View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0570_low_4 (Length: 523)
Name: NF0570_low_4
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0570_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 443
Target Start/End: Original strand, 33504253 - 33504663
Alignment:
| Q |
8 |
ccaagaatatacttgtttggatcgcaattcctcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaattt |
107 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33504253 |
ccaacaatatacttgtttggatcgcaactcctcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaattt |
33504352 |
T |
|
| Q |
108 |
ggggatattttggaaggctttgtttctaacggtggaattttaggagtgcaaatcgagtttctaaaattttctttcttggtttgatgctttatctgaatta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
33504353 |
agggatattttggaaggctttgtttctaaccgtggaattttaggagtgcaaatcgagtttctaaaat----tttcttggtttgatgccttatctgaattg |
33504448 |
T |
|
| Q |
208 |
catgatttgaataatttgatgtggatacatataatcaatattgttttgatagattgaaaaccccc-nnnnnnnngtgaacaggatgaaacccttaaaatt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
33504449 |
catgatttgaataatttgatgtggatacatataatcaatattgttttgatagattgaaaacccccgttttttttgtgaacaagatgaaacccttaaaatt |
33504548 |
T |
|
| Q |
307 |
taattgaattgttagtttattctctatgaataacaaatccaaaatcattgaatgacaaatccaaaattgttatggatgtgtagttgagattagtaatgat |
406 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33504549 |
taattgaattgttagtttattatctatgaataacaaatccaaaa----------------------ttgttatggatgtgtagttgagattagtaatgat |
33504626 |
T |
|
| Q |
407 |
taacaaattcatacacatgttttcagtattgaaagta |
443 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
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|
| T |
33504627 |
taacaaattcatacacatgctttcagtattgaaagta |
33504663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 22420258 - 22420147
Alignment:
| Q |
39 |
tcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaatttggggatattttggaaggctttgtttctaacg |
138 |
Q |
| |
|
||||||||| ||||| | |||||||||||||||| ||||||||| |||| |||||| | | |||||||| ||||||||| || || ||| |||||| | |
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|
| T |
22420258 |
tcatgaagacatttcttgtttatgtcaaatttataaaattgatctcaattggagtaagtttgtgaatttagggatatttcgg-cgggtttatttctacca |
22420160 |
T |
|
| Q |
139 |
gtggaattttagg |
151 |
Q |
| |
|
||||||||||||| |
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| T |
22420159 |
gtggaattttagg |
22420147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 4085064 - 4085223
Alignment:
| Q |
15 |
tatacttgtttggatcgcaattcctcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaatttggggata |
114 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
4085064 |
tatacttgtttcgatcgcagctcctcaccaagatatttcttatttatgtcaaatttattaaattgatcgcaataggagtatgatagtgaatttggagata |
4085163 |
T |
|
| Q |
115 |
ttttggaaggctttgtttctaacggtggaattttaggagtgcaaatcgagtttctaaaat |
174 |
Q |
| |
|
||||||| | ||||||| | |||||||||||| | |||||||||| ||||||||||||| |
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|
| T |
4085164 |
ttttggatgagtttgttttttacggtggaatttcatgagtgcaaatggagtttctaaaat |
4085223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 347
Target Start/End: Original strand, 4085296 - 4085419
Alignment:
| Q |
230 |
ggatacatataatcaat---attgttttgatagattgaaaacc--cccnnnnnnnngtgaacaggatgaaa-cccttaaaatttaattgaattgttagtt |
323 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||| ||||| || |||||| ||||| ||| |||||||||||| ||||| |
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|
| T |
4085296 |
ggatacatataatcaatctaattgttttgatagattgaaaaccacccctcttttttgtgaatagaatgaaaaccctttaaaattaattgaattggtagtt |
4085395 |
T |
|
| Q |
324 |
tattctctatgaataacaaatcca |
347 |
Q |
| |
|
|||||| | |||| |||||||||| |
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|
| T |
4085396 |
tattctatgtgaacaacaaatcca |
4085419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 3417542 - 3417701
Alignment:
| Q |
15 |
tatacttgtttggatcgcaattcctcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaatttggggata |
114 |
Q |
| |
|
|||| |||||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
3417542 |
tatatttgtttcgatcgcagctcctcaccaagatatttcttatttatgtcaaatttattaaattgatcgcaataggagtataatagtgaatttggagata |
3417641 |
T |
|
| Q |
115 |
ttttggaaggctttgtttctaacggtggaattttaggagtgcaaatcgagtttctaaaat |
174 |
Q |
| |
|
||||||||| ||||||| | |||||||||||| | |||||||||| ||||||||||||| |
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|
| T |
3417642 |
ttttggaagagtttgttttttacggtggaatttcatgagtgcaaatggagtttctaaaat |
3417701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 39205682 - 39205841
Alignment:
| Q |
8 |
ccaagaatatacttgtttggatcgcaattcctcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaattt |
107 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |||||| ||| | |||| |||| || |
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|
| T |
39205682 |
ccaacaataaacttgtttggata-caattcctcatgaagatattt------tatgtcaaatttattaaagtgattgcaatatgagcacggtaatgaactt |
39205774 |
T |
|
| Q |
108 |
ggggatattttggaaggctttgtttctaacggtggaattttaggagtgcaaatcgagtttctaaaat |
174 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||| |||||| |
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|
| T |
39205775 |
ggggatattttggaagggtttgtctctaacggtggacttttaggagtgaaaatcgagtttataaaat |
39205841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 347
Target Start/End: Original strand, 3417774 - 3417897
Alignment:
| Q |
230 |
ggatacatataatcaat---attgttttgatagattgaaaacc-cccnnnnnnnngtgaacaggatgaaa--cccttaaaatttaattgaattgttagtt |
323 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||| ||||| || |||||| || |||||| |||||||||||| ||||| |
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|
| T |
3417774 |
ggatacatataatcaatctaattgttttgatagattgaaaaccacccttctttttgtgaatagaatgaaaaccctttaaaagttaattgaattggtagtt |
3417873 |
T |
|
| Q |
324 |
tattctctatgaataacaaatcca |
347 |
Q |
| |
|
|||||| | |||| |||||||||| |
|
|
| T |
3417874 |
tattctatgtgaacaacaaatcca |
3417897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 22320140 - 22320201
Alignment:
| Q |
44 |
aagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |
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|
| T |
22320140 |
aagatatttcctatttatgtcaaatttattcaatttatcgcaattggagtatggtagtgaat |
22320201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 3163750 - 3163845
Alignment:
| Q |
7 |
tccaagaatatacttgtttggatcgcaattcctcatgaagatatttcctatttatgtcaaatttattaaattgatcgcaataggagtatggtagtgaat |
105 |
Q |
| |
|
||||| ||||| |||||||||| |||| ||||| || ||||||||||||||||||||||||||| |||| ||| |||| |||||||| |||||||| |
|
|
| T |
3163750 |
tccaacaatattgttgtttggattgcaa---ctcatcaatatatttcctatttatgtcaaatttattcaatttatcacaattggagtatgatagtgaat |
3163845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 16663946 - 16663900
Alignment:
| Q |
229 |
tggatacatataatcaatatt---gttttgatagattgaaaaccccc |
272 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
16663946 |
tggatacatataatcaatctttttgttttgatagattgaaaaccccc |
16663900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 17638306 - 17638260
Alignment:
| Q |
229 |
tggatacatataatcaatatt---gttttgatagattgaaaaccccc |
272 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
17638306 |
tggatacatataatcaatctttttgttttgatagattgaaaaccccc |
17638260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 347
Target Start/End: Complemental strand, 12345775 - 12345647
Alignment:
| Q |
225 |
gatgtggatacatataatcaat---attgttttgatagattgaaaacc--cccnnnnnnnngtgaacaggatgaaa-cccttaaaatttaattgaattgt |
318 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||| || |||||| ||||| ||| |||||||||||| |
|
|
| T |
12345775 |
gatgaggatacatataatcaatctaattgttttgatagattgaaaaccacccctcttttttgtgaatagaatgaaaaccctttaaagttaattgaattga |
12345676 |
T |
|
| Q |
319 |
tagtttattctctatgaataacaaatcca |
347 |
Q |
| |
|
||||||||||| | |||| |||||||||| |
|
|
| T |
12345675 |
tagtttattctatgtgaacaacaaatcca |
12345647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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