View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0570_low_10 (Length: 394)
Name: NF0570_low_10
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0570_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 27 - 245
Target Start/End: Complemental strand, 33431364 - 33431147
Alignment:
| Q |
27 |
cagaaacattgaaaattatggcacgtgccactaattaagtgtgctttgttcttgcagtggtcatcacagctaccttccgtgaagcatggtcctctgtatg |
126 |
Q |
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| T |
33431364 |
cagaaacattgaaagttatggcacgtgccactaattaagtgtgctttgttcttgcagtggtcatcacagctaccttccgtgaagcatggtcctctgtatg |
33431265 |
T |
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| Q |
127 |
tatcagccaaatgctcacaagtccttgcttcagtcaccgcaatttcttctgcatccaagtactaccaatatttattaaaacattatatgtagatattaat |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || |
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| T |
33431264 |
tatcagccaaatgctcacaagtccttgcttcagtcaccgcaatttcttctgcatccaagtaccaccaatatttattagaacattatatgtagatatt-at |
33431166 |
T |
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| Q |
227 |
ttgctaatcaaaaccttta |
245 |
Q |
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||||||||||||||||||| |
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| T |
33431165 |
ttgctaatcaaaaccttta |
33431147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 245 - 381
Target Start/End: Complemental strand, 33430850 - 33430714
Alignment:
| Q |
245 |
agtaaggaacaataaactaaagtaataataatagtttatccttgttattttaataattagaagggtaaaaaatttaaaatagagacataagaaataaatt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33430850 |
agtaaggaacaataaactaaagtaataataatagtttatccttgttattttattaattagaagggtaaaaaatttaaaatagagacataagaaataaatt |
33430751 |
T |
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| Q |
345 |
gatatataattttgatgtctttagggtttaggccttc |
381 |
Q |
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| T |
33430750 |
gatatattattttgatgtctttagggtttaggccttc |
33430714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 33435509 - 33435437
Alignment:
| Q |
108 |
aagcatggtcctctgtatgtatcagccaaatgctcacaagtccttgcttcagtcaccgcaatttcttctgcat |
180 |
Q |
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||||||||||| |||||| |||||||||||| |||||||||| | |||||||||||| ||||||||||||||| |
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| T |
33435509 |
aagcatggtcccctgtatttatcagccaaattctcacaagtcttagcttcagtcaccacaatttcttctgcat |
33435437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 33424729 - 33424657
Alignment:
| Q |
111 |
catggtcctctgtatgtatcagccaaatgctcacaagtccttgcttcagtcaccgcaatttcttctgcatcca |
183 |
Q |
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|||||||| ||| ||||| ||||||||| ||||||||| |||| ||||||||| |||||||||||||||||| |
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| T |
33424729 |
catggtcccctgaatgtaccagccaaattctcacaagtgtttgcctcagtcaccacaatttcttctgcatcca |
33424657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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