View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0570_low_14 (Length: 349)
Name: NF0570_low_14
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0570_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 6 - 339
Target Start/End: Original strand, 29931962 - 29932295
Alignment:
| Q |
6 |
acttcaagtgtaaaagcatccctcccaccattggcgggacggctgcaattgtttccagcatcattgcatggcatccgtaccgttcctgcagcagttatat |
105 |
Q |
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| T |
29931962 |
acttcaagtgtaaaagcatccctcccaccattggcgggacggctgcaattgtttccagcatcattgcatggcatccgtaccgttcctgcagcagttatat |
29932061 |
T |
|
| Q |
106 |
ttcagattaatcaaacccatcaatcaaaattcttctatgtatcaagttacacttcactacaacacattgaattactagggaattaaattttcttttgttg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29932062 |
ttcagattaatcaaacccatcaatcaaaattcttctatgtatcaagttacacttcactacaacacatcgaattactagggaattaaattttcttttgttg |
29932161 |
T |
|
| Q |
206 |
tctcaacacactcgttcctagtgggaataggctatggtaatttagcgtccagtccaaaagtaagtaaattctagtaaaaagttgttctagtcagaatcga |
305 |
Q |
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| T |
29932162 |
tctcaacactctcgttcctagcgggaataggctatggtaatttagtgttcggtccaaaagtaagtaaattctagtaaaaagttgttctagtcagaatcga |
29932261 |
T |
|
| Q |
306 |
aacaagtgaatcaataaattaccactaagaataa |
339 |
Q |
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| T |
29932262 |
aacaagtgaatcaataagttaccactaagaataa |
29932295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 29934691 - 29934799
Alignment:
| Q |
11 |
aagtgtaaaagcatccctcccaccattggcgggacggctgcaattgtttccagcatcattgcatggcatccgtaccgttcctgcagcagttatatttcag |
110 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||| || || |||||||||| | ||||| |||| |
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| T |
29934691 |
aagtgtaaaagcatccctcccaccattccagggaccgctgctattgtttctagcatcattgcatggcaaccatatcgttcctgcaataattataattcaa |
29934790 |
T |
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| Q |
111 |
attaatcaa |
119 |
Q |
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||||||||| |
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| T |
29934791 |
attaatcaa |
29934799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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