View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0570_low_25 (Length: 245)

Name: NF0570_low_25
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0570_low_25
NF0570_low_25
[»] chr4 (11 HSPs)
chr4 (26-245)||(24306896-24307115)
chr4 (175-245)||(23868554-23868624)
chr4 (176-245)||(26433847-26433916)
chr4 (179-245)||(26435630-26435696)
chr4 (179-245)||(26832561-26832627)
chr4 (129-245)||(23401848-23401966)
chr4 (176-245)||(23408926-23408995)
chr4 (175-244)||(23453759-23453828)
chr4 (129-245)||(23885601-23885719)
chr4 (129-244)||(23416093-23416210)
chr4 (209-245)||(34662427-34662463)
[»] chr2 (1 HSPs)
chr2 (175-235)||(14715337-14715397)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 24306896 - 24307115
Alignment:
Q  26 caaacctcattagccaatagaaacacaagaccgtcttatatataaatctcaccgcaacaaccagaattcattcacatccacctttaactcttcctacttt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  24306896 caaacctcattagccaatagaaacacaagaccgtcttatatataaatctcaccgcaacaatcagaattcattcacatacacctttaactcttcctacttt 24306995  T
Q  126 ctcattttcgattcccaaattcgaaaccctaactttcttcaattttcctattcaatggcgcctaagggagagaagaagccagcagagaagaaacccgcag 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24306996 ctcattttcgattcccaaattcgaaaccctaactttcttcaattttccgattcaatggcgccaaagggagagaagaagccagcagagaagaaacccgcag 24307095  T
Q  226 aggagaagaagtccaccgtc 245  Q
    ||||||||||||||||||||    
T  24307096 aggagaagaagtccaccgtc 24307115  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 23868554 - 23868624
Alignment:
Q  175 attcaatggcgcctaagggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtc 245  Q
    |||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23868554 attcaatggcaccaaagggagagaagaagccagcggagaagaaacccgcagaggagaagaagtccaccgtc 23868624  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 26433847 - 26433916
Alignment:
Q  176 ttcaatggcgcctaagggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtc 245  Q
    |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26433847 ttcaatggcgccaaaaggagagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtc 26433916  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 26435630 - 26435696
Alignment:
Q  179 aatggcgcctaagggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtc 245  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26435630 aatggcgccaaaaggagagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtc 26435696  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 26832561 - 26832627
Alignment:
Q  179 aatggcgcctaagggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtc 245  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26832561 aatggcgccaaaaggagagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtc 26832627  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 23401848 - 23401966
Alignment:
Q  129 attttcgattcccaaattcgaaaccctaactttcttcaattttcctatt---caatggcgcctaagggagagaagaagccagcagagaagaaacccgcag 225  Q
    |||||| |||||||| ||| ||||||||||||||||| |  |||| | |   ||||||| || |||||||||||||||||||| |||||||||||||| |    
T  23401848 attttcaattcccaa-ttcaaaaccctaactttcttccaacttccaaattctcaatggcaccaaagggagagaagaagccagcggagaagaaacccgctg 23401946  T
Q  226 aggagaagaagtccaccgtc 245  Q
    ||||||||||||||||||||    
T  23401947 aggagaagaagtccaccgtc 23401966  T

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Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 23408995 - 23408926
Alignment:
Q  176 ttcaatggcgcctaagggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtc 245  Q
    ||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  23408995 ttcaatggcaccaaagggagagaagaagccagcggagaagaaacccgctgaggagaagaagtccaccgtc 23408926  T

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Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 23453828 - 23453759
Alignment:
Q  175 attcaatggcgcctaagggagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgt 244  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  23453828 attcaatggcgccaaagggagagaagaagccagcggagaagaaacctgctgaggagaagaagtccaccgt 23453759  T

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Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 23885601 - 23885719
Alignment:
Q  129 attttcgattcccaaattcgaaaccctaactttcttcaattttcctatt---caatggcgcctaagggagagaagaagccagcagagaagaaacccgcag 225  Q
    |||||| |||||||| ||| ||||||||||||||||| |  |||| | |   ||||||| || |||||||||||||||||||||||||||||||| || |    
T  23885601 attttcaattcccaa-ttcaaaaccctaactttcttccaagttccaaattctcaatggcaccaaagggagagaagaagccagcagagaagaaaccagctg 23885699  T
Q  226 aggagaagaagtccaccgtc 245  Q
    ||||||||||||||||||||    
T  23885700 aggagaagaagtccaccgtc 23885719  T

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Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 23416210 - 23416093
Alignment:
Q  129 attttcgattcccaaattcgaaaccctaactttcttcaattttcctatt---caatggcgcctaagggagagaagaagccagcagagaagaaacccgcag 225  Q
    |||||| |||||||| ||| ||||||||||||||||| |  |||| | |   ||||||| || |||||||||||||||||||| ||||||||||| || |    
T  23416210 attttcaattcccaa-ttcaaaaccctaactttcttccaacttccaaattctcaatggcaccaaagggagagaagaagccagcggagaagaaaccagctg 23416112  T
Q  226 aggagaagaagtccaccgt 244  Q
    |||||||||||||||||||    
T  23416111 aggagaagaagtccaccgt 23416093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 34662463 - 34662427
Alignment:
Q  209 agagaagaaacccgcagaggagaagaagtccaccgtc 245  Q
    |||||||||||| |||||||||||||| |||||||||    
T  34662463 agagaagaaacctgcagaggagaagaaatccaccgtc 34662427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 14715337 - 14715397
Alignment:
Q  175 attcaatggcgcctaagggagagaagaagccagcagagaagaaacccgcagaggagaagaa 235  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  14715337 attcgatggcaccaaagtgagagaagaagccagctgagaagaaacccgcagaggagaagaa 14715397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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