View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0570_low_11 (Length: 389)
Name: NF0570_low_11
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0570_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 85 - 360
Target Start/End: Complemental strand, 33427669 - 33427394
Alignment:
| Q |
85 |
tcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaagcccatttgatcaaaatttaggtgtgaaacatat |
184 |
Q |
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| T |
33427669 |
tcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaagcccatttgatcaaaatttaggtttgaaatatat |
33427570 |
T |
|
| Q |
185 |
ttctctcctaagtatggaaattaaatgtaaaatatgtgtccgggaaaatgttcctagaatgaatctcaatgaaaagaattgctagctagcaaatgcttcg |
284 |
Q |
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| T |
33427569 |
ttctctcctaagtatggaaattaaatgtaaaatatgtgtcggggaaaatgttcctagaatgaatctcaatgaaaagaattgctagctagcaaatgcttcg |
33427470 |
T |
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| Q |
285 |
aaaatgttattgttttgatttgatgaattttgctattcgactagggtatatatatggcaatttttatggtacttta |
360 |
Q |
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| T |
33427469 |
aaaatgttattgttttgatttgatgaattttgttattcgactagggtatatatatggcaatttttatggtacttta |
33427394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 68 - 190
Target Start/End: Original strand, 33410832 - 33410956
Alignment:
| Q |
68 |
catctccaacaatatgatcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaa |
165 |
Q |
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| T |
33410832 |
catcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatggaaatagaaaggatcaaaactacacgagaagaagccatttgatcaaa |
33410931 |
T |
|
| Q |
166 |
atttaggtgtgaaacatatttctct |
190 |
Q |
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| T |
33410932 |
atttgagtttggaaaatatttctct |
33410956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 33424747 - 33424850
Alignment:
| Q |
68 |
catctccaacaatatgatcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaa |
165 |
Q |
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|||| |||||||| |||||||| || ||||||||||| |||| ||||||||| ||||| | |||||||| | |||||||||| ||||||||||||| |
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| T |
33424747 |
catcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacgagaagaagccatttgatcaaa |
33424846 |
T |
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| Q |
166 |
attt |
169 |
Q |
| |
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|||| |
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| T |
33424847 |
attt |
33424850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 33416676 - 33416804
Alignment:
| Q |
68 |
catctccaacaatatgatcagt---agccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatc |
162 |
Q |
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|||| |||||||||| |||||| ||| ||||||||||| |||| ||||||||| ||||| | |||||||| | |||||||||| |||||||||| |
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| T |
33416676 |
catcaccaacaatataatcagttgcagcaattgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacgagaagaagccatttgatc |
33416775 |
T |
|
| Q |
163 |
aaaatttaggtgtgaaacatatttctctc |
191 |
Q |
| |
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||||||| || || || ||||||||||| |
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| T |
33416776 |
aaaatttgagtttggaaaatatttctctc |
33416804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 33416867 - 33416942
Alignment:
| Q |
246 |
aatctcaatgaaaagaattgctagctagcaaatgcttcgaaaatgttattgttttga-tttgatgaattttgctattc |
322 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||| || |||| | ||||||||| ||||||||||| ||| |||| |
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| T |
33416867 |
aatctcaatcaaaagaatagctagctagcaaatgctgcgcaaatat--ttgttttgattttgatgaattgtgcaattc |
33416942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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