 (256-390)||(30204609-30204744)
chr8 (254-390)||(29958475-29958612)
chr8 (263-390)||(21567707-21567835)
chr8 (258-386)||(14842303-14842432)
chr8 (258-374)||(36470112-36470230)
chr8 (269-390)||(39436847-39436969)
chr8 (254-334)||(22798532-22798612)
chr8 (269-390)||(36046490-36046611)
chr8 (270-390)||(41787503-41787624)
chr8 (256-340)||(23403591-23403675)
chr8 (338-390)||(23404191-23404243)
chr8 (141-186)||(37629459-37629504)
chr8 (256-312)||(23275567-23275623)
chr8 (263-298)||(4414226-4414261)
[»] chr2 (23 HSPs)
chr2 (256-390)||(30609647-30609782)
chr2 (262-390)||(6974478-6974607)
chr2 (263-390)||(37802797-37802925)
chr2 (261-390)||(5958964-5959094)
chr2 (260-378)||(24475905-24476024)
chr2 (260-390)||(28107449-28107580)
chr2 (269-390)||(4382213-4382335)
chr2 (261-390)||(21423363-21423493)
chr2 (269-390)||(15070351-15070473)
chr2 (256-373)||(37060057-37060175)
chr2 (258-390)||(27004444-27004579)
chr2 (254-390)||(14786231-14786362)
chr2 (264-390)||(30393551-30393680)
chr2 (291-390)||(7747906-7748006)
chr2 (256-354)||(13274194-13274292)
chr2 (257-325)||(37140161-37140229)
chr2 (272-390)||(27404584-27404695)
chr2 (304-384)||(30757152-30757232)
chr2 (258-377)||(5807294-5807413)
chr2 (264-378)||(10217328-10217443)
chr2 (287-387)||(15431254-15431355)
chr2 (287-390)||(27969511-27969615)
chr2 (338-390)||(25605458-25605509)
[»] chr5 (19 HSPs)
chr5 (254-390)||(3729292-3729431)
chr5 (269-394)||(21020689-21020815)
chr5 (264-390)||(39508277-39508404)
chr5 (269-379)||(21583855-21583966)
chr5 (258-394)||(41929336-41929473)
chr5 (254-390)||(34766844-34766982)
chr5 (258-390)||(8159029-8159164)
chr5 (258-390)||(9913797-9913930)
chr5 (269-390)||(9793596-9793718)
chr5 (259-390)||(20736119-20736251)
chr5 (263-390)||(2068963-2069085)
chr5 (258-390)||(3711177-3711314)
chr5 (258-360)||(9793723-9793826)
chr5 (289-390)||(41910179-41910281)
chr5 (310-390)||(38451000-38451081)
chr5 (258-325)||(25081762-25081829)
chr5 (258-325)||(25139731-25139798)
chr5 (270-390)||(20815677-20815799)
chr5 (257-291)||(38451089-38451123)
[»] chr3 (16 HSPs)
chr3 (257-388)||(36404185-36404317)
chr3 (259-394)||(37115844-37115980)
chr3 (254-384)||(45602975-45603107)
chr3 (264-390)||(39391958-39392085)
chr3 (277-390)||(3618301-3618415)
chr3 (270-390)||(35534489-35534610)
chr3 (260-390)||(46487267-46487397)
chr3 (256-394)||(52742345-52742484)
chr3 (275-390)||(16353448-16353566)
chr3 (258-390)||(29360477-29360610)
chr3 (269-384)||(48944072-48944188)
chr3 (279-390)||(54882953-54883065)
chr3 (288-394)||(47599389-47599497)
chr3 (256-325)||(14201710-14201777)
chr3 (338-390)||(14202112-14202164)
chr3 (280-390)||(48644538-48644648)
[»] scaffold0302 (1 HSPs)
scaffold0302 (256-390)||(18464-18599)
[»] chr1 (16 HSPs)
chr1 (256-390)||(41998840-41998975)
chr1 (258-390)||(6750271-6750404)
chr1 (256-390)||(18808772-18808906)
chr1 (253-390)||(24909469-24909607)
chr1 (262-390)||(3695405-3695534)
chr1 (284-390)||(36290612-36290719)
chr1 (261-390)||(26653899-26654031)
chr1 (254-390)||(794904-795043)
chr1 (269-386)||(571653-571773)
chr1 (260-384)||(39001944-39002070)
chr1 (256-340)||(1585853-1585937)
chr1 (271-360)||(11121865-11121955)
chr1 (258-390)||(44272316-44272452)
chr1 (309-379)||(7409795-7409866)
chr1 (260-325)||(4792595-4792660)
chr1 (264-298)||(9224878-9224912)
[»] chr4 (16 HSPs)
chr4 (269-390)||(21555386-21555508)
chr4 (264-394)||(56100095-56100226)
chr4 (260-390)||(36609374-36609506)
chr4 (274-390)||(827840-827957)
chr4 (257-390)||(23249464-23249598)
chr4 (257-373)||(35929701-35929818)
chr4 (255-390)||(12701030-12701166)
chr4 (258-390)||(19598362-19598495)
chr4 (256-390)||(44243657-44243792)
chr4 (263-390)||(35749385-35749513)
chr4 (264-390)||(41842789-41842917)
chr4 (288-386)||(27733401-27733499)
chr4 (254-316)||(53584602-53584664)
chr4 (312-390)||(53583432-53583511)
chr4 (338-390)||(33862382-33862434)
chr4 (62-109)||(50183046-50183093)
[»] chr7 (8 HSPs)
chr7 (256-390)||(40337027-40337162)
chr7 (258-390)||(8163604-8163737)
chr7 (258-390)||(2362343-2362476)
chr7 (282-390)||(28089153-28089262)
chr7 (259-351)||(41326037-41326130)
chr7 (338-390)||(43403172-43403224)
chr7 (256-390)||(35589366-35589503)
chr7 (338-390)||(31637790-31637842)
[»] scaffold0306 (1 HSPs)
scaffold0306 (261-390)||(13017-13147)
[»] scaffold0152 (1 HSPs)
scaffold0152 (261-390)||(22180-22310)
[»] chr6 (11 HSPs)
chr6 (270-390)||(444528-444649)
chr6 (256-390)||(1067793-1067929)
chr6 (269-390)||(2814850-2814973)
chr6 (258-390)||(6200123-6200256)
chr6 (258-373)||(26393967-26394083)
chr6 (259-375)||(24640328-24640445)
chr6 (263-390)||(23774069-23774197)
chr6 (304-390)||(4032288-4032375)
chr6 (282-390)||(2993551-2993654)
chr6 (254-298)||(12324163-12324207)
chr6 (287-390)||(34710135-34710240)
[»] scaffold0532 (1 HSPs)
scaffold0532 (264-390)||(11320-11447)
[»] scaffold1248 (1 HSPs)
scaffold1248 (269-394)||(974-1100)
[»] scaffold0952 (1 HSPs)
scaffold0952 (269-394)||(1213-1339)
[»] scaffold0121 (1 HSPs)
scaffold0121 (260-390)||(37363-37495)
[»] scaffold0025 (1 HSPs)
scaffold0025 (259-390)||(67868-68001)
[»] scaffold0140 (1 HSPs)
scaffold0140 (260-367)||(21473-21581)
[»] scaffold0293 (1 HSPs)
scaffold0293 (338-386)||(1790-1838)
[»] scaffold0037 (1 HSPs)
scaffold0037 (338-386)||(40972-41020)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 37629742 - 37629946
Alignment:
Q  18 cccccttgcttatatatatgagatcaatgactttaaagacagatgccgagataaaccgttagacttctttattgtgttgcaaagagagatcgaagacgaa 117  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  37629742 cccccttgcttatagatacgagatcaatgactttaaagacagatgccgagataaactgttagacttctttattgcgttgcgaagagagatcgaagacgaa 37629841  T
Q  118 gattctgtaacgcagtatgggcaataaaaagttcattaaaattgtaacatcgtgtaagtctatccaaataagaatgaggaaaacaattatattttcaaca 217  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37629842 gattctctaacgcagtacgggcaataaaaagttcattaagattgtaacatcgtgtaagtctaaccaaataagaatgaggaaaacaattatattttcaaca 37629941  T
Q  218 tttac 222  Q
    |||||    
T  37629942 tttac 37629946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 253 - 394
Target Start/End: Original strand, 37629992 - 37630134
Alignment:
Q  253 catttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcc 351  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| ||  || | ||||||| ||||||||||| |||||| ||||| |||||||||||    
T  37629992 catttagagcctgtttgaaatagtttttgttttcagttttttaaatatataagccctcttctcgcaatagttagccttttacatgttttagttttagtcc 37630091  T
Q  352 tcaaaactaaaaaattcaaaacagtttctaaaactgtaaattt 394  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  37630092 tcaaaactaaaaaattcaaaacagtttccaaaactgtaaattt 37630134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 258 - 390
Target Start/End: Original strand, 16655973 - 16656106
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaa 356  Q
    |||||||||| ||||||||||||||||||||||||| |||| ||| || ||||||||||||||||||| | |||||| || |||||||||||||||||||    
T  16655973 agagcctgtttgaaatagtttttgttttcagtttttaaaatatacaagccttcttctcacaatagttatcattttacatgttttagttttagtcctcaaa 16656072  T
Q  357 actaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||||||| ||||||||||    
T  16656073 actaaaaaattcaaaacagtttccaaaactgtaa 16656106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 258 - 394
Target Start/End: Original strand, 4234173 - 4234310
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaa 356  Q
    ||||||||||  ||||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||||| |||||| || |||||||| |||| |||||    
T  4234173 agagcctgtttaaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcgcaatagttagccttttacatgttttagtttgagtcatcaaa 4234272  T
Q  357 actaaaaaattcaaaacagtttctaaaactgtaaattt 394  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  4234273 actaaaaaattcaaaacagtttccaaaattgtaaattt 4234310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 254 - 390
Target Start/End: Complemental strand, 4623948 - 4623811
Alignment:
Q  254 atttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcct 352  Q
    |||||||| ||||| |||||||||||||||||||||||||||||| ||  |||| ||||||||||||||||| | |||||| || |||||||||||||||    
T  4623948 atttagagactgtttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctcacaatagttatccttttacatgttttagttttagtcct 4623849  T
Q  353 caaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    | ||||||||||||||||||| ||||| ||||||||||    
T  4623848 ccaaactaaaaaattcaaaactgtttccaaaactgtaa 4623811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 263 - 390
Target Start/End: Complemental strand, 3001466 - 3001336
Alignment:
Q  263 ctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttag--ttttagtcctcaaaact 359  Q
    ||||| |||||||||||| ||||||||||||||||| ||| |||| |||||||||||| |||| |||||||| || |||||  |||||||||||||||||    
T  3001466 ctgtttgaaatagtttttattttcagtttttgaaatatacaagtcctcttctcacaatggttatctttttacatgttttagttttttagtcctcaaaact 3001367  T
Q  360 aaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||||||||| ||||||||||    
T  3001366 aaaaaattcaaaacagtttccaaaactgtaa 3001336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 256 - 390
Target Start/End: Complemental strand, 30204744 - 30204609
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctca 354  Q
    ||||||||| || |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| | |||||| || |||||||||||||  ||    
T  30204744 ttagagcctctttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttagttttagtctcca 30204645  T
Q  355 aaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||| |||||||||||||| |||| |||||    
T  30204644 aaactaaaaagttcaaaacagtttccaaaattgtaa 30204609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 390
Target Start/End: Complemental strand, 29958612 - 29958475
Alignment:
Q  254 atttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcct 352  Q
    ||||||||||| ||  ||||| ||||||||||||||||||||||| ||| |||| |||| | |||||||||| | |||||| ||||| ||||||| ||||    
T  29958612 atttagagcctctttaaaataatttttgttttcagtttttgaaatatacaagtcatcttattacaatagttatccttttacatgttttagttttaatcct 29958513  T
Q  353 caaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  29958512 caaaactaaaaaattcaaaacagtttccaaaattgtaa 29958475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 263 - 390
Target Start/End: Original strand, 21567707 - 21567835
Alignment:
Q  263 ctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaa 361  Q
    ||||| |||||||||||||||||||||||| ||||| ||| | || |||||| |||||||||| |||||||| || |||||||||||||| ||||| |||    
T  21567707 ctgtttgaaatagtttttgttttcagttttagaaatatacaaatcctcttcttacaatagttatctttttacatgttttagttttagtccccaaaattaa 21567806  T
Q  362 aaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||| |||| ||||||||||    
T  21567807 aaaattcaaaacaatttccaaaactgtaa 21567835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 258 - 386
Target Start/End: Original strand, 14842303 - 14842432
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttac-ttgtttagttttagtcctcaaa 356  Q
    ||||| |||| |||||| ||||||||||||||||||||||| ||| |||| |||| |||||||||||| | |||||| |  |||||||||| ||| ||||    
T  14842303 agagcatgtttgaaataatttttgttttcagtttttgaaatatacaagtcctcttttcacaatagttatcattttacatattttagttttaatccccaaa 14842402  T
Q  357 actaaaaaattcaaaacagtttctaaaact 386  Q
    ||||||||||||||||||||||| ||||||    
T  14842403 actaaaaaattcaaaacagtttccaaaact 14842432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 258 - 374
Target Start/End: Complemental strand, 36470230 - 36470112
Alignment:
Q  258 agagcctgttcgaaatagtttttgtttt-cagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaa 355  Q
    ||||||| || |||||| |||||||||| ||||||||||||| ||| |||| ||||||||||||||||| | |||||| || |||||||||||||| |||    
T  36470230 agagcctctttgaaataatttttgtttttcagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttagttttagtccccaa 36470131  T
Q  356 aactaaaaaattcaaaaca 374  Q
    |||||||||||||||||||    
T  36470130 aactaaaaaattcaaaaca 36470112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 269 - 390
Target Start/End: Original strand, 39436847 - 39436969
Alignment:
Q  269 gaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaaaaatt 367  Q
    |||||| |||||||||||| |||||||||| ||| |||| |||||||||||||||||  ||||||  || |||||||||||||| ||||| |||||||||    
T  39436847 gaaataatttttgttttcaatttttgaaatatacaagtcctcttctcacaatagttatttttttatatgttttagttttagtccccaaaattaaaaaatt 39436946  T
Q  368 caaaacagtttctaaaactgtaa 390  Q
    |||||||||||  ||||||||||    
T  39436947 caaaacagttttcaaaactgtaa 39436969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 22798532 - 22798612
Alignment:
Q  254 atttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttac 334  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| | ||||||    
T  22798532 atttagagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttac 22798612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 390
Target Start/End: Complemental strand, 36046611 - 36046490
Alignment:
Q  269 gaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaatt 367  Q
    |||||||||||||||| ||||||||||||| ||| | ||| ||| |||||||||||| | |||||| ||||| ||||||| ||| |||||||||||| ||    
T  36046611 gaaatagtttttgttt-cagtttttgaaatatacaaatctccttttcacaatagttatccttttacatgttttagttttaatccccaaaactaaaaagtt 36046513  T
Q  368 caaaacagtttctaaaactgtaa 390  Q
    ||||| |||||| ||||||||||    
T  36046512 caaaatagtttcaaaaactgtaa 36046490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 270 - 390
Target Start/End: Original strand, 41787503 - 41787624
Alignment:
Q  270 aaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattc 368  Q
    |||||||||||||||||||||||| |||| ||  | |  |||||| |||||||||| |||||||| ||||| |||||||||| | |||| ||||||||||    
T  41787503 aaatagtttttgttttcagtttttaaaatatataaattctcttcttacaatagttatctttttacatgttttagttttagtctttaaaattaaaaaattc 41787602  T
Q  369 aaaacagtttctaaaactgtaa 390  Q
     |||||||||| ||||||||||    
T  41787603 gaaacagtttccaaaactgtaa 41787624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 23403591 - 23403675
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt 340  Q
    ||||||||| || |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| | |||||| |||||    
T  23403591 ttagagcctatttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttt 23403675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 23404191 - 23404243
Alignment:
Q  338 tttagttttagtcctcaaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  23404191 tttagttttagtccccaaaactaaaaaattcaaaacagtttccaaaactgtaa 23404243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 37629459 - 37629504
Alignment:
Q  141 ataaaaagttcattaaaattgtaacatcgtgtaagtctatccaaat 186  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  37629459 ataaaaagttaattaaaattgtaacatcgtgtaagtctatccaaat 37629504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 23275623 - 23275567
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttctt 312  Q
    ||||||||| || |||||||||||||||||||||||||||||| ||| |||| ||||    
T  23275623 ttagagcctctttgaaatagtttttgttttcagtttttgaaatatacaagtcctctt 23275567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 298
Target Start/End: Original strand, 4414226 - 4414261
Alignment:
Q  263 ctgttcgaaatagtttttgttttcagtttttgaaat 298  Q
    ||||| ||||||||||||||||||||||||||||||    
T  4414226 ctgtttgaaatagtttttgttttcagtttttgaaat 4414261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 256 - 390
Target Start/End: Complemental strand, 30609782 - 30609647
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctca 354  Q
    |||||||| ||| ||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||| | |||||| ||||| ||||||||||||||    
T  30609782 ttagagcccgtttgaaatcgtttttgttttcagttattgaaatatacaagtcttcttctcacaatagttatcattttacatgttttagttttagtcctca 30609683  T
Q  355 aaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||||||||| ||||||||||    
T  30609682 aaactaaaaaattcaaaacagtttccaaaactgtaa 30609647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 262 - 390
Target Start/End: Complemental strand, 6974607 - 6974478
Alignment:
Q  262 cctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaacta 360  Q
    |||||| |||||||||||||||||||||||||||||| ||  |||  ||||||||||||||||| | |||||| ||||| ||||||||||||||||||||    
T  6974607 cctgtttgaaatagtttttgttttcagtttttgaaatatataagtgctcttctcacaatagttatcattttacatgttttagttttagtcctcaaaacta 6974508  T
Q  361 aaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||| ||||||||||    
T  6974507 aaaaattcaaaacagtttccaaaactgtaa 6974478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 263 - 390
Target Start/End: Complemental strand, 37802925 - 37802797
Alignment:
Q  263 ctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaa 361  Q
    ||||| ||||||||||||||||| | |||||||||| ||| ||||||||||||| |||| ||| |||||||| ||||| ||||||||||| |||||||||    
T  37802925 ctgtttgaaatagtttttgttttaaatttttgaaatatacaagtcttcttctcataatatttatctttttacatgttttagttttagtccccaaaactaa 37802826  T
Q  362 aaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||||||| ||||||||||    
T  37802825 aaaattcaaaacagtttccaaaactgtaa 37802797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 261 - 390
Target Start/End: Original strand, 5958964 - 5959094
Alignment:
Q  261 gcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaact 359  Q
    ||||||| |||||||||||||||||||||||||||||| ||| |||| |||||||  |||||||| | |||||| || |||||||||||||| |||||||    
T  5958964 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgtaatagttatccttttacatgttttagttttagtccccaaaact 5959063  T
Q  360 aaaaaattcaaaacagtttctaaaactgtaa 390  Q
    || ||||||||||||||||| ||||||||||    
T  5959064 aagaaattcaaaacagtttccaaaactgtaa 5959094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 260 - 378
Target Start/End: Complemental strand, 24476024 - 24475905
Alignment:
Q  260 agcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaac 358  Q
    |||||||| |||||||||||||||||||||||||||||| ||| | ||||||| |||||||||||| |||||||| || |||||||||| ||  ||||||    
T  24476024 agcctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcttcttatcacaatagttatctttttacatgttttagttttaatctccaaaac 24475925  T
Q  359 taaaaaattcaaaacagttt 378  Q
    ||||||||||||||||||||    
T  24475924 taaaaaattcaaaacagttt 24475905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 260 - 390
Target Start/End: Complemental strand, 28107580 - 28107449
Alignment:
Q  260 agcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaac 358  Q
    |||||||| |||| | ||||||||||||||||||||||| ||| | || ||||||||||||||||| | |||||| ||||| ||||||| ||| ||||||    
T  28107580 agcctgtttgaaacaatttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttagttttaatccccaaaac 28107481  T
Q  359 taaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||||| ||||||||||    
T  28107480 taaaaaattcaaaacagtttccaaaactgtaa 28107449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 269 - 390
Target Start/End: Original strand, 4382213 - 4382335
Alignment:
Q  269 gaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaaaaatt 367  Q
    |||||||||||||||||||||||||||||| ||| |||  ||||||||||||||||| | |||||| || ||||||||||||||  ||||||||||||||    
T  4382213 gaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttatcattttacatgttttagttttagtccctaaaactaaaaaatt 4382312  T
Q  368 caaaacagtttctaaaactgtaa 390  Q
    |||||||||||| ||| ||||||    
T  4382313 caaaacagtttccaaatctgtaa 4382335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 261 - 390
Target Start/End: Original strand, 21423363 - 21423493
Alignment:
Q  261 gcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaact 359  Q
    ||||||| |||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| | | |||| || |||||||||||||| ||| | |    
T  21423363 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcatctcacaatagttatcctattacatgttttagttttagtccccaacatt 21423462  T
Q  360 aaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||||||||  ||||||||||    
T  21423463 aaaaaattcaaaacagttttcaaaactgtaa 21423493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 269 - 390
Target Start/End: Complemental strand, 15070473 - 15070351
Alignment:
Q  269 gaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaaaaatt 367  Q
    |||||||||||||||||||||||||||||| ||| | || ||||||||||||||||| | |||||  || ||| |||||||||| |||||||||||||||    
T  15070473 gaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttatatgtttttgttttagtccccaaaactaaaaaatt 15070374  T
Q  368 caaaacagtttctaaaactgtaa 390  Q
     ||||||||||| ||||||||||    
T  15070373 taaaacagtttcgaaaactgtaa 15070351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 256 - 373
Target Start/End: Complemental strand, 37060175 - 37060057
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctca 354  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||| | || ||||||||||||||||| | |||||| || |||||||||||| |  |    
T  37060175 ttagagcctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttagttttagttccta 37060076  T
Q  355 aaactaaaaaattcaaaac 373  Q
    |||||||||||||||||||    
T  37060075 aaactaaaaaattcaaaac 37060057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 390
Target Start/End: Original strand, 27004444 - 27004579
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaa 356  Q
    ||||| |||| ||||||||||||||||||| |||||||||| ||  |||| ||||||||||||||||| | |||||  || ||||||||||||||  |||    
T  27004444 agagcatgtttgaaatagtttttgttttcaatttttgaaatatataagtcctcttctcacaatagttatccttttatatgttttagttttagtccctaaa 27004543  T
Q  357 act--aaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||  |||||||||||||||||||| ||||||||||    
T  27004544 actaaaaaaaattcaaaacagtttccaaaactgtaa 27004579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 254 - 390
Target Start/End: Original strand, 14786231 - 14786362
Alignment:
Q  254 atttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcct 352  Q
    |||||| ||||||| ||||||||||||||||||      |||||| ||| |||| ||||||||||||||||| | | |||| ||||| |||||||||||     
T  14786231 atttagggcctgtttgaaatagtttttgttttc------tgaaatatacaagtcctcttctcacaatagttatcctattacatgttttagttttagtccc 14786324  T
Q  353 caaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  14786325 caaaactaaaaaattcaaaacagtttccaaaattgtaa 14786362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 30393680 - 30393551
Alignment:
Q  264 tgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agtttt--agtcctcaaaacta 360  Q
    |||| |||||||||||||||||||||||||||||| ||| |||| |||| | | ||| |||| | |||||| ||||| ||||||  ||||| ||||||||    
T  30393680 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttttgataatggttatccttttacatgttttagttttttagtccccaaaacta 30393581  T
Q  361 aaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||| ||||||||||    
T  30393580 aaaaattcaaaacagtttcaaaaactgtaa 30393551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 390
Target Start/End: Complemental strand, 7748006 - 7747906
Alignment:
Q  291 tttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattcaaaacagtttctaaaactgta 389  Q
    |||||||| ||| |||| |||||| |||| ||||| | |||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  7748006 tttgaaatatacaagtcctcttcttacaagagttatcattttacatgttttagttttagtccccaaaactaaaaaattcaaaacagtttccaaaactgta 7747907  T
Q  390 a 390  Q
    |    
T  7747906 a 7747906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 13274194 - 13274292
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctca 354  Q
    |||||||||||| ||||||||||||||||| | |||||||||| ||| |||| ||||||||||||||||| | |||||| || |||||||||||||||||    
T  13274194 ttagagcctgtttgaaatagtttttgtttttaatttttgaaatatacaagtcctcttctcacaatagttatc-ttttacatgttttagttttagtcctca 13274292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 37140229 - 37140161
Alignment:
Q  257 tagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagtta 325  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||    
T  37140229 tagagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgcaatagtta 37140161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 390
Target Start/End: Complemental strand, 27404695 - 27404584
Alignment:
Q  272 atagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgtttagttttagtcctcaaaactaaaaaattcaaa 371  Q
    |||||||||||||| |||||||||||| ||| |||| ||||||||||||  |||  | |||  | ||||   |||||||| |||||||||||||||||||    
T  27404695 atagtttttgtttttagtttttgaaatatacaagtcctcttctcacaat--ttatatgttt--tagttt---tttagtccccaaaactaaaaaattcaaa 27404603  T
Q  372 acagtttctaaaactgtaa 390  Q
    |||||||||||||||||||    
T  27404602 acagtttctaaaactgtaa 27404584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 30757232 - 30757152
Alignment:
Q  304 agtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattcaaaacagtttctaaaa 384  Q
    |||| ||||||||||||||||| | |||||| ||||| ||||||||||| |||| |||||||||||||||||||||| ||||    
T  30757232 agtcctcttctcacaatagttatccttttacatgttttagttttagtccccaaa-ctaaaaaattcaaaacagtttccaaaa 30757152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 377
Target Start/End: Complemental strand, 5807413 - 5807294
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaa 356  Q
    ||||| |||| |||||||||||||||| ||||||||||||| ||| | |   ||| |||||||||||| | |||||  ||||| ||||||||||  ||||    
T  5807413 agagcatgtttgaaatagtttttgttt-cagtttttgaaatatacaaattcccttttcacaatagttatccttttatatgttttagttttagtctccaaa 5807315  T
Q  357 actaaaaaattcaaaacagtt 377  Q
    |||||||| ||||||||||||    
T  5807314 actaaaaagttcaaaacagtt 5807294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 378
Target Start/End: Complemental strand, 10217443 - 10217328
Alignment:
Q  264 tgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaa 362  Q
    |||| |||||||||||| ||||||||||||||||| ||| |||   ||| | | ||||||||   |||||| || |||||||||||| | ||||||||||    
T  10217443 tgtttgaaatagtttttattttcagtttttgaaatatacaagttccctttttagaatagttattcttttacatgttttagttttagttcccaaaactaaa 10217344  T
Q  363 aaattcaaaacagttt 378  Q
    || |||||||||||||    
T  10217343 aagttcaaaacagttt 10217328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 387
Target Start/End: Original strand, 15431254 - 15431355
Alignment:
Q  287 agtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattcaaaacagtttctaaaac 385  Q
    |||||||||||| |||  ||| ||||| |  |||||||| | |||||| ||||| ||||||| ||| ||||||||||||||||||||||||||  |||||    
T  15431254 agtttttgaaatatacatgtcctcttcccgtaatagttatccttttacatgttttagttttaatccccaaaactaaaaaattcaaaacagttttcaaaac 15431353  T
Q  386 tg 387  Q
    ||    
T  15431354 tg 15431355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 390
Target Start/End: Original strand, 27969511 - 27969615
Alignment:
Q  287 agtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattcaaaacagtttctaaaac 385  Q
    |||||||||||| ||| |||   |||||||||||||||| | |||||  ||||| | |||||||  |||||| ||||||||||||||||||||| ||||     
T  27969511 agtttttgaaatatacaagttcacttctcacaatagttatccttttatatgttttaattttagttttcaaaattaaaaaattcaaaacagtttccaaaat 27969610  T
Q  386 tgtaa 390  Q
    |||||    
T  27969611 tgtaa 27969615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 25605509 - 25605458
Alignment:
Q  338 tttagttttagtcctcaaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  25605509 tttagttttagtcc-caaaactaaaaaatttaaaatagtttcaaaaactgtaa 25605458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 254 - 390
Target Start/End: Complemental strand, 3729431 - 3729292
Alignment:
Q  254 atttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcct 352  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||| | |||||| || |||||||||||||||    
T  3729431 atttagagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaataattatccttttacatgttttagttttagtcct 3729332  T
Q  353 caaaact--aaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||  |||||||||||||||||||| ||||||||||    
T  3729331 caaaactaaaaaaaattcaaaacagtttccaaaactgtaa 3729292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 269 - 394
Target Start/End: Original strand, 21020689 - 21020815
Alignment:
Q  269 gaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaaaaatt 367  Q
    |||||||||||||||||||||||||||||| ||  |||||||||||| ||||||||| | |||||  || ||||||||||||||||||||||||||||||    
T  21020689 gaaatagtttttgttttcagtttttgaaatatataagtcttcttctcgcaatagttatccttttatatgatttagttttagtcctcaaaactaaaaaatt 21020788  T
Q  368 caaaacagtttctaaaactgtaaattt 394  Q
    |||||||||||| ||||||||||||||    
T  21020789 caaaacagtttcaaaaactgtaaattt 21020815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 264 - 390
Target Start/End: Complemental strand, 39508404 - 39508277
Alignment:
Q  264 tgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaa 362  Q
    |||| |||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||   |||||| || |||||||||||||| ||||||||||    
T  39508404 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtctttttctcacaatagttattcttttacatgttttagttttagtccccaaaactaaa 39508305  T
Q  363 aaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||| ||||||||||    
T  39508304 aaattcaaaacagtttccaaaactgtaa 39508277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 269 - 379
Target Start/End: Original strand, 21583855 - 21583966
Alignment:
Q  269 gaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaaaaatt 367  Q
    |||||||||||||||||||||||||||||| ||| |||| |||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  21583855 gaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcataatagttatctttttacatgttttagttttagtcctcaaaactaaaaaatt 21583954  T
Q  368 caaaacagtttc 379  Q
    | ||||||||||    
T  21583955 cgaaacagtttc 21583966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 258 - 394
Target Start/End: Original strand, 41929336 - 41929473
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaa 356  Q
    |||||||||| |||||||||||||||||||||||||||||| | | |||  |||| || ||||||||| | |||||| ||||| ||||||||||||||||    
T  41929336 agagcctgtttgaaatagtttttgttttcagtttttgaaatatgcaagttctcttttcgcaatagttatccttttacatgttttagttttagtcctcaaa 41929435  T
Q  357 actaaaaaattcaaaacagtttctaaaactgtaaattt 394  Q
    ||||||||||||||||||||||| | ||| ||||||||    
T  41929436 actaaaaaattcaaaacagtttccataacagtaaattt 41929473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 254 - 390
Target Start/End: Complemental strand, 34766982 - 34766844
Alignment:
Q  254 atttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcct 352  Q
    |||||||||||||| ||||||||||||||||||| |||||||||| ||| |||| |||||||||||||||||   |||||| || |||||||||||||      
T  34766982 atttagagcctgtttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcacaatagttattcttttacatgttttagttttagtctc 34766883  T
Q  353 caaaactaaaaaattcaaaac-agtttctaaaactgtaa 390  Q
    ||||||||||||||||||||| |||||| |||| |||||    
T  34766882 caaaactaaaaaattcaaaacaagtttcaaaaattgtaa 34766844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 258 - 390
Target Start/End: Complemental strand, 8159164 - 8159029
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaa 356  Q
    |||| ||||| ||||||||||||||||||| |||||||||| ||| |||| ||||||||||||| ||| | |||||| || |||||||||||||||||||    
T  8159164 agagtctgtttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcacaataattatccttttacatgttttagttttagtcctcaaa 8159065  T
Q  357 act--aaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||  ||||||||| |||||||||| ||||||||||    
T  8159064 actaaaaaaaattcgaaacagtttccaaaactgtaa 8159029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 258 - 390
Target Start/End: Original strand, 9913797 - 9913930
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaa 356  Q
    ||||| |||| ||||||||||||||||| |||||||||||| ||| |||  || ||||| |||||||| |||||||| || |||||||||| || |||||    
T  9913797 agagcatgtttgaaatagtttttgtttttagtttttgaaatatacaagttctcatctcataatagttatctttttacatgttttagttttaatcttcaaa 9913896  T
Q  357 actaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||||||| |||| |||||    
T  9913897 actaaaaaattcaaaacagtttccaaaattgtaa 9913930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 269 - 390
Target Start/End: Complemental strand, 9793718 - 9793596
Alignment:
Q  269 gaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaatt 367  Q
    |||||||||||||||||||||||||||||| ||| | ||  ||| | |||||||||| | |||||| ||||| ||||||||||| |||||||||||| ||    
T  9793718 gaaatagtttttgttttcagtttttgaaatatacaaatcccctttttacaatagttatccttttacatgttttagttttagtccccaaaactaaaaagtt 9793619  T
Q  368 caaaacagtttctaaaactgtaa 390  Q
    |||||||||||| ||||||||||    
T  9793618 caaaacagtttccaaaactgtaa 9793596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 259 - 390
Target Start/End: Complemental strand, 20736251 - 20736119
Alignment:
Q  259 gagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaa 357  Q
    |||| |||| ||||||||||||||||||| |||||||||  ||  |||| || | |||||||||||| | |||||| ||||| ||||||||||| |||||    
T  20736251 gagcttgtttgaaatagtttttgttttcaatttttgaaaaatataagtcctcctttcacaatagttatcattttacatgttttagttttagtccccaaaa 20736152  T
Q  358 ctaaaaaattcaaaacagtttctaaaactgtaa 390  Q
     ||||||||||||||||||||| ||||||||||    
T  20736151 ttaaaaaattcaaaacagtttccaaaactgtaa 20736119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 263 - 390
Target Start/End: Original strand, 2068963 - 2069085
Alignment:
Q  263 ctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgtttagttttagtcctcaaaactaaa 362  Q
    ||||| |||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||| ||||||| |  |||||||||||||||||||| ||||    
T  2068963 ctgtttgaaatagtttttgttttcagtttttgaaatata--agtcttcttctcacaatatttatcttttta-tgttttagttttagtcctcaaaattaaa 2069059  T
Q  363 aaattcaaaacagtttctaaaactgtaa 390  Q
    ||  | |||| |||||| ||||||||||    
T  2069060 aa--ttaaaatagtttccaaaactgtaa 2069085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 390
Target Start/End: Original strand, 3711177 - 3711314
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgta----cgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcct 352  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||    | |||  | || |||||||||||| |||||||| ||||| || |||| ||||    
T  3711177 agagcatgtttgaaatagtttttgttttcagtttttgaaatatatatacaagttctattttcacaatagttatctttttacatgttttagatttaatcct 3711276  T
Q  353 caaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    | ||||||||||| ||||||||||||| ||||||||||    
T  3711277 cgaaactaaaaaagtcaaaacagtttccaaaactgtaa 3711314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 360
Target Start/End: Complemental strand, 9793826 - 9793723
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaa 356  Q
    |||||||||| |||||||||||||||||||||||||||||| ||| | ||  ||| | |||||||||| | ||||||||| |||||||||||||| ||||    
T  9793826 agagcctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcccctttttacaatagttatccttttacttgttttagttttagtccccaaa 9793727  T
Q  357 acta 360  Q
    ||||    
T  9793726 acta 9793723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 289 - 390
Target Start/End: Complemental strand, 41910281 - 41910179
Alignment:
Q  289 tttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattcaaaacagtttctaaaactg 387  Q
    ||||| |||| ||| |||| |||| |||||||||||| | |||||| ||||| ||||||||||  ||||||||||||||||||||||||||| |||||||    
T  41910281 tttttaaaatatacaagtcctcttttcacaatagttatcattttacatgttttagttttagtctccaaaactaaaaaattcaaaacagtttccaaaactg 41910182  T
Q  388 taa 390  Q
    |||    
T  41910181 taa 41910179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 38451081 - 38451000
Alignment:
Q  310 cttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||||| | |||||| ||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  38451081 cttctcacaatagttatccttttacatgttttagttttagtccccaaaattaaaaaattcaaaacagtttccaaaactgtaa 38451000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 25081762 - 25081829
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagtta 325  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||| || | |||||||||||||||||    
T  25081762 agagcctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcacaatagtta 25081829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 25139731 - 25139798
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagtta 325  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||| || | |||||||||||||||||    
T  25139731 agagcctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcacaatagtta 25139798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 390
Target Start/End: Original strand, 20815677 - 20815799
Alignment:
Q  270 aaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaact-aaaaaatt 367  Q
    |||||||||||||||||||||||| |||| ||| |||| | ||||||||||||||| | |||||  || ||| |||| | ||| ||||||| ||||||||    
T  20815677 aaatagtttttgttttcagtttttaaaatatacaagtccttttctcacaatagttatcattttatatgtttttgtttcaatccccaaaactaaaaaaatt 20815776  T
Q  368 caaaacagtttctaaaactgtaa 390  Q
     ||||||||||| ||| ||||||    
T  20815777 taaaacagtttccaaatctgtaa 20815799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 38451123 - 38451089
Alignment:
Q  257 tagagcctgttcgaaatagtttttgttttcagttt 291  Q
    ||||||||||| |||||||||||||||||||||||    
T  38451123 tagagcctgtttgaaatagtttttgttttcagttt 38451089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 257 - 388
Target Start/End: Complemental strand, 36404317 - 36404185
Alignment:
Q  257 tagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaa 355  Q
    |||||||| || |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| | |||||| || |||||||||||||| |||    
T  36404317 tagagcctctttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagttttagtccccaa 36404218  T
Q  356 aactaaaaaattcaaaacagtttctaaaactgt 388  Q
    |||||||||||||||||||||||| ||||||||    
T  36404217 aactaaaaaattcaaaacagtttcaaaaactgt 36404185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 259 - 394
Target Start/End: Complemental strand, 37115980 - 37115844
Alignment:
Q  259 gagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaa 357  Q
    ||||||||| |||||||||||||||||||||||||||||| ||  |||| ||||||| ||||||||| | |||||  ||||| |||||||||||||||||    
T  37115980 gagcctgtttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctcgcaatagttatcattttatatgttttagttttagtcctcaaaa 37115881  T
Q  358 ctaaaaaattcaaaacagtttctaaaactgtaaattt 394  Q
     ||||||||||||||||||||| ||||||||||||||    
T  37115880 ttaaaaaattcaaaacagtttccaaaactgtaaattt 37115844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 254 - 384
Target Start/End: Original strand, 45602975 - 45603107
Alignment:
Q  254 atttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcct 352  Q
    |||||||| ||||| |||||||||||||||||||||||||||||| ||| |||| |||| |||||||||||| | |||||| || |||||||||||||||    
T  45602975 atttagagtctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttatcacaatagttatccttttacatgttttagttttagtcct 45603074  T
Q  353 caaaact-aaaaaattcaaaacagtttctaaaa 384  Q
    ||||||| |||||||||||||||||||| ||||    
T  45603075 caaaactaaaaaaattcaaaacagtttccaaaa 45603107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 39391958 - 39392085
Alignment:
Q  264 tgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaa 362  Q
    |||| |||||||||||||||||||||||||||||| ||| ||| ||||| |||||||||||| | |||||| || |||||||||||||| ||||| ||||    
T  39391958 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttttcttttcacaatagttatccttttacatgttttagttttagtccccaaaattaaa 39392057  T
Q  363 aaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||| ||||||||||    
T  39392058 aaattcaaaacagtttcaaaaactgtaa 39392085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 277 - 390
Target Start/End: Complemental strand, 3618415 - 3618301
Alignment:
Q  277 ttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattcaaaacag 375  Q
    ||||||||||||||| |||||| ||| ||| |||||||||||||| ||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  3618415 ttttgttttcagtttctgaaatatacaagttttcttctcacaatatttatctttttacatgttttagttttagtccccaaaactaaaaaattcaaaacag 3618316  T
Q  376 tttctaaaactgtaa 390  Q
    |||| ||||||||||    
T  3618315 tttccaaaactgtaa 3618301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 390
Target Start/End: Original strand, 35534489 - 35534610
Alignment:
Q  270 aaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaaaaattc 368  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | |||||  || |||||||||||| | ||||| ||||||||||    
T  35534489 aaatagtttttgttttcagtttttgaaatatacaagtcttcttctcacaatagttatcattttatatgttttagttttagttcccaaaattaaaaaattc 35534588  T
Q  369 aaaacagtttctaaaactgtaa 390  Q
    ||| ||||||| ||||||||||    
T  35534589 aaagcagtttcaaaaactgtaa 35534610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 260 - 390
Target Start/End: Original strand, 46487267 - 46487397
Alignment:
Q  260 agcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaac 358  Q
    |||||||| |||||||||||| ||||||||||||||||| ||  |||||||||||||||||||||| | |||||  ||||| |||||||||||  ||||     
T  46487267 agcctgtttgaaatagttttt-ttttcagtttttgaaatatataagtcttcttctcacaatagttatcattttatatgttttagttttagtccctaaaat 46487365  T
Q  359 taaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||||||||||||||| |||||    
T  46487366 taaaaaattcaaaacagtttctaaaattgtaa 46487397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 256 - 394
Target Start/End: Original strand, 52742345 - 52742484
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctca 354  Q
    |||||||||||| |||||||||||||||| ||||||||||||| ||| | |  |||| || ||||||||| | |||||| | ||| ||||||| ||||||    
T  52742345 ttagagcctgtttgaaatagtttttgtttccagtttttgaaatatacaaattctcttatcgcaatagttatcattttacatattttagttttaatcctca 52742444  T
Q  355 aaactaaaaaattcaaaacagtttctaaaactgtaaattt 394  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  52742445 aaactaaaaaattcaaagcagtttccaaaactgtaaattt 52742484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 275 - 390
Target Start/End: Complemental strand, 16353566 - 16353448
Alignment:
Q  275 gtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agtttt--agtcctcaaaactaaaaaattcaaa 371  Q
    |||||||||||||||||||||||| ||| |||| |||| |||||||||||| | |||||| ||||| ||||||  ||||| |||||||||||||||||||    
T  16353566 gtttttgttttcagtttttgaaatatacaagtcctcttttcacaatagttatccttttacatgttttagttttttagtccccaaaactaaaaaattcaaa 16353467  T
Q  372 acagtttctaaaactgtaa 390  Q
    |||||||| ||||||||||    
T  16353466 acagtttccaaaactgtaa 16353448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 258 - 390
Target Start/End: Original strand, 29360477 - 29360610
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaa 356  Q
    |||||||||| |||| | ||||| ||||||||||||||||| ||| |||| |||||||||| |||||| | |||||| || |||||||||||||| ||||    
T  29360477 agagcctgtttgaaacaatttttcttttcagtttttgaaatatacaagtcctcttctcacagtagttatccttttacatgttttagttttagtccccaaa 29360576  T
Q  357 actaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    | ||||||||| |||| |||||| ||||||||||    
T  29360577 attaaaaaatttaaaatagtttccaaaactgtaa 29360610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 269 - 384
Target Start/End: Complemental strand, 48944188 - 48944072
Alignment:
Q  269 gaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaaaaatt 367  Q
    |||||||||||| |||| || ||||||||| ||| |||| |||||| |||||||||| | |||||| || ||| |||||||||| ||||| |||||||||    
T  48944188 gaaatagtttttctttttagcttttgaaatatacaagtcctcttcttacaatagttatcattttacatgtttttgttttagtccccaaaattaaaaaatt 48944089  T
Q  368 caaaacagtttctaaaa 384  Q
    |||||||||||| ||||    
T  48944088 caaaacagtttcaaaaa 48944072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 390
Target Start/End: Complemental strand, 54883065 - 54882953
Alignment:
Q  279 ttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattcaaaacagtt 377  Q
    |||||||| ||||||||||| ||  |||| ||||||||||||| ||| | |||||| ||||| |||||||||||  ||||||||||||||||||| ||||    
T  54883065 ttgttttcggtttttgaaatatagaagtcctcttctcacaatatttatccttttacgtgttttagttttagtccctaaaactaaaaaattcaaaatagtt 54882966  T
Q  378 tctaaaactgtaa 390  Q
    || ||||||||||    
T  54882965 tccaaaactgtaa 54882953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 288 - 394
Target Start/End: Original strand, 47599389 - 47599497
Alignment:
Q  288 gtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaa-aattcaaaacagtttctaaaac 385  Q
    |||||| |||| ||| | || ||||||||||||||||| | |||||| ||||| |||||||||| |||||||||||| |||||||||||||||| |||||    
T  47599389 gtttttaaaatatacaaatcctcttctcacaatagttatccttttacatgttttagttttagtcatcaaaactaaaaaaattcaaaacagtttccaaaac 47599488  T
Q  386 tgtaaattt 394  Q
    | |||||||    
T  47599489 tataaattt 47599497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 14201710 - 14201777
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagtta 325  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||  |||| |||| ||||||||||||    
T  14201710 ttagagcctgtttgaaatagtttttgttttcagtttttgaaatata--agtcctcttttcacaatagtta 14201777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 14202112 - 14202164
Alignment:
Q  338 tttagttttagtcctcaaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||  ||||||||||||||| ||||||||||| ||||||||||    
T  14202112 tttagttttagtctccaaaactaaaaaatttaaaacagtttcaaaaactgtaa 14202164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 390
Target Start/End: Original strand, 48644538 - 48644648
Alignment:
Q  280 tgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaaaaattcaaaacagttt 378  Q
    |||||||| |||||||||| ||| | || ||||||||||||| ||| | |||||| || ||||||||||||   |||||| ||||||||| |||||||||    
T  48644538 tgttttcaatttttgaaatatacaaatcatcttctcacaatatttatcattttacatgttttagttttagtttccaaaacaaaaaaattc-aaacagttt 48644636  T
Q  379 ctaaaactgtaa 390  Q
    | |||| |||||    
T  48644637 ccaaaaatgtaa 48644648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 256 - 390
Target Start/End: Complemental strand, 18599 - 18464
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctca 354  Q
    |||||||||||| ||||||||||||| ||| |||||||||||| ||| |||| ||||||||||||||||| | |||||| || |||||||||||||||||    
T  18599 ttagagcctgtttgaaatagtttttggttttagtttttgaaatatacaagtcatcttctcacaatagttatccttttacatgttttagttttagtcctca 18500  T
Q  355 aaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||||||||  ||||||||||    
T  18499 aaactaaaaaattcaaaacagttttcaaaactgtaa 18464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 256 - 390
Target Start/End: Complemental strand, 41998975 - 41998840
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctca 354  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||| |||||||||||||||||| ||| |||||||  || |||||||||||| | ||    
T  41998975 ttagagcctgtttgaaatagtttttgttttcattttttgaaatatacaagtcttcttctcacaatatttatctttttatatgttttagttttagtaccca 41998876  T
Q  355 aaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41998875 aaactaaaaaattcaaaacagtttccaaaactgtaa 41998840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 258 - 390
Target Start/End: Complemental strand, 6750404 - 6750271
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaa 356  Q
    |||||||||| |||||||||||||||||||||||||||||| ||| | ||   || |||||||||||| |||||||| ||||| ||||||||||||||||    
T  6750404 agagcctgtttgaaatagtttttgttttcagtttttgaaatatacaaatccctttttcacaatagttatctttttacatgttttagttttagtcctcaaa 6750305  T
Q  357 actaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||| |||||||||||||| || |||||||    
T  6750304 actaaaaagttcaaaacagtttccaatactgtaa 6750271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 256 - 390
Target Start/End: Original strand, 18808772 - 18808906
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctca 354  Q
    ||||||||| || |||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||| | |||||  || |||||||||||||| ||    
T  18808772 ttagagcctttt-gaaataatttttgttttcagtttatgaaatatacaagtcttcttctcacaatagttatccttttatatgttttagttttagtcccca 18808870  T
Q  355 aaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||||||||  ||||||||||    
T  18808871 aaactaaaaaattcaaaacagtttacaaaactgtaa 18808906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 253 - 390
Target Start/End: Complemental strand, 24909607 - 24909469
Alignment:
Q  253 catttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttac-ttgtttagttttagtcc 351  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||| ||| |||  ||||||||||||||||| | |||||| |  ||| |||||||| |    
T  24909607 catttagagcctgtttgaaatagtttttattttcagtttttaaaatatactagttctcttctcacaatagttatccttttacatattttcgttttagttc 24909508  T
Q  352 tcaaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
     |||||||||||| |||||||||||||||||||||||||    
T  24909507 ccaaaactaaaaatttcaaaacagtttctaaaactgtaa 24909469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 262 - 390
Target Start/End: Original strand, 3695405 - 3695534
Alignment:
Q  262 cctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaacta 360  Q
    |||||| |||||||||||||||||| ||||||||||| ||| ||||  ||| ||| |||||||| | |||||| ||||| ||||||||||| ||||||||    
T  3695405 cctgtttgaaatagtttttgttttcggtttttgaaatatacaagtccccttttcataatagttatcattttacatgttttagttttagtccccaaaacta 3695504  T
Q  361 aaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||  ||||||||||    
T  3695505 aaaaattcaaaacagttttcaaaactgtaa 3695534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 284 - 390
Target Start/End: Original strand, 36290612 - 36290719
Alignment:
Q  284 ttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattcaaaacagtttctaa 382  Q
    ||||||||||||||| ||| |||| |||||| |||||||||| | |||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||    
T  36290612 ttcagtttttgaaatatacaagtcctcttctgacaatagttatcattttacatgttttagttttagtccccaaaactaaaaaattcaaaacagtttcaaa 36290711  T
Q  383 aactgtaa 390  Q
    ||||||||    
T  36290712 aactgtaa 36290719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 261 - 390
Target Start/End: Complemental strand, 26654031 - 26653899
Alignment:
Q  261 gcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt---agttttagtcctcaaaa 357  Q
    ||||||| ||||||||||||||||||| |||||||||| |||  ||| |||||||||||| |||| | |||||| |||||     ||||||| | |||||    
T  26654031 gcctgtttgaaatagtttttgttttcaatttttgaaatatacaggtcctcttctcacaatggttatccttttacatgttttaattttttagttcccaaaa 26653932  T
Q  358 ctaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||||||||||| ||||||||||    
T  26653931 ctaaaaaattcaaaacagtttccaaaactgtaa 26653899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 390
Target Start/End: Original strand, 794904 - 795043
Alignment:
Q  254 atttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttag--ttttagtc 350  Q
    |||||| || |||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||||||| | |||||| || |||||  ||||||||    
T  794904 atttagggcatgtttgaaatattttttgttttcagtttttgaaatatacaggtcttcttctcacaatagttatccttttacatgttttagttttttagtc 795003  T
Q  351 ctcaaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
       ||||||||||||||| |||||||||  ||||||||||    
T  795004 tctaaaactaaaaaattctaaacagttttcaaaactgtaa 795043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 269 - 386
Target Start/End: Original strand, 571653 - 571773
Alignment:
Q  269 gaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttag--ttttagtcctcaaaactaaaaaa 365  Q
    |||||||||||||||||||||||||||||| ||   ||| |||||||| |||||||| | |||||| || |||||  ||||||||| ||||| |||||||    
T  571653 gaaatagtttttgttttcagtttttgaaatatatacgtcctcttctcataatagttatcattttacatgttttagttttttagtccccaaaattaaaaaa 571752  T
Q  366 ttcaaaacagtttctaaaact 386  Q
    ||||||| |||||||||||||    
T  571753 ttcaaaatagtttctaaaact 571773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 384
Target Start/End: Original strand, 39001944 - 39002070
Alignment:
Q  260 agcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaac 358  Q
    |||||||| |||||||||||||||||||||||||||||| ||| |||| |||| |  ||||||||| | |||||| || |||||||||||||| ||||      
T  39001944 agcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctctttttgcaatagttatccttttacatgttttagttttagtccccaaagt 39002043  T
Q  359 t-aaaaaattcaaaacagtttctaaaa 384  Q
    | ||||||||||||||| |||| ||||    
T  39002044 taaaaaaattcaaaacattttccaaaa 39002070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 1585853 - 1585937
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt 340  Q
    |||||||||||| |||||||||| |||||| |||||||||||| ||| ||||||||||| |||||||||| | |||||| |||||    
T  1585853 ttagagcctgtttgaaatagtttatgtttttagtttttgaaatatacaagtcttcttcttacaatagttatccttttacatgttt 1585937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 360
Target Start/End: Original strand, 11121865 - 11121955
Alignment:
Q  271 aatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaacta 360  Q
    |||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||| | |||||| || ||||||||||||||  |||||||    
T  11121865 aatagtttttgttttcagtttttgaaatatacaagtcatcttcgcacaatagttatcattttacatgttttagttttagtccctaaaacta 11121955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 390
Target Start/End: Complemental strand, 44272452 - 44272316
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagt-ttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttag--ttttagtcctc 353  Q
    ||||| |||| ||||||||||||||||||||| ||||||||| ||| |||  |||| ||| ||| ||||   |||||| || |||||  ||||||||| |    
T  44272452 agagcttgtttgaaatagtttttgttttcagttttttgaaatatacaagttctcttttcataatggttattattttacatgttttagttttttagtcccc 44272353  T
Q  354 aaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  44272352 aaaactaaaaaattctaaacagtttcaaaaactgtaa 44272316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 309 - 379
Target Start/End: Complemental strand, 7409866 - 7409795
Alignment:
Q  309 tcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattcaaaacagtttc 379  Q
    |||||||| |||||||| | |||||| ||||| ||||||||||| |||||||||||||||||||||||||||    
T  7409866 tcttctcataatagttatccttttacatgttttagttttagtccccaaaactaaaaaattcaaaacagtttc 7409795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 325
Target Start/End: Complemental strand, 4792660 - 4792595
Alignment:
Q  260 agcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagtta 325  Q
    ||||||||  |||||||||||||||| |||||||||||| ||| |||  |||||||||||||||||    
T  4792660 agcctgtttaaaatagtttttgtttttagtttttgaaatatacaagttctcttctcacaatagtta 4792595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 9224912 - 9224878
Alignment:
Q  264 tgttcgaaatagtttttgttttcagtttttgaaat 298  Q
    |||| ||||||||||||||||||||||||||||||    
T  9224912 tgtttgaaatagtttttgttttcagtttttgaaat 9224878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 269 - 390
Target Start/End: Original strand, 21555386 - 21555508
Alignment:
Q  269 gaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaaaaatt 367  Q
    |||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| | |||||| || |||||||||||||| |||||||||||||||    
T  21555386 gaaatagtttttgttttcagtttttgaaatatataagtcttcttctcacaatagttatccttttacatgttttagttttagtccccaaaactaaaaaatt 21555485  T
Q  368 caaaacagtttctaaaactgtaa 390  Q
    |||||||||||| ||||||||||    
T  21555486 caaaacagtttccaaaactgtaa 21555508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 264 - 394
Target Start/End: Complemental strand, 56100226 - 56100095
Alignment:
Q  264 tgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaa 362  Q
    |||| |||||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||| | |||||| ||||| ||||| | ||||||||||||||    
T  56100226 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcgcaatagttatccttttacatgttttagtttaaatcctcaaaactaaa 56100127  T
Q  363 aaattcaaaacagtttctaaaactgtaaattt 394  Q
    ||||||||||||||||| ||||||||||||||    
T  56100126 aaattcaaaacagtttccaaaactgtaaattt 56100095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 260 - 390
Target Start/End: Complemental strand, 36609506 - 36609374
Alignment:
Q  260 agcctgttcgaaatagtttttgtttt-cagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaa 357  Q
    |||||||| ||||||||||||||||| ||||||||||||| ||| | || ||||||||||||||||| | |||||| ||||| ||||||||||| |||||    
T  36609506 agcctgtttgaaatagtttttgtttttcagtttttgaaatatacaaatcctcttctcacaatagttatccttttacatgttttagttttagtccccaaaa 36609407  T
Q  358 ctaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||||||||||| ||||||||||    
T  36609406 ctaaaaaattcaaaacagtttcaaaaactgtaa 36609374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 274 - 390
Target Start/End: Original strand, 827840 - 827957
Alignment:
Q  274 agtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaaaaattcaaaa 372  Q
    ||||||||||||| ||||||||||| ||| |||| ||||||||||||||||| |||||||| || |||||||||||||  ||||||||||||||||||||    
T  827840 agtttttgttttcggtttttgaaatatacaagtcctcttctcacaatagttatctttttacatgttttagttttagtctccaaaactaaaaaattcaaaa 827939  T
Q  373 cagtttctaaaactgtaa 390  Q
    ||||||| ||||||||||    
T  827940 cagtttccaaaactgtaa 827957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 257 - 390
Target Start/End: Original strand, 23249464 - 23249598
Alignment:
Q  257 tagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaa 355  Q
    ||||||||||| |||| | ||||||||||| ||||||||||| ||| || | ||||||||||||||||| | |||||| ||||| ||||||||||| |||    
T  23249464 tagagcctgtttgaaacaatttttgttttcggtttttgaaatatacaagccctcttctcacaatagttatccttttacatgttttagttttagtccccaa 23249563  T
Q  356 aactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||| ||||||||||||||||| ||||||||||    
T  23249564 aactaagaaattcaaaacagtttccaaaactgtaa 23249598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 257 - 373
Target Start/End: Original strand, 35929701 - 35929818
Alignment:
Q  257 tagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaa 355  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||  |||| ||||||||||||||||| | |||||  || |||||||||||||| |||    
T  35929701 tagagcctgtttgaaatagtttttgttttcagtttttgaaatatataagtcctcttctcacaatagttatcattttatatgttttagttttagtccccaa 35929800  T
Q  356 aactaaaaaattcaaaac 373  Q
    ||||||||||||||||||    
T  35929801 aactaaaaaattcaaaac 35929818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 255 - 390
Target Start/End: Original strand, 12701030 - 12701166
Alignment:
Q  255 tttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctc 353  Q
    ||||||| | ||| |||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||   |||||| || ||||||||||||||||    
T  12701030 tttagagtcggtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttcttacaatagttattcttttacatgttttagttttagtcctc 12701129  T
Q  354 aaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||  |||||||||||||  |||||| ||||||||||    
T  12701130 aaacttaaaaaattcaaattagtttccaaaactgtaa 12701166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 258 - 390
Target Start/End: Original strand, 19598362 - 19598495
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaa 356  Q
    |||| ||||| |||||||||||||||||||||||| ||||| ||| |||| | |||||| |||||||  |||||||| || |||||||||||||| ||||    
T  19598362 agagtctgtttgaaatagtttttgttttcagttttcgaaatatacaagtcattttctcaaaatagttttctttttacatgttttagttttagtccccaaa 19598461  T
Q  357 actaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||| ||||||||||  ||||||||||    
T  19598462 actaaaaaatttaaaacagttttcaaaactgtaa 19598495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 256 - 390
Target Start/End: Complemental strand, 44243792 - 44243657
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctca 354  Q
    |||||||||||| ||||||  ||||||||| |||||||||||| ||| |||| |||||| |||||||||| | |||||  || |||| ||||||||| ||    
T  44243792 ttagagcctgtttgaaataaattttgtttttagtttttgaaatatacaagtcatcttcttacaatagttatccttttatatgttttaattttagtccaca 44243693  T
Q  355 aaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||||||||| |||| |||||    
T  44243692 aaactaaaaaattcaaaacagtttccaaaattgtaa 44243657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 263 - 390
Target Start/End: Original strand, 35749385 - 35749513
Alignment:
Q  263 ctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaa 361  Q
    ||||| |||||| ||||| |||||| |||||||||| ||| |||| |||||||| |||| ||| |||||||  ||||| |||||||||| ||||||||||    
T  35749385 ctgtttgaaataatttttattttcaatttttgaaatatacaagtcatcttctcataataattatctttttatatgttttagttttagtcgtcaaaactaa 35749484  T
Q  362 aaaattcaaaacagtttctaaaactgtaa 390  Q
    ||| |||||||||||||| ||||||||||    
T  35749485 aaacttcaaaacagtttccaaaactgtaa 35749513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 41842789 - 41842917
Alignment:
Q  264 tgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agtttt--agtcctcaaaacta 360  Q
    |||| |||||||||||||||||| ||||||||||| ||| | || | |||||||||| |||| ||||| || ||||| ||||||  ||||  ||||||||    
T  41842789 tgtttgaaatagtttttgttttcggtttttgaaatatacaaatccttttctcacaattgttatctttt-acatgttttagttttttagtctccaaaacta 41842887  T
Q  361 aaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||| ||||||||||    
T  41842888 aaaaattcaaaacagtttccaaaactgtaa 41842917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 288 - 386
Target Start/End: Original strand, 27733401 - 27733499
Alignment:
Q  288 gtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaactaaaaaattcaaaacagtttctaaaact 386  Q
    ||||||||||| ||| || | ||||||||||||||||| | |||||| || |||||||||||||||| ||| ||||||||||||||||||||| ||||||    
T  27733401 gtttttgaaatatacaagacctcttctcacaatagttatccttttacatgttttagttttagtcctc-aaattaaaaaattcaaaacagtttccaaaact 27733499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 53584664 - 53584602
Alignment:
Q  254 atttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctca 316  Q
    ||||||||| |||| |||||||||||||||||||||||||||||| ||| |||| ||||||||    
T  53584664 atttagagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctca 53584602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 53583511 - 53583432
Alignment:
Q  312 tctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||| | | |||||| ||||| ||||||||||| |||||||||| |||||||||| ||||| ||||||||||    
T  53583511 tctcacaatagtaatccttttacatgttttagttttagtccccaaaactaaataattcaaaactgtttccaaaactgtaa 53583432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 33862382 - 33862434
Alignment:
Q  338 tttagttttagtcctcaaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||| |||||| ||||||||||||||||||||||||||| ||| ||||||    
T  33862382 tttagttctagtccccaaaactaaaaaattcaaaacagtttccaaatctgtaa 33862434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 50183046 - 50183093
Alignment:
Q  62 gccgagataaaccgttagacttctttattgtgttgcaaagagagatcg 109  Q
    |||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  50183046 gccgagataaactgttagacttctttattgcgttgcgaagagagatcg 50183093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 256 - 390
Target Start/End: Complemental strand, 40337162 - 40337027
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctca 354  Q
    |||||| ||||| |||||||||||||||||||||||| ||||| | | |||| ||||||||||||||||| | |||||| ||||| ||||||||||| ||    
T  40337162 ttagagtctgtttgaaatagtttttgttttcagttttcgaaatatgcaagtcatcttctcacaatagttatcattttacatgttttagttttagtcccca 40337063  T
Q  355 aaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||||||||| ||||||||||    
T  40337062 aaactaaaaaattcaaaacagtttccaaaactgtaa 40337027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 258 - 390
Target Start/End: Complemental strand, 8163737 - 8163604
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaa 356  Q
    |||| ||||| |||||||||||||||||| ||||||||||| ||| |||  ||||||||||||||||| |||||||| || |||||||||||||  ||||    
T  8163737 agagtctgtttgaaatagtttttgttttctgtttttgaaatatacaagttctcttctcacaatagttatctttttacatgttttagttttagtctccaaa 8163638  T
Q  357 actaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    | ||||||||| ||||||||||| |||| |||||    
T  8163637 attaaaaaatttaaaacagtttcaaaaattgtaa 8163604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 390
Target Start/End: Complemental strand, 2362476 - 2362343
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttactt-gtttagttttagtcctcaaa 356  Q
    |||| ||||| |||| | |||||||||||||||||| |||| ||| | |||||||||||||||||||| | ||||||||  |||||||||||||   |||    
T  2362476 agagtctgtttgaaacaatttttgttttcagtttttaaaatatacaaatcttcttctcacaatagttatcattttacttattttagttttagtctcaaaa 2362377  T
Q  357 actaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||||| |||||  ||||||||||    
T  2362376 actaaaaaattcaaaatagttttcaaaactgtaa 2362343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 282 - 390
Target Start/End: Original strand, 28089153 - 28089262
Alignment:
Q  282 ttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattcaaaacagtttct 380  Q
    ||||||||||||||||| ||| | || |||||| |||||||||| | |||||| ||||| ||||||||||| |||||||||||||||||||||| |||      
T  28089153 ttttcagtttttgaaatatacaaatcatcttcttacaatagttatcattttacatgttttagttttagtccccaaaactaaaaaattcaaaacaattttc 28089252  T
Q  381 aaaactgtaa 390  Q
    ||||||||||    
T  28089253 aaaactgtaa 28089262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 41326037 - 41326130
Alignment:
Q  259 gagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcc 351  Q
    |||| |||| ||||||||||||||||| |||||||||||| ||  | |||||||||||||||||||| | |||||| || ||||||||||||||    
T  41326037 gagcatgtttgaaatagtttttgttttgagtttttgaaatatataaatcttcttctcacaatagttatccttttacatgttttagttttagtcc 41326130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 43403224 - 43403172
Alignment:
Q  338 tttagttttagtcctcaaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  43403224 tttagttttagtccccaaaactaaaaaattcaaaacagtttccaaaactgtaa 43403172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 390
Target Start/End: Complemental strand, 35589503 - 35589366
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagcttttta-cttgtttag--ttttagtcct 352  Q
    |||| ||| ||| ||||||||||||||||||  |||||||||| ||| |||| |||| ||| |||||||| | |||||  |  |||||  ||||||||      
T  35589503 ttagggccggtttgaaatagtttttgttttcgatttttgaaatatacaagtcctcttttcataatagttatccttttatatattttagttttttagtctc 35589404  T
Q  353 caaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||| ||||||||| ||||| ||||||||||    
T  35589403 caaaactaaaatattcaaaactgtttccaaaactgtaa 35589366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 31637790 - 31637842
Alignment:
Q  338 tttagttttagtcctcaaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||| | |||| ||||||||| ||||||||||| ||||||||||    
T  31637790 tttagttttagtctttaaaattaaaaaatttaaaacagtttccaaaactgtaa 31637842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 261 - 390
Target Start/End: Complemental strand, 13147 - 13017
Alignment:
Q  261 gcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaact 359  Q
    ||||||| |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| | |||||| || |||||||||||||| ||||||     
T  13147 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagttttagtccccaaaaca 13048  T
Q  360 aaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||||||||  ||||||||||    
T  13047 aaaaaattcaaaacagttttgaaaactgtaa 13017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 261 - 390
Target Start/End: Original strand, 22180 - 22310
Alignment:
Q  261 gcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaact 359  Q
    ||||||| |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| | |||||| || |||||||||||||| ||||||     
T  22180 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatccttttacatgttttagttttagtccccaaaaca 22279  T
Q  360 aaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||||||||  ||||||||||    
T  22280 aaaaaattcaaaacagttttgaaaactgtaa 22310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 270 - 390
Target Start/End: Original strand, 444528 - 444649
Alignment:
Q  270 aaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattc 368  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| | | |||| ||||| ||||||||||| ||||||||||||||||    
T  444528 aaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatcctattacatgttttagttttagtccccaaaactaaaaaattc 444627  T
Q  369 aaaacagtttctaaaactgtaa 390  Q
    ||||||||||| ||||||||||    
T  444628 aaaacagtttccaaaactgtaa 444649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 256 - 390
Target Start/End: Original strand, 1067793 - 1067929
Alignment:
Q  256 ttagagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagtta-gctttttacttg-tttagttttagtcctc 353  Q
    ||||||| |||| |||||||||||||||||||||||||||||| ||| |||  |||||||||||||||||  |||||||  || |||||||||||||| |    
T  1067793 ttagagcttgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcacaatagttaccctttttatatgttttagttttagtcccc 1067892  T
Q  354 aaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||||||||||||||| ||||||||||    
T  1067893 aaaactaaaaaattcaaaacagtttccaaaactgtaa 1067929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 269 - 390
Target Start/End: Complemental strand, 2814973 - 2814850
Alignment:
Q  269 gaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaact-aaaaaat 366  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| | |||||| || |||||||||||||| ||||||| |||||||    
T  2814973 gaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcacaatagttatcattttacatgttttagttttagtccccaaaactaaaaaaat 2814874  T
Q  367 tcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||| ||||||||||    
T  2814873 tcaaaacagtttccaaaactgtaa 2814850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 258 - 390
Target Start/End: Complemental strand, 6200256 - 6200123
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttac-ttgtttagttttagtcctcaaa 356  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||| | |  ||||||||||||||||| | |||||| |  |||||||||||||  ||||    
T  6200256 agagcctgtttgaaatattttttgttttcagtttttgaaatatacaaattctcttctcacaatagttatccttttacatattttagttttagtctccaaa 6200157  T
Q  357 actaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||||||| |||| ||| ||||||    
T  6200156 actaaaaaattcaaaacaatttccaaacctgtaa 6200123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 373
Target Start/End: Complemental strand, 26394083 - 26393967
Alignment:
Q  258 agagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaa 356  Q
    ||||||| || |||||||||||||||||||||||||||||| ||  | |||||||||| ||||| ||| | |||||| || |||||||||||||||||||    
T  26394083 agagcctctttgaaatagtttttgttttcagtttttgaaatataaaaatcttcttctcgcaatatttatcattttacatgttttagttttagtcctcaaa 26393984  T
Q  357 actaaaaaattcaaaac 373  Q
    ||||||||||| |||||    
T  26393983 actaaaaaatttaaaac 26393967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 259 - 375
Target Start/End: Complemental strand, 24640445 - 24640328
Alignment:
Q  259 gagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaa 357  Q
    |||||| || |||||||||||||||||||||||||||||| | | |||| |||||||| |||||||| | || ||  || |||||||||||||| |||||    
T  24640445 gagcctctttgaaatagtttttgttttcagtttttgaaatatgcaagtcctcttctcataatagttatccttctatatgttttagttttagtccccaaaa 24640346  T
Q  358 ctaaaaaattcaaaacag 375  Q
    || |||||||||||||||    
T  24640345 cttaaaaattcaaaacag 24640328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 263 - 390
Target Start/End: Original strand, 23774069 - 23774197
Alignment:
Q  263 ctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaa 361  Q
    ||||| |||||||||||| |||| | |||||||||| ||| |||  |||||||| |||||||| | |||||  ||||| ||||||| ||| ||||| |||    
T  23774069 ctgtttgaaatagtttttatttttaatttttgaaatatacaagttctcttctcataatagttatccttttatatgttttagttttaatccccaaaattaa 23774168  T
Q  362 aaaattcaaaacagtttctaaaactgtaa 390  Q
    |||||||||||||||||| ||||||||||    
T  23774169 aaaattcaaaacagtttccaaaactgtaa 23774197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 4032375 - 4032288
Alignment:
Q  304 agtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaattcaaaacagtttctaaaactgtaa 390  Q
    |||| ||||||||||||||||| |||||||  ||||| ||||||||||| ||||| ||||||||| |||| |||||  ||||||||||    
T  4032375 agtcatcttctcacaatagttatctttttatatgttttagttttagtccccaaaattaaaaaatttaaaatagttttcaaaactgtaa 4032288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 390
Target Start/End: Complemental strand, 2993654 - 2993551
Alignment:
Q  282 ttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgtttagttttagtcctcaaaactaaaaaattcaaaacagtttcta 381  Q
    |||| |||||||||||| ||| |||  ||||||||||||||||| | |||||  | |||     |||| | ||||||||||||||||||||||||||| |    
T  2993654 tttttagtttttgaaatatacaagttctcttctcacaatagttatccttttatatcttt-----tagtacccaaaactaaaaaattcaaaacagtttcaa 2993560  T
Q  382 aaactgtaa 390  Q
    |||||||||    
T  2993559 aaactgtaa 2993551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 12324163 - 12324207
Alignment:
Q  254 atttagagcctgttcgaaatagtttttgttttcagtttttgaaat 298  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  12324163 atttagagcctgtttgaagtagtttttgttttcagtttttgaaat 12324207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 390
Target Start/End: Original strand, 34710135 - 34710240
Alignment:
Q  287 agtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaact-aaaaaattcaaaacagtttctaaaa 384  Q
    |||||||||||| ||| |||  |||||||||| ||||||   |||||  ||||| ||||||||||  ||||||| ||||||||||||| |||||| ||||    
T  34710135 agtttttgaaatatacaagttctcttctcacagtagttattcttttatatgttttagttttagtctccaaaactaaaaaaattcaaaatagtttccaaaa 34710234  T
Q  385 ctgtaa 390  Q
     |||||    
T  34710235 ttgtaa 34710240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 11320 - 11447
Alignment:
Q  264 tgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttta-gttttagtcctcaaaactaaa 362  Q
    |||| |||||||||||||||||||||||||||||| ||| |||| |||||||| | |||||| | ||| || |||||  |||||||||| ||||||||||    
T  11320 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcagagtagttatcctttaacatgtttttgttttagtccccaaaactaaa 11419  T
Q  363 aaattcaaaacagtttctaaaactgtaa 390  Q
    ||||||||||||||||||||||||||||    
T  11420 aaattcaaaacagtttctaaaactgtaa 11447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 269 - 394
Target Start/End: Original strand, 974 - 1100
Alignment:
Q  269 gaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaatt 367  Q
    ||||||||||||||||||||||||| |||| ||| |||||| |||||  ||||||||   |||||  ||||| |||||||||||||||||||||||||||    
T  974 gaaatagtttttgttttcagtttttaaaatatacaagtctttttctcgtaatagttattcttttatatgttttagttttagtcctcaaaactaaaaaatt 1073  T
Q  368 caaaacagtttctaaaactgtaaattt 394  Q
    |||||||||||| ||||||||||||||    
T  1074 caaaacagtttccaaaactgtaaattt 1100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 269 - 394
Target Start/End: Complemental strand, 1339 - 1213
Alignment:
Q  269 gaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttgttt-agttttagtcctcaaaactaaaaaatt 367  Q
    ||||||||||||||||||||||||| |||| ||| |||||| |||||  ||||||||   |||||  ||||| |||||||||||||||||||||||||||    
T  1339 gaaatagtttttgttttcagtttttaaaatatacaagtctttttctcgtaatagttattcttttatatgttttagttttagtcctcaaaactaaaaaatt 1240  T
Q  368 caaaacagtttctaaaactgtaaattt 394  Q
    |||||||||||| ||||||||||||||    
T  1239 caaaacagtttccaaaactgtaaattt 1213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 260 - 390
Target Start/End: Complemental strand, 37495 - 37363
Alignment:
Q  260 agcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttac-ttgtttagttttagtcctcaaaac 358  Q
    ||||| || |||||||| ||||||||| ||||||||||| ||| |||| ||||||| ||||||||| | |||||| |  |||||||||||||| ||||||    
T  37495 agcctatttgaaatagtgtttgttttcggtttttgaaatatacaagtcctcttctcgcaatagttatcattttacatattttagttttagtccccaaaac 37396  T
Q  359 t-aaaaaattcaaaacagtttctaaaactgtaa 390  Q
    | |||||||||||||||||||| ||||||||||    
T  37395 taaaaaaattcaaaacagtttccaaaactgtaa 37363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 390
Target Start/End: Original strand, 67868 - 68001
Alignment:
Q  259 gagcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaa 357  Q
    ||||||||| |||||| |||||||||||||||||| |||| ||| |||| |||||| |||||||||| | |||||| || ||||||||||||   |||||    
T  67868 gagcctgtttgaaataatttttgttttcagtttttaaaatatacaagtcctcttctaacaatagttatccttttacatgttttagttttagtttccaaaa 67967  T
Q  358 ct-aaaaaattcaaaacagtttctaaaactgtaa 390  Q
    || |||||||||||||||||||  ||||||||||    
T  67968 ctaaaaaaattcaaaacagttttcaaaactgtaa 68001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 260 - 367
Target Start/End: Original strand, 21473 - 21581
Alignment:
Q  260 agcctgttcgaaatagtttttgttttcagtttttgaaatgtacgagtcttcttctcacaatagttagctttttacttg-tttagttttagtcctcaaaac 358  Q
    |||||||| |||| ||||||||||||||||||||||||| ||  | || |||||||||||||||||   |||||| || |||||||||||||| ||||||    
T  21473 agcctgtttgaaacagtttttgttttcagtttttgaaatatataaatcatcttctcacaatagttattattttacatgttttagttttagtccccaaaac 21572  T
Q  359 taaaaaatt 367  Q
     ||||||||    
T  21573 caaaaaatt 21581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 1790 - 1838
Alignment:
Q  338 tttagttttagtcctcaaaactaaaaaattcaaaacagtttctaaaact 386  Q
    |||||||||||||| ||||||| ||||||||||||| ||||| ||||||    
T  1790 tttagttttagtccccaaaactgaaaaattcaaaactgtttcaaaaact 1838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 40972 - 41020
Alignment:
Q  338 tttagttttagtcctcaaaactaaaaaattcaaaacagtttctaaaact 386  Q
    |||||||||||||| ||||||| ||||||||||||| ||||| ||||||    
T  40972 tttagttttagtccccaaaactgaaaaattcaaaactgtttcaaaaact 41020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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