View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0570_low_21 (Length: 300)
Name: NF0570_low_21
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0570_low_21 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 33428062 - 33428351
Alignment:
| Q |
1 |
ttttatcttctttatttttagttttcagctatgacccttcaagacacaatgttttcaaagtgaacggcacattctttcagagatgcacttttccaccaca |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33428062 |
ttttatcttctttatttttagttttcaactatgacccttcaagacacaatgttttcaaagtgaacggcacattctttcagagatgcacttttccaccaca |
33428161 |
T |
|
| Q |
101 |
aaacgaagcactttctaccggaaaggatattattcccctaaagactgaaggaacaaagtggtatgtttgtggcatagctgatcactgttcggctcgtcaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
33428162 |
aaacgaagcactttctaccggaaaggatattattcccctaaagactgaagaaacaaagtggtatgtttgtggcatagctgataactgttctgctcgtcac |
33428261 |
T |
|
| Q |
201 |
atgaagttcatcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtg |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33428262 |
atgaagttcatcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtg |
33428351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 33416460 - 33416188
Alignment:
| Q |
15 |
tttttagttttcagctatgacccttcaagacacaatgttttcaaagtgaacggcacattctttcagagatgcacttttccaccacaaaacgaagcacttt |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| |||||||| |||||| |||| ||||| ||||||||||||||| ||||||||||||||| |
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| T |
33416460 |
tttttagttttcaactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcacttt |
33416361 |
T |
|
| Q |
115 |
ctaccggaaaggatattattcccctaaagactgaaggaacaaagtggtatgtttgtggcatagctgatcactgttcggctcgtcaaatgaagttcatcat |
214 |
Q |
| |
|
|||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| |
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| T |
33416360 |
ctaccggaaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagttggtcat |
33416261 |
T |
|
| Q |
215 |
cactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatct |
287 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
33416260 |
cactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatct |
33416188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 33410617 - 33410339
Alignment:
| Q |
9 |
tctttatttttagttttcagctatgacccttcaagacacaatgttttcaaagtgaacggcacattctttcagagatgcacttttccaccacaaaacgaag |
108 |
Q |
| |
|
||||| ||||||||||||| |||||| || |||| ||||||||||||||||| || |||||| ||||||| || ||||||||||||||| |||| |||| |
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| T |
33410617 |
tctttctttttagttttcaactatgatccggcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaag |
33410518 |
T |
|
| Q |
109 |
cactttctaccggaaaggatattattcccctaaagactgaaggaacaaagtggtatgtttgtggcatagctgatcactgttcggctcgtcaaatgaagtt |
208 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||| || ||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
33410517 |
cactttctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagtt |
33410418 |
T |
|
| Q |
209 |
catcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatct |
287 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
33410417 |
ggtcatcactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatct |
33410339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 33424513 - 33424241
Alignment:
| Q |
15 |
tttttagttttcagctatgacccttcaagacacaatgttttcaaagtgaacggcacattctttcagagatgcacttttccaccacaaaacgaagcacttt |
114 |
Q |
| |
|
||||||||||||| |||||| || |||| ||||||||||||||||| || |||||| ||||||| || ||||||||||||||| |||| |||||||||| |
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| T |
33424513 |
tttttagttttcaactatgatccggcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcacttt |
33424414 |
T |
|
| Q |
115 |
ctaccggaaaggatattattcccctaaagactgaaggaacaaagtggtatgtttgtggcatagctgatcactgttcggctcgtcaaatgaagttcatcat |
214 |
Q |
| |
|
|||| ||||||||||| |||| ||||| || ||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| |
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| T |
33424413 |
ctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagttggtcat |
33424314 |
T |
|
| Q |
215 |
cactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatct |
287 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
33424313 |
cactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatct |
33424241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 84 - 287
Target Start/End: Complemental strand, 33436596 - 33436393
Alignment:
| Q |
84 |
tgcacttttccaccacaaaacgaagcactttctaccggaaaggatattattcccctaaagactgaaggaacaaagtggtatgtttgtggcatagctgatc |
183 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||| ||||||||||| |||| ||||| || ||||||| ||||||||||||||||||| ||||||||| |
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| T |
33436596 |
tgcacttttccaccaaaaaatgaagcactctctacgggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggcgtagctgatc |
33436497 |
T |
|
| Q |
184 |
actgttcggctcgtcaaatgaagttcatcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttc |
283 |
Q |
| |
|
| ||||| |||| ||||||||| || |||||||||||||||||||| | || ||||||||||| | ||| || |||||| ||||||| ||| |||| || |
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|
| T |
33436496 |
attgttctgctcatcaaatgaaatttgtcatcactgttctagcagaaggcgcacctgctccttcccctcctccatcttctaatgctcactctattgtatc |
33436397 |
T |
|
| Q |
284 |
atct |
287 |
Q |
| |
|
|||| |
|
|
| T |
33436396 |
atct |
33436393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 84 - 287
Target Start/End: Original strand, 5181 - 5384
Alignment:
| Q |
84 |
tgcacttttccaccacaaaacgaagcactttctaccggaaaggatattattcccctaaagactgaaggaacaaagtggtatgtttgtggcatagctgatc |
183 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||||||||||| |||| ||||| |||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
5181 |
tgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatc |
5280 |
T |
|
| Q |
184 |
actgttcggctcgtcaaatgaagttcatcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttc |
283 |
Q |
| |
|
| ||||| |||| |||||| ||||| |||||||||||||||||||| | || |||||||||| ||| || |||||| ||||||| ||| |||| || |
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|
| T |
5281 |
attgttctgctcatcaaataaagtttgtcatcactgttctagcagaaggcgcatctgctccttccactcctccatcttctaatgctcactctattgtatc |
5380 |
T |
|
| Q |
284 |
atct |
287 |
Q |
| |
|
|||| |
|
|
| T |
5381 |
atct |
5384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 24985050 - 24985177
Alignment:
| Q |
45 |
cacaatgttttcaaagtgaacggcacattctttcagagatgcacttttccaccacaaaacgaagcactttctaccggaaaggatattattcccctaaaga |
144 |
Q |
| |
|
|||||||| ||||||||| | || | | ||||||| || |||||||||||| || |||| ||||||||||| ||||||||||| |||||| || || | |
|
|
| T |
24985050 |
cacaatgtcttcaaagtggatggtaaactctttcaaagctgcacttttccatcagaaaatgaagcactttccaccggaaaggacgttattcaactgaaaa |
24985149 |
T |
|
| Q |
145 |
ctgaaggaacaaagtggtatgtttgtgg |
172 |
Q |
| |
|
| ||||||| |||||||||||| ||||| |
|
|
| T |
24985150 |
ccgaaggaagaaagtggtatgtatgtgg |
24985177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 24990880 - 24991007
Alignment:
| Q |
45 |
cacaatgttttcaaagtgaacggcacattctttcagagatgcacttttccaccacaaaacgaagcactttctaccggaaaggatattattcccctaaaga |
144 |
Q |
| |
|
|||||||| ||||||||| | || | | ||||||| || |||||||||||| || |||| ||||||||||| ||||||||||| |||||| || || | |
|
|
| T |
24990880 |
cacaatgtcttcaaagtggatggtaaactctttcaaagctgcacttttccatcagaaaatgaagcactttccaccggaaaggacgttattcaactgaaaa |
24990979 |
T |
|
| Q |
145 |
ctgaaggaacaaagtggtatgtttgtgg |
172 |
Q |
| |
|
| ||||||| |||||||||||| ||||| |
|
|
| T |
24990980 |
ccgaaggaagaaagtggtatgtatgtgg |
24991007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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