View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0570_low_18 (Length: 326)
Name: NF0570_low_18
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0570_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 30503711 - 30503823
Alignment:
| Q |
29 |
agcagcagagagagataactcactaagatgaccaacaaacataagtgaaataagactgataccaaaatttaagagtgtaactgatatcaatggtcctgat |
128 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503711 |
agcaccagagagagataactcactaagatgaccaacaaacataagtgaaataagactgataccaaaatttaagagtgtaactgatatcaatggtcctgat |
30503810 |
T |
|
| Q |
129 |
agccataattgtg |
141 |
Q |
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| T |
30503811 |
aaccataattgtg |
30503823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 30489002 - 30489114
Alignment:
| Q |
29 |
agcagcagagagagataactcactaagatgaccaacaaacataagtgaaataagactgataccaaaatttaagagtgtaactgatatcaatggtcctgat |
128 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30489002 |
agcaccagagagagataactcaccaagatgaccaacaaacataagtgaaataatattgataccataatttaagagtgtaactgatatcaatggtcctgat |
30489101 |
T |
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| Q |
129 |
agccataattgtg |
141 |
Q |
| |
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| ||||||||||| |
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| T |
30489102 |
aaccataattgtg |
30489114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 30514385 - 30514492
Alignment:
| Q |
29 |
agcagcagagagagataactcactaagatgaccaacaaacataagtgaaataagactgataccaaaatttaagagtgtaactgatatcaatggtcctgat |
128 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
30514385 |
agcaccagagagaggtaactcaccaagatgaccaacaaacataactgaaataagattgataccaaaatttaaaagtgtaactgatatcaatggccctgat |
30514484 |
T |
|
| Q |
129 |
agccataa |
136 |
Q |
| |
|
|||||||| |
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|
| T |
30514485 |
agccataa |
30514492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 24706458 - 24706351
Alignment:
| Q |
29 |
agcagcagagagagataactcactaagatgaccaacaaacataagtgaaataagactgataccaaaatttaagagtgtaactgatatcaatggtcctgat |
128 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| | || ||||||||||||||| |||||| |
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| T |
24706458 |
agcaccagagagaggtaactcaccaagatgaccaacaaacataactgaaataagattgataccaaaatttaaaaatgcaactgatatcaatggccctgat |
24706359 |
T |
|
| Q |
129 |
agccataa |
136 |
Q |
| |
|
|||||||| |
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|
| T |
24706358 |
agccataa |
24706351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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