View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0570_low_13 (Length: 371)
Name: NF0570_low_13
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0570_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 30503716 - 30503823
Alignment:
| Q |
79 |
cagagagagataactcactaagatgaccaacaaacataagtgaaataagactgataccaaaatttaagagtgtaactgatatcaatggtcctgatagcca |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30503716 |
cagagagagataactcactaagatgaccaacaaacataagtgaaataagactgataccaaaatttaagagtgtaactgatatcaatggtcctgataacca |
30503815 |
T |
|
| Q |
179 |
taattgtg |
186 |
Q |
| |
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|||||||| |
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| T |
30503816 |
taattgtg |
30503823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 30489007 - 30489114
Alignment:
| Q |
79 |
cagagagagataactcactaagatgaccaacaaacataagtgaaataagactgataccaaaatttaagagtgtaactgatatcaatggtcctgatagcca |
178 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
30489007 |
cagagagagataactcaccaagatgaccaacaaacataagtgaaataatattgataccataatttaagagtgtaactgatatcaatggtcctgataacca |
30489106 |
T |
|
| Q |
179 |
taattgtg |
186 |
Q |
| |
|
|||||||| |
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|
| T |
30489107 |
taattgtg |
30489114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 30514390 - 30514492
Alignment:
| Q |
79 |
cagagagagataactcactaagatgaccaacaaacataagtgaaataagactgataccaaaatttaagagtgtaactgatatcaatggtcctgatagcca |
178 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
30514390 |
cagagagaggtaactcaccaagatgaccaacaaacataactgaaataagattgataccaaaatttaaaagtgtaactgatatcaatggccctgatagcca |
30514489 |
T |
|
| Q |
179 |
taa |
181 |
Q |
| |
|
||| |
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|
| T |
30514490 |
taa |
30514492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 24706453 - 24706351
Alignment:
| Q |
79 |
cagagagagataactcactaagatgaccaacaaacataagtgaaataagactgataccaaaatttaagagtgtaactgatatcaatggtcctgatagcca |
178 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| | || ||||||||||||||| ||||||||||| |
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|
| T |
24706453 |
cagagagaggtaactcaccaagatgaccaacaaacataactgaaataagattgataccaaaatttaaaaatgcaactgatatcaatggccctgatagcca |
24706354 |
T |
|
| Q |
179 |
taa |
181 |
Q |
| |
|
||| |
|
|
| T |
24706353 |
taa |
24706351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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