View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0570_low_5 (Length: 481)

Name: NF0570_low_5
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0570_low_5
NF0570_low_5
[»] chr4 (17 HSPs)
chr4 (237-347)||(24307076-24307186)
chr4 (234-347)||(26832588-26832701)
chr4 (243-343)||(23401931-23402031)
chr4 (234-347)||(26433877-26433990)
chr4 (234-347)||(26435657-26435770)
chr4 (243-343)||(23408861-23408961)
chr4 (234-343)||(23416018-23416127)
chr4 (234-343)||(23868589-23868698)
chr4 (234-347)||(23885680-23885793)
chr4 (240-344)||(34662359-34662463)
chr4 (246-343)||(23453696-23453793)
chr4 (159-203)||(23408777-23408821)
chr4 (165-203)||(23402071-23402109)
chr4 (165-203)||(23453615-23453653)
chr4 (159-199)||(26434025-26434065)
chr4 (159-199)||(26435805-26435845)
chr4 (159-199)||(26832736-26832776)
[»] chr2 (1 HSPs)
chr2 (295-343)||(14715372-14715420)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 237 - 347
Target Start/End: Complemental strand, 24307186 - 24307076
Alignment:
Q  237 gcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtt 336  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  24307186 gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt 24307087  T
Q  337 tcttctctgct 347  Q
    |||||||||||    
T  24307086 tcttctctgct 24307076  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 234 - 347
Target Start/End: Complemental strand, 26832701 - 26832588
Alignment:
Q  234 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 333  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26832701 ccggcggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26832602  T
Q  334 gtttcttctctgct 347  Q
    ||||||||||||||    
T  26832601 gtttcttctctgct 26832588  T

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Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 243 - 343
Target Start/End: Complemental strand, 23402031 - 23401931
Alignment:
Q  243 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  23402031 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct 23401932  T
Q  343 c 343  Q
    |    
T  23401931 c 23401931  T

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Target: chr4; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 234 - 347
Target Start/End: Complemental strand, 26433990 - 26433877
Alignment:
Q  234 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 333  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26433990 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26433891  T
Q  334 gtttcttctctgct 347  Q
    ||||||||||||||    
T  26433890 gtttcttctctgct 26433877  T

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Target: chr4; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 234 - 347
Target Start/End: Complemental strand, 26435770 - 26435657
Alignment:
Q  234 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 333  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26435770 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26435671  T
Q  334 gtttcttctctgct 347  Q
    ||||||||||||||    
T  26435670 gtttcttctctgct 26435657  T

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Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 243 - 343
Target Start/End: Original strand, 23408861 - 23408961
Alignment:
Q  243 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct 342  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  23408861 gaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct 23408960  T
Q  343 c 343  Q
    |    
T  23408961 c 23408961  T

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Target: chr4; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 234 - 343
Target Start/End: Original strand, 23416018 - 23416127
Alignment:
Q  234 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 333  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |    
T  23416018 ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctg 23416117  T
Q  334 gtttcttctc 343  Q
    ||||||||||    
T  23416118 gtttcttctc 23416127  T

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Target: chr4; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 23868698 - 23868589
Alignment:
Q  234 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 333  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  23868698 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgg 23868599  T
Q  334 gtttcttctc 343  Q
    ||||||||||    
T  23868598 gtttcttctc 23868589  T

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Target: chr4; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 234 - 347
Target Start/End: Complemental strand, 23885793 - 23885680
Alignment:
Q  234 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 333  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || |    
T  23885793 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctg 23885694  T
Q  334 gtttcttctctgct 347  Q
    ||||||||||||||    
T  23885693 gtttcttctctgct 23885680  T

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Target: chr4; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 34662359 - 34662463
Alignment:
Q  240 gctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct 339  Q
    |||||||| | ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  34662359 gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttct 34662458  T
Q  340 tctct 344  Q
    |||||    
T  34662459 tctct 34662463  T

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Target: chr4; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 246 - 343
Target Start/End: Original strand, 23453696 - 23453793
Alignment:
Q  246 ccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc 343  Q
    ||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |||||||||||    
T  23453696 ccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttcttctc 23453793  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 23408777 - 23408821
Alignment:
Q  159 acttgtttcagtactttgaatatgtagatcttgtatgtttctaca 203  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||    
T  23408777 acttgtttcagaactttgaagatgtagatcttgtatgtttctaca 23408821  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 23402109 - 23402071
Alignment:
Q  165 ttcagtactttgaatatgtagatcttgtatgtttctaca 203  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  23402109 ttcagaactttgaagatgtagatcttgtatgtttctaca 23402071  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 23453615 - 23453653
Alignment:
Q  165 ttcagtactttgaatatgtagatcttgtatgtttctaca 203  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  23453615 ttcagaactttgaagatgtagatcttgtatgtttctaca 23453653  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 26434065 - 26434025
Alignment:
Q  159 acttgtttcagtactttgaatatgtagatcttgtatgtttc 199  Q
    ||||||||||| || ||||| ||||||||||||||||||||    
T  26434065 acttgtttcagaaccttgaagatgtagatcttgtatgtttc 26434025  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 26435845 - 26435805
Alignment:
Q  159 acttgtttcagtactttgaatatgtagatcttgtatgtttc 199  Q
    ||||||||||| || ||||| ||||||||||||||||||||    
T  26435845 acttgtttcagaaccttgaagatgtagatcttgtatgtttc 26435805  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 26832776 - 26832736
Alignment:
Q  159 acttgtttcagtactttgaatatgtagatcttgtatgtttc 199  Q
    ||||||||||| || ||||| ||||||||||||||||||||    
T  26832776 acttgtttcagaaccttgaagatgtagatcttgtatgtttc 26832736  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 14715420 - 14715372
Alignment:
Q  295 gagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc 343  Q
    ||||||||||  |||| ||| | ||||||||||||||||||||||||||    
T  14715420 gagctttctcctcgacagtgtatttcttctcctctgcgggtttcttctc 14715372  T

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