View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0570_low_2 (Length: 618)

Name: NF0570_low_2
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0570_low_2
NF0570_low_2
[»] chr5 (4 HSPs)
chr5 (297-591)||(8619638-8619933)
chr5 (80-257)||(8619418-8619598)
chr5 (113-164)||(8618685-8618736)
chr5 (20-62)||(8619037-8619079)
[»] chr7 (2 HSPs)
chr7 (117-164)||(46972567-46972614)
chr7 (117-153)||(47444060-47444096)
[»] chr2 (3 HSPs)
chr2 (117-164)||(2916275-2916322)
chr2 (117-164)||(45003104-45003151)
chr2 (127-164)||(2915479-2915516)
[»] scaffold0385 (1 HSPs)
scaffold0385 (117-164)||(12972-13019)
[»] scaffold0025 (1 HSPs)
scaffold0025 (117-164)||(4651-4698)
[»] chr4 (6 HSPs)
chr4 (117-164)||(5340175-5340222)
chr4 (117-164)||(40087244-40087291)
chr4 (117-164)||(45226368-45226415)
chr4 (117-155)||(19842778-19842816)
chr4 (549-591)||(38915367-38915409)
chr4 (113-153)||(44098766-44098806)
[»] chr3 (1 HSPs)
chr3 (117-164)||(16222479-16222526)
[»] chr1 (4 HSPs)
chr1 (117-164)||(3772396-3772443)
chr1 (117-164)||(9362852-9362899)
chr1 (117-164)||(45215503-45215550)
chr1 (117-149)||(51031974-51032006)
[»] chr8 (1 HSPs)
chr8 (120-164)||(39116626-39116670)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 297 - 591
Target Start/End: Original strand, 8619638 - 8619933
Alignment:
Q  297 caattatgtgtcttgacctttgtgagtctttcattttgcttagtgacattgtgaatgaaacaaatgtttttcattgattaaaactggtttgattggtacg 396  Q
    |||||||||||||||||||||||| |||| ||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8619638 caattatgtgtcttgacctttgtgcgtctctcattta-cttggtgacattgtgaatgaaacaaatgtttttcattgattaaaactggtttgattggtacg 8619736  T
Q  397 gtggtcactcttcattttctttcatttcatgatttttgtaattnnnnnnnn--tgacgtttataaaatctgtggttcttcaatgccctgatatatttttg 494  Q
    ||||||||||||||||||||||||||| |||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  8619737 gtggtcactcttcattttctttcatttgatgatttttgtaattaaaaaaaaaatgacgtttataaaatctgtggttcttcaatgccctgatatatttttg 8619836  T
Q  495 taaagatattgataaaatacctacgtttgtagtgaagcacacaattatcttctttgttttacaatttcaaatattgtattttctctgattaagactg 591  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8619837 taaagatattgatgaaatacctacgtttgtagtgaagcacacaattatcttctttgttttacagtttcaaatattgtattttctctgattaagactg 8619933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 80 - 257
Target Start/End: Original strand, 8619418 - 8619598
Alignment:
Q  80 aagtgcaaggatcaatgtcaaacnnnnnnngcccagagaccaataccaaaattgggtgaaagtgcagggactaaacgcatatttat---tatgaaaaaat 176  Q
    |||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||||||||||| |||||    |||||||||||    
T  8619418 aagtgcaaggatcaatgtcaaacaaaaaaagcccagggaccaataccaaaattgggtgaaagtgcagggactaaacgcacatttaaacctatgaaaaaat 8619517  T
Q  177 gtttctatgaatgtttgttactaagttcatggatggtgatgatgtgtttgttaattgtattattggcattcttagtcacag 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8619518 gtttctatgaatgtttgttactaagttcatggatggtgatgatgtgtttgttaattgtattattggcattcttagtcacag 8619598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 8618736 - 8618685
Alignment:
Q  113 cagagaccaataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    |||||||||||| ||||||||| |||||||||||||||||||| || |||||    
T  8618736 cagagaccaatatcaaaattggatgaaagtgcagggactaaacacacattta 8618685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 8619037 - 8619079
Alignment:
Q  20 ttatacatttctaatcaaaattcgacatcctaatttgagcgct 62  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
T  8619037 ttatacatttctaatcaaaatcccacatcctaatttgagcgct 8619079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 46972567 - 46972614
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||    
T  46972567 gaccaataccaaaattgggtgaaagtgcagggactaaacacacattta 46972614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 47444060 - 47444096
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaa 153  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47444060 gaccaatgccaaaattgggtgaaagtgcagggactaa 47444096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 2916275 - 2916322
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    |||||| |||||||||||||||||||||||||||||||| || |||||    
T  2916275 gaccaaaaccaaaattgggtgaaagtgcagggactaaacacacattta 2916322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 45003104 - 45003151
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    ||||||| |||||||| | |||||||||| ||||||||||||||||||    
T  45003104 gaccaatgccaaaatttgatgaaagtgcaaggactaaacgcatattta 45003151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 2915516 - 2915479
Alignment:
Q  127 aaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    ||||||||||||||||||||||||||||| || |||||    
T  2915516 aaaattgggtgaaagtgcagggactaaacacacattta 2915479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 13019 - 12972
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    ||||||| |||||||| | ||||||||||||||||||| |||||||||    
T  13019 gaccaatgccaaaatttgatgaaagtgcagggactaaaggcatattta 12972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 4651 - 4698
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    |||||||||||||| |||| ||||||||||||||||||| || |||||    
T  4651 gaccaataccaaaactgggcgaaagtgcagggactaaacacacattta 4698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 5340175 - 5340222
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    ||||||| |||||||| || ||||||||||||||||||| ||||||||    
T  5340175 gaccaatgccaaaattaggcgaaagtgcagggactaaacacatattta 5340222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 40087244 - 40087291
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    ||||||| ||||||||| ||||||||||||||||||||| || |||||    
T  40087244 gaccaatgccaaaattgagtgaaagtgcagggactaaacacacattta 40087291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 45226368 - 45226415
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    ||||||| |||||||| | ||||||||||||||||||| |||||||||    
T  45226368 gaccaatgccaaaatttgatgaaagtgcagggactaaaggcatattta 45226415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 19842778 - 19842816
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaaac 155  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  19842778 gaccaatgccaaaattgggtgaaagtgcagggaccaaac 19842816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 591
Target Start/End: Original strand, 38915367 - 38915409
Alignment:
Q  549 tgttttacaatttcaaatattgtattttctctgattaagactg 591  Q
    |||||||||||||||||||| || ||||||||||||| |||||    
T  38915367 tgttttacaatttcaaatatagttttttctctgattatgactg 38915409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 44098766 - 44098806
Alignment:
Q  113 cagagaccaataccaaaattgggtgaaagtgcagggactaa 153  Q
    ||||||||||| |||||||  ||||||||||||||||||||    
T  44098766 cagagaccaatgccaaaatatggtgaaagtgcagggactaa 44098806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 16222526 - 16222479
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    ||||||| |||||||| | ||||||||||||||||||| |||||||||    
T  16222526 gaccaatgccaaaatttgatgaaagtgcagggactaaaggcatattta 16222479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 3772443 - 3772396
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    |||||||||||||| |||| ||||||||||||||||||| || |||||    
T  3772443 gaccaataccaaaactgggcgaaagtgcagggactaaacacacattta 3772396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 9362852 - 9362899
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    |||||||||||||| |||| ||||||||||||||||||| || |||||    
T  9362852 gaccaataccaaaactgggcgaaagtgcagggactaaacacacattta 9362899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 45215550 - 45215503
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    |||||||||||||| |||| ||||||||||||||||||| || |||||    
T  45215550 gaccaataccaaaactgggcgaaagtgcagggactaaacacacattta 45215503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 51032006 - 51031974
Alignment:
Q  117 gaccaataccaaaattgggtgaaagtgcaggga 149  Q
    ||||||| |||||||||||||||||||||||||    
T  51032006 gaccaatgccaaaattgggtgaaagtgcaggga 51031974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 39116670 - 39116626
Alignment:
Q  120 caataccaaaattgggtgaaagtgcagggactaaacgcatattta 164  Q
    |||| ||||||||||| ||||||||||||||||||| || |||||    
T  39116670 caatgccaaaattgggcgaaagtgcagggactaaacacacattta 39116626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2772 times since January 2019
Visitors: 3829