View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0570_low_16 (Length: 337)
Name: NF0570_low_16
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0570_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 36993672 - 36993905
Alignment:
| Q |
10 |
aataatattactattccaaataaatttccaattccggtgattgatgagttgtggggagcggtaaaattttcaaaattggatttgaaatcagggtgtcacc |
109 |
Q |
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| T |
36993672 |
aataatattactattccaaataaatttccaattccggtgattgatgagttgtggggagcggtaaaattttcaaaattggatttgaaatcagggtgtcacc |
36993771 |
T |
|
| Q |
110 |
agattcgaacgaaggagggtgatattcaaaaaactgaaatttgaattcatgaaggccattatgaatatctcaaaatgctctttgggttgccaaatgcacc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36993772 |
agattcgaacgaaggagggtgatattcaaaaaactgaaatttgaactcatgaaggccattatgaatatctcaaaatgccctttgggttgccaaatgcacc |
36993871 |
T |
|
| Q |
210 |
gtccacgtttcaagcattaatgaatgatattttt |
243 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
36993872 |
gtccacgtttcaagcattaatgaatgatattttt |
36993905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 37003983 - 37004137
Alignment:
| Q |
26 |
caaataaatttccaattccggtgattgatgagttgtggggagcggtaaaattttcaaaattggatttgaaatcagggtgtcaccagattcgaacgaagga |
125 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||| ||||||| |||||| || |
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| T |
37003983 |
caaataaatttccaattctggtgattgatgagttgtggggagcggtaaaatttttaagattggatttgaaattagggtatcatcagattcaaacgaaaga |
37004082 |
T |
|
| Q |
126 |
gggtgatattcaaaaaactgaaatttgaattcatgaaggccattatgaatatctc |
180 |
Q |
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| T |
37004083 |
gggtgatattcacaagactgaattttgaactcatgaaggacattctgaatatctc |
37004137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 37004140 - 37004181
Alignment:
| Q |
202 |
aatgcaccgtccacgtttcaagcattaatgaatgatattttt |
243 |
Q |
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| T |
37004140 |
aatgcaccgcccacgtttcaagctttgatgaatgatattttt |
37004181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 13687149 - 13687045
Alignment:
| Q |
139 |
aaaactgaaatttgaattcatgaaggccattatgaatatctcaaaatgctctttgggttgccaaatgcaccgtccacgtttcaagcattaatgaatgata |
238 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||| |||||||||||||||| |||||||||| |
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| T |
13687149 |
aaaactgaattttgaactcatgaaggccattatgaatatctcgtaatgccctttgggttaacaaatgccccgaccacgtttcaagcattgatgaatgata |
13687050 |
T |
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| Q |
239 |
ttttt |
243 |
Q |
| |
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||||| |
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|
| T |
13687049 |
ttttt |
13687045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 13689101 - 13688997
Alignment:
| Q |
139 |
aaaactgaaatttgaattcatgaaggccattatgaatatctcaaaatgctctttgggttgccaaatgcaccgtccacgtttcaagcattaatgaatgata |
238 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||| |||||||||||||||| |||||||||| |
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| T |
13689101 |
aaaactgaattttgaactcatgaaggccattatgaatatctcgtaatgccctttgggttaacaaatgccccgaccacgtttcaagcattgatgaatgata |
13689002 |
T |
|
| Q |
239 |
ttttt |
243 |
Q |
| |
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||||| |
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|
| T |
13689001 |
ttttt |
13688997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 26647904 - 26648009
Alignment:
| Q |
92 |
tgaaatcagggtgtcaccagattcgaacgaaggagggtgatattcaaaaaactgaaatttgaattcatgaaggccattatgaatatctcaaaatgctctt |
191 |
Q |
| |
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|||||||||||| ||| |||||||||| ||| |||||||||||||| || |||||| |||||| ||||||||||||||||||||||||| ||||| ||| |
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| T |
26647904 |
tgaaatcagggtatcatcagattcgaatgaaagagggtgatattcacaagactgaattttgaactcatgaaggccattatgaatatctcgtaatgccctt |
26648003 |
T |
|
| Q |
192 |
tgggtt |
197 |
Q |
| |
|
|||||| |
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|
| T |
26648004 |
tgggtt |
26648009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 22188655 - 22188742
Alignment:
| Q |
156 |
tcatgaaggccattatgaatatctcaaaatgctctttgggttgccaaatgcaccgtccacgtttcaagcattaatgaatgatattttt |
243 |
Q |
| |
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||||||||||| ||||||||||||| ||||| ||||| ||| ||||| ||||||| ||||||||||||| ||||||||||||||| |
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| T |
22188655 |
tcatgaaggccgttatgaatatctcgtaatgccctttgtgttaacaaatacaccgtctgcgtttcaagcattgatgaatgatattttt |
22188742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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