View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0570_low_6 (Length: 443)

Name: NF0570_low_6
Description: NF0570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0570_low_6
NF0570_low_6
[»] chr1 (2 HSPs)
chr1 (1-367)||(28858395-28858761)
chr1 (33-140)||(47666415-47666522)
[»] chr4 (12 HSPs)
chr4 (362-440)||(23401946-23402024)
chr4 (362-440)||(23408868-23408946)
chr4 (362-443)||(24307092-24307173)
chr4 (362-443)||(26832604-26832685)
chr4 (362-443)||(26433893-26433974)
chr4 (362-443)||(26435673-26435754)
chr4 (363-443)||(34662370-34662450)
chr4 (362-440)||(23416034-23416112)
chr4 (362-443)||(23868601-23868682)
chr4 (362-440)||(23885699-23885777)
chr4 (362-440)||(23453700-23453778)
chr4 (56-140)||(52339221-52339305)
[»] chr7 (2 HSPs)
chr7 (33-138)||(27878615-27878720)
chr7 (28-131)||(32868300-32868403)
[»] chr3 (5 HSPs)
chr3 (48-140)||(20331695-20331787)
chr3 (48-140)||(20309514-20309606)
chr3 (84-130)||(26890847-26890893)
chr3 (64-140)||(26888352-26888428)
chr3 (33-130)||(20308278-20308376)
[»] chr5 (1 HSPs)
chr5 (33-78)||(33275269-33275314)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 28858761 - 28858395
Alignment:
Q  1 attctatatgtgatattgtttttcaaaaaggattatttatatgttaagtccttataaataggggttatttgagttttgttccatgaatttgctaatgctt 100  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |||    
T  28858761 attctatatgtgatattcttttttaaaaaggattatttatatgttaagtccctgtaaataggggttatttgagttttgttccattaatttgctaatcctt 28858662  T
Q  101 tcaaatttgtcatgcaaatattaatcacttgacttttggttcctacatccatttgatgatagacatgttattaatttgttggtttgacagagctgactgg 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| ||| |||| |||||||||||||    
T  28858661 tcaaatttgtcatgcaaatattaatcacttgacttttgattcctacacccatttgatgatagacatgttactaatttattgatttggcagagctgactgg 28858562  T
Q  201 tcaagtcacttgttgactcatcaaaagcttatgtgaatgaaccaaaattgattcatcaaaagcttatgtgaacgaaccaaaattctcgtgaggctttcaa 300  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28858561 tcaagtcacttgctgactcatcaaaagcttatgtgaacgaaccaaaattgactcatcaaaagcttatgtgaacgaaccaaaattctcatgaggctttcaa 28858462  T
Q  301 acaagtgtaaaataaccaaaatgccctcatgttcatcttctcaaataagcttccctattctcttcct 367  Q
    |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28858461 acaagcacaaaataaccaaaatgccctcatgttcatcttctcaaataagcttccctattctcttcct 28858395  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 47666522 - 47666415
Alignment:
Q  33 ttatttatatgttaagtccttataaataggggttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatcacttga 132  Q
    ||||||||| ||| ||||| |  |||||||||| | |||||||||  ||  ||||||| ||||| ||||||||||||   || |||||||||||||||||    
T  47666522 ttatttatacgtttagtccctgcaaataggggtcacttgagttttagtctctgaattttctaatcctttcaaatttgcgctgaaaatattaatcacttga 47666423  T
Q  133 cttttggt 140  Q
     |||||||    
T  47666422 gttttggt 47666415  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 362 - 440
Target Start/End: Complemental strand, 23402024 - 23401946
Alignment:
Q  362 cttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctc 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23402024 cttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctc 23401946  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 362 - 440
Target Start/End: Original strand, 23408868 - 23408946
Alignment:
Q  362 cttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctc 440  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23408868 cttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctc 23408946  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 362 - 443
Target Start/End: Complemental strand, 24307173 - 24307092
Alignment:
Q  362 cttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 443  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  24307173 cttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgc 24307092  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 362 - 443
Target Start/End: Complemental strand, 26832685 - 26832604
Alignment:
Q  362 cttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 443  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26832685 cttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgc 26832604  T

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Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 362 - 443
Target Start/End: Complemental strand, 26433974 - 26433893
Alignment:
Q  362 cttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 443  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26433974 cttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgc 26433893  T

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Target: chr4; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 362 - 443
Target Start/End: Complemental strand, 26435754 - 26435673
Alignment:
Q  362 cttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 443  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26435754 cttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgc 26435673  T

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Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 363 - 443
Target Start/End: Original strand, 34662370 - 34662450
Alignment:
Q  363 ttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 443  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  34662370 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgc 34662450  T

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Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 362 - 440
Target Start/End: Original strand, 23416034 - 23416112
Alignment:
Q  362 cttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctc 440  Q
    ||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  23416034 cttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctc 23416112  T

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Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 362 - 443
Target Start/End: Complemental strand, 23868682 - 23868601
Alignment:
Q  362 cttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 443  Q
    |||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  23868682 cttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgc 23868601  T

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Target: chr4; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 362 - 440
Target Start/End: Complemental strand, 23885777 - 23885699
Alignment:
Q  362 cttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctc 440  Q
    |||||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||    
T  23885777 cttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctc 23885699  T

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Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 362 - 440
Target Start/End: Original strand, 23453700 - 23453778
Alignment:
Q  362 cttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctc 440  Q
    ||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  23453700 cttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctc 23453778  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 52339221 - 52339305
Alignment:
Q  56 aaataggggttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatcacttgacttttggt 140  Q
    |||||||||| ||| |||||||| ||| ||||||| ||||| |||||||  ||  | ||||||||||||||||||||||||||||    
T  52339221 aaataggggtcattagagttttggtccctgaatttactaatcctttcaatctttccctgcaaatattaatcacttgacttttggt 52339305  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 27878720 - 27878615
Alignment:
Q  33 ttatttatatgttaagtccttataaataggggttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatcacttga 132  Q
    ||||||||||| | ||||| | |||||||| || | |||||||||  ||| ||||||||||||| || | || |||| ||||||||||||||||||||||    
T  27878720 ttatttatatgcttagtccctgtaaataggtgtcacttgagttttcgtccgtgaatttgctaatcctctaaattttgccatgcaaatattaatcacttga 27878621  T
Q  133 cttttg 138  Q
    ||||||    
T  27878620 cttttg 27878615  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 32868403 - 32868300
Alignment:
Q  28 aaggattatttatatgttaagtccttataaataggggttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatca 127  Q
    |||| |||| |||| ||| |||| ||| |||||||||| | |||||||||| |    | |||||||||| || |||| ||| ||||||||||||||||||    
T  32868403 aagggttatctatacgtttagtctttacaaataggggtcacttgagttttggttgtcgtatttgctaatcctatcaattttatcatgcaaatattaatca 32868304  T
Q  128 cttg 131  Q
    ||||    
T  32868303 cttg 32868300  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 20331787 - 20331695
Alignment:
Q  48 gtccttataaataggggttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatcacttgacttttggt 140  Q
    |||||||||||||||||| |||||| || || ||| ||||||| | ||| |||||||| ||| | ||||| |||||||||||||| |||||||    
T  20331787 gtccttataaataggggtcatttgaattctggtccctgaatttaccaatcctttcaaacttgccttgcaattattaatcacttgagttttggt 20331695  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 20309606 - 20309514
Alignment:
Q  48 gtccttataaataggggttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatcacttgacttttggt 140  Q
    |||| |||||||| |||| |||||| ||||| ||| ||||||| | ||| |||||||| ||| | ||||| |||||||||||||| |||||||    
T  20309606 gtccatataaataagggtcatttgaattttggtccctgaatttaccaatcctttcaaacttgccttgcaattattaatcacttgagttttggt 20309514  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 26890893 - 26890847
Alignment:
Q  84 tgaatttgctaatgctttcaaatttgtcatgcaaatattaatcactt 130  Q
    ||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  26890893 tgaatttgctaattctttcaaatttgacatgcaaatatgaatcactt 26890847  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 26888352 - 26888428
Alignment:
Q  64 gttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatcacttgacttttggt 140  Q
    |||| |||||||||| ||| ||||||||| ||| ||||||||| || | | |||||||||||||||||  |||||||    
T  26888352 gttacttgagttttggtccctgaatttgccaatcctttcaaatctgacgtccaaatattaatcacttgtgttttggt 26888428  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 20308278 - 20308376
Alignment:
Q  33 ttatttatatgttaagtccttataaataggggttatttgagttttgttccatgaatttgctaatgc-tttcaaatttgtcatgcaaatattaatcactt 130  Q
    |||||| ||| || ||||| ||||||||||||| |||||| ||||| ||| |||||||  |||| | ||| | ||||| | ||||||||||||||||||    
T  20308278 ttatttgtatatttagtccctataaataggggtaatttgaattttggtccctgaatttaataatcctttttatatttgccctgcaaatattaatcactt 20308376  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 33275269 - 33275314
Alignment:
Q  33 ttatttatatgttaagtccttataaataggggttatttgagttttg 78  Q
    ||||||| ||||| ||||||||||||||| ||| ||||||||||||    
T  33275269 ttatttacatgtttagtccttataaatagaggtcatttgagttttg 33275314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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