View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0571-INSERTION-1 (Length: 716)

Name: NF0571-INSERTION-1
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0571-INSERTION-1
NF0571-INSERTION-1
[»] chr6 (6 HSPs)
chr6 (165-696)||(1706245-1706777)
chr6 (8-203)||(1706770-1706965)
chr6 (71-203)||(34448393-34448526)
chr6 (70-218)||(5449485-5449635)
chr6 (91-203)||(5451067-5451180)
chr6 (86-218)||(34396935-34397066)
[»] chr2 (12 HSPs)
chr2 (88-227)||(4865474-4865612)
chr2 (70-218)||(37828633-37828781)
chr2 (71-202)||(25557836-25557969)
chr2 (131-203)||(34887885-34887957)
chr2 (102-227)||(29193172-29193297)
chr2 (165-218)||(37828570-37828623)
chr2 (135-222)||(23495088-23495171)
chr2 (70-203)||(29667569-29667702)
chr2 (68-147)||(37828444-37828522)
chr2 (136-199)||(41104735-41104798)
chr2 (165-218)||(37828601-37828655)
chr2 (76-148)||(23495215-23495287)
[»] chr1 (11 HSPs)
chr1 (66-191)||(42175219-42175344)
chr1 (81-203)||(27631011-27631134)
chr1 (134-221)||(29861615-29861700)
chr1 (165-218)||(29861555-29861608)
chr1 (70-201)||(30891957-30892087)
chr1 (165-218)||(30892145-30892198)
chr1 (70-199)||(51249167-51249296)
chr1 (165-218)||(51249327-51249380)
chr1 (160-218)||(30892077-30892135)
chr1 (138-203)||(628718-628783)
chr1 (165-218)||(30892113-30892167)
[»] chr8 (3 HSPs)
chr8 (60-218)||(1410636-1410793)
chr8 (165-227)||(1410564-1410626)
chr8 (163-218)||(8128886-8128941)
[»] chr7 (15 HSPs)
chr7 (81-194)||(23474940-23475053)
chr7 (81-194)||(23533280-23533393)
chr7 (81-200)||(23457368-23457488)
chr7 (81-200)||(23443346-23443470)
chr7 (69-218)||(1505542-1505692)
chr7 (70-227)||(9880930-9881087)
chr7 (165-218)||(2169146-2169199)
chr7 (71-220)||(2169175-2169322)
chr7 (69-203)||(42602532-42602667)
chr7 (67-137)||(23534134-23534204)
chr7 (165-218)||(23443466-23443519)
chr7 (165-218)||(23457319-23457372)
chr7 (67-116)||(23475742-23475791)
chr7 (176-221)||(25921188-25921233)
chr7 (71-131)||(29340840-29340901)
[»] chr5 (11 HSPs)
chr5 (81-218)||(17441350-17441487)
chr5 (81-218)||(17476120-17476257)
chr5 (70-227)||(41048648-41048805)
chr5 (165-222)||(17476085-17476142)
chr5 (81-218)||(7148294-7148431)
chr5 (165-218)||(7148409-7148462)
chr5 (111-182)||(4420602-4420673)
chr5 (138-216)||(7634880-7634958)
chr5 (279-325)||(17476194-17476240)
chr5 (165-218)||(7172433-7172486)
chr5 (165-218)||(18936632-18936685)
[»] chr3 (4 HSPs)
chr3 (85-220)||(30259621-30259757)
chr3 (70-227)||(6269801-6269958)
chr3 (76-134)||(30259858-30259916)
chr3 (165-218)||(30259733-30259786)
[»] chr4 (9 HSPs)
chr4 (91-201)||(53801475-53801585)
chr4 (100-218)||(12828505-12828624)
chr4 (165-254)||(53801359-53801448)
chr4 (112-218)||(20821699-20821805)
chr4 (70-119)||(26310405-26310454)
chr4 (70-146)||(52073270-52073344)
chr4 (165-201)||(12828491-12828527)
chr4 (165-213)||(20821815-20821863)
chr4 (165-218)||(20821783-20821837)


Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 165 - 696
Target Start/End: Complemental strand, 1706777 - 1706245
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactcatgtgcgatgcgtcaatgcaacgaatctgatttaagttgtgttgggt 264  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| ||||| | ||||  ||| ||||||||| ||||||    
T  1706777 tataacctacatgagttaattcacgctgggttataaccttagtgagttaactcatatgcgatgcgccaatgtagcgaacgtgacttaagttgtattgggt 1706678  T
Q  265 ataacacctgcattagttaacttacgtggatgtattttgatcagtttgtatgagagtgaacnnnnnnnattgggagaagagcatttttctaattcttggc 364  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |       ||||||||||||||| ||||||||||||||||    
T  1706677 ataacacctgcattagttaatttacgtggaggtattttgatcagtttgtatgaaagtgagcgttttt-attgggagaagagcaattttctaattcttggc 1706579  T
Q  365 ttttgaactattgaactattttgtttttgggtgatggctagaatggttccatttatttttgagaccatgatggggaaattaatatatgatccatagctat 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||    
T  1706578 ttttgaactattgaactattttgtttttgggtgatggctagaatggttccatttattgttgagaccatgatggggaaattaatat--gatccatagctat 1706481  T
Q  465 aatgataatggccaagattatttaagggatacctatactagtcaagtaaattagcaagaatcatatattttcaattcaacccctatatatagataggacc 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1706480 aatgataatggccaagattatttaagggatacctatactagtcaagtaaattagcaaaaatcatatattttcaattcaacccctatatatagataggacc 1706381  T
Q  565 accataatca----tacacaattagggcaccgagctaaacgtcacttgtttttggtcctttataccatttctctatatgtacttagtttattgatgtctt 660  Q
    ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1706380 accataatcaatcatacacaattagggcaccgagctaaacgtcacttgtttttggtcctttataccatttctctatatgtacttagtttattgatgtctt 1706281  T
Q  661 ctctttgtgctcaatatatttaaatatttggaaact 696  Q
    ||||||||||||||||||||||||||||||||||||    
T  1706280 ctctttgtgctcaatatatttaaatatttggaaact 1706245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 1706965 - 1706770
Alignment:
Q  8 atatcttggttgccttgattgcctcttcaattaggtttgttacattttggctataattcttggaaaactgctattctcccaacaaaaaacactcactctc 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  1706965 atatcttggttgccttgattgcctcttcagttaggtttgttacattttggctataattcttggaaaactgctcttctcccaacaaaaaagattcactctc 1706866  T
Q  108 atataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagttaactcacgctgggttataacct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  1706865 atataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacacgagttaattcacgttgggttataacct 1706770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 203
Target Start/End: Complemental strand, 34448526 - 34448393
Alignment:
Q  71 aaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataac 170  Q
    |||| |||| |||||| |||||||||||||||| | |||| ||||||| |||| ||||| ||||||| |||| |||| ||| |||||| |||||||| ||    
T  34448526 aaaattgctcttctccaaacaaaaaacactcacgcccatacaaactgaccaaaataccccccacgtgtgttagctcacgtttggtaagctgaagtatgac 34448427  T
Q  171 ctacatgagttaactcacgct-gggttataacct 203  Q
    | ||||||||| |||||| || ||||||||||||    
T  34448426 cgacatgagttgactcacactggggttataacct 34448393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 5449485 - 5449635
Alignment:
Q  70 gaaaactgctattctcccaacaaaaaa-cactcactctcatataaactgatcaaagtaccct-ccacgtgagttaactcatgttcggtaagttgaagtat 167  Q
    ||||| |||| |||||| ||||||||| |  |||||| |||| ||||||| |||| | |||| || |||||||||| ||| | |||| || |||||||||    
T  5449485 gaaaattgctcttctccaaacaaaaaagcgttcactcccatacaaactgaccaaaatgcccttccgcgtgagttaattcacgctcgggaaattgaagtat 5449584  T
Q  168 aacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    ||| | | ||||||||||||||||||||||||||||   ||||||||||||    
T  5449585 aacttgcgtgagttaactcacgctgggttataacctacatgagttaactca 5449635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 5451067 - 5451180
Alignment:
Q  91 aaaaaacactcactctcatataaactgatcaaagtaccct-ccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagttaactcacg 189  Q
    |||||||  |||||| |||| |||||||||||| | |||| || |||||||||| ||| | |||| ||| ||||||||||| | | ||||||||||||||    
T  5451067 aaaaaacgttcactcccatacaaactgatcaaaatgcccttccgcgtgagttaattcacgctcggaaagctgaagtataacttgcgtgagttaactcacg 5451166  T
Q  190 ctgggttataacct 203  Q
    ||||||||||||||    
T  5451167 ctgggttataacct 5451180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 34397066 - 34396935
Alignment:
Q  86 ccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagttaact 185  Q
    |||||| ||||| |||| ||||||| |||||||  ||| || ||  | |||||||||| ||| | ||| |||| ||||||||||||| | ||||||||||    
T  34397066 ccaacataaaacgctcattctcatacaaactgactaaaatatcc--cgcgtgagttaattcacgctcgataagctgaagtataacctgcgtgagttaact 34396969  T
Q  186 cacgctg-ggttataacctttgtgagttaactca 218  Q
    ||||||| | |||||||||   ||||||||||||    
T  34396968 cacgctgagattataacctacatgagttaactca 34396935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 4865474 - 4865612
Alignment:
Q  88 aacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagttaactca 187  Q
    ||||||||||  ||||||||||| ||||| | |||| ||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  4865474 aacaaaaaacgttcactctcatacaaacttaccaaaataccc-ccacgtgagttaactcacgtttggtaagctgaagtataacctacatgagttaactca 4865572  T
Q  188 cgctgggttataacctttgtgagttaactcatgtgcgatg 227  Q
    ||||||||||||||||   |||||||||||||||| ||||    
T  4865573 cgctgggttataacctacttgagttaactcatgtgggatg 4865612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 37828781 - 37828633
Alignment:
Q  70 gaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataa 169  Q
    ||||| |||| ||||||| |||||||||| ||||||  ||| ||||| | |||| ||||| ||||||||||||||||| | |||||||| |||| |||||    
T  37828781 gaaaattgctcttctcccgacaaaaaacattcactcctatacaaacttaccaaaataccccccacgtgagttaactcacgctcggtaagctgaaatataa 37828682  T
Q  170 cctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||    
T  37828681 cctacatgagttaactcacgctgggttataacctacatgagttaactca 37828633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 25557836 - 25557969
Alignment:
Q  71 aaaactgctattctcccaacaaaaaa-cactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataa 169  Q
    |||| |||| |||| ||||||||||| | ||||||| |||| ||||||| |||| ||| | ||||||| |||||||||  ||||||||| ||||||||||    
T  25557836 aaaattgctcttcttccaacaaaaaaacgctcactcccatacaaactgaccaaaatactccccacgtgtgttaactcacattcggtaagatgaagtataa 25557935  T
Q  170 cctacatgagttaactcacgctggg-ttataacc 202  Q
    |||||||||||||||||||| |||| ||||||||    
T  25557936 cctacatgagttaactcacgttgggcttataacc 25557969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 34887885 - 34887957
Alignment:
Q  131 ccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagttaactcacgctgggttataacct 203  Q
    ||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||  ||||||||||    
T  34887885 ccacgtgagttaattcacgttcgataagctgaagtataacctacatgagttaactcacgctaagttataacct 34887957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 102 - 227
Target Start/End: Original strand, 29193172 - 29193297
Alignment:
Q  102 actctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctac-atgagttaactcacg-ctgggttata 199  Q
    ||||||||| |||||||||||| ||||   |||||||||||||||| |||  ||||||||||||||||||| | |||| |||||||||| |  |||||||    
T  29193172 actctcatacaaactgatcaaaatacct--cacgtgagttaactcacgtttagtaagttgaagtataaccttcaatgaattaactcacgtcgaggttata 29193269  T
Q  200 acctttgtgagttaactcatgtgcgatg 227  Q
    ||||  |||| |||||||||||| ||||    
T  29193270 acctacgtgacttaactcatgtgggatg 29193297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 37828623 - 37828570
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  37828623 tataagctacatgagttaactcacgctaggttataacctgtgtgagttaactca 37828570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 23495088 - 23495171
Alignment:
Q  135 gtgagttaactcatgttcggtaagttgaagtataacctacatgagttaactcacgctgggttataacctttgtgagttaactcatgtg 222  Q
    ||||||||| ||||||||  ||||||||||||||| |||| |||||||| |||||||||||    ||||  |||||||||||||||||    
T  23495088 gtgagttaagtcatgttcaataagttgaagtataatctacgtgagttaattcacgctgggt----acctacgtgagttaactcatgtg 23495171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 29667569 - 29667702
Alignment:
Q  70 gaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataa 169  Q
    |||||||||| ||| ||||| ||||| |  |||||| |||| ||||| |  ||| |||| |||  ||||||||||||| | |||||||| |||| |||||    
T  29667569 gaaaactgctcttcacccaataaaaatcgttcactcccatacaaactaacaaaaataccttccgtgtgagttaactcacgctcggtaagctgaaatataa 29667668  T
Q  170 cctacatgagttaactcacgctgggttataacct 203  Q
    |||||  | ||||||||||||| || ||||||||    
T  29667669 cctactggggttaactcacgctaggatataacct 29667702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 37828444 - 37828522
Alignment:
Q  68 tggaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactca 147  Q
    ||||||| |||| |||||||||||||||||  |||||| |||| ||||||| |||| |||||| | ||||||||||||||    
T  37828444 tggaaaattgctcttctcccaacaaaaaacgatcactcacatacaaactgaccaaaataccct-cgcgtgagttaactca 37828522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 41104798 - 41104735
Alignment:
Q  136 tgagttaactcatgttcggtaagttgaagtataacctacatgagttaactcacgctgggttata 199  Q
    |||||||||||||| |||||||  | || |||||||||||||| ||||||| ||||||||||||    
T  41104798 tgagttaactcatgctcggtaaacttaaatataacctacatgacttaactcgcgctgggttata 41104735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 37828655 - 37828601
Alignment:
Q  165 tataacctacatgagttaactcacgctggg-ttataacctttgtgagttaactca 218  Q
    |||||||||||||||||||||||||||||| |||||| ||   ||||||||||||    
T  37828655 tataacctacatgagttaactcacgctgggattataagctacatgagttaactca 37828601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 23495287 - 23495215
Alignment:
Q  76 tgctattctcccaacaaaaaacactcac-tctcatataaactgatcaaagtaccctccacgtgagttaactcat 148  Q
    |||| ||||||||||||||||| | ||| ||| ||| |||| ||||||| ||||||||||||||||||| ||||    
T  23495287 tgctcttctcccaacaaaaaacgcacacatct-atacaaacggatcaaaataccctccacgtgagttaattcat 23495215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 66 - 191
Target Start/End: Complemental strand, 42175344 - 42175219
Alignment:
Q  66 cttggaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagt 165  Q
    ||||||||| |||| ||||||||||||||||||||||||| |||| |||| |||| || || |||||||||||||||||||| | |||||||| |||| |    
T  42175344 cttggaaaattgctcttctcccaacaaaaaacactcactcccatacaaaccgatcgaaatatcctccacgtgagttaactcacgctcggtaagctgaaat 42175245  T
Q  166 ataacctacatgagttaactcacgct 191  Q
    ||||||||||| | ||||||||||||    
T  42175244 ataacctacataatttaactcacgct 42175219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 27631011 - 27631134
Alignment:
Q  81 ttctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagt 180  Q
    ||||||||||||||||| ||||||| ||||||||||||  |||  ||   ||||||||||||||||| |||||||||| || |||||||| |||||||||    
T  27631011 ttctcccaacaaaaaacgctcactcccatataaactgactaaaacacatcccacgtgagttaactcacgttcggtaagctggagtataacttacatgagt 27631110  T
Q  181 taactcacgct-gggttataacct 203  Q
    ||| ||||||| ||||||||||||    
T  27631111 taattcacgctggggttataacct 27631134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 29861700 - 29861615
Alignment:
Q  134 cgtgagttaactcatgttcggtaagttgaagtataacctacatgagttaactcacgctgggttataacctttgtgagttaactcatgt 221  Q
    |||||||||||||||| |||||||| |||| |||||| ||||| |||||||||||||| ||||||||||  | |||||||||||||||    
T  29861700 cgtgagttaactcatgctcggtaagctgaaatataacatacattagttaactcacgctaggttataacc--tatgagttaactcatgt 29861615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 29861608 - 29861555
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  29861608 tataacctacatgagttaactcacgctgggttataacctgcgtgagttaactca 29861555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 201
Target Start/End: Original strand, 30891957 - 30892087
Alignment:
Q  70 gaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataa 169  Q
    ||||| |||| ||| |||||||||||  ||||||| ||||| ||||||| |||| || |||| |||||||||| |||| ||| |||||| || |||||||    
T  30891957 gaaaattgctcttcgcccaacaaaaattactcactttcatacaaactgaccaaaataacctc-acgtgagttagctcacgtttggtaagctggagtataa 30892055  T
Q  170 cctacatgagttaactcacgctgggttataac 201  Q
    | | | ||| |||||||||||||  |||||||    
T  30892056 cttgcgtgaattaactcacgctgaattataac 30892087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 30892145 - 30892198
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    |||||| |||||||||||||||||||| |||||||||||  |||||||||||||    
T  30892145 tataacatacatgagttaactcacgctaggttataacctacgtgagttaactca 30892198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 51249167 - 51249296
Alignment:
Q  70 gaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataa 169  Q
    ||||| |||| |||||||||||||| ||   ||||||||||||||||||  ||| || ||| | |||||||||||||| | | | |||| | || |||||    
T  51249167 gaaaattgctcttctcccaacaaaagacgtgcactctcatataaactgactaaaatatccttcgcgtgagttaactcacgcttgataagctaaaatataa 51249266  T
Q  170 cctacatgagttaactcacgctgggttata 199  Q
    |||||||| ||||||||  ||||| |||||    
T  51249267 cctacatgtgttaactcttgctggattata 51249296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 51249327 - 51249380
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    ||||||||||||||||||||||||||||| |||||| || || |||||||||||    
T  51249327 tataacctacatgagttaactcacgctggattataatctatgcgagttaactca 51249380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 30892077 - 30892135
Alignment:
Q  160 tgaagtataacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    |||| |||||| |||||||||||||| |||||||||||||||||   ||||||||||||    
T  30892077 tgaattataacttacatgagttaacttacgctgggttataacctacatgagttaactca 30892135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 628783 - 628718
Alignment:
Q  138 agttaactcatgttcggtaagttgaagtataacctacatgagttaactcacgctgggttataacct 203  Q
    |||||||||||||||||||||  ||| |||||||||| ||||||||| |||| |||  ||||||||    
T  628783 agttaactcatgttcggtaagcagaaatataacctacgtgagttaacacacgttggactataacct 628718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 30892113 - 30892167
Alignment:
Q  165 tataacctacatgagttaactcacgc-tgggttataacctttgtgagttaactca 218  Q
    |||||||||||||||||||||||||| ||||||||||| |   ||||||||||||    
T  30892113 tataacctacatgagttaactcacgcttgggttataacatacatgagttaactca 30892167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 60 - 218
Target Start/End: Complemental strand, 1410793 - 1410636
Alignment:
Q  60 ataattcttggaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagt 159  Q
    |||| |||| ||||| |||| ||||||||| ||||||||||||||  |||||||||| |||||| |||| ||||||||||||||||||||||||||||      
T  1410793 ataaatcttagaaaattgctcttctcccaa-aaaaaacactcactgccatataaactaatcaaaatacc-tccacgtgagttaactcatgttcggtaaac 1410696  T
Q  160 tgaagtataacctacatgagttaactcacgctg-ggttataacctttgtgagttaactca 218  Q
    |||| ||||| ||||||||||||| |||||||| | ||||||||||  | ||||||||||    
T  1410695 tgaattataaactacatgagttaattcacgctgtgtttataaccttcattagttaactca 1410636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 1410626 - 1410564
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactcatgtgcgatg 227  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||| ||||    
T  1410626 tataacctacatgagctaactcacgctgggttataatctatgtgagttaactcacgtgagatg 1410564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 8128941 - 8128886
Alignment:
Q  163 agtataacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    |||||| || ||||||||||||||| ||||  ||||||||| ||||||||||||||    
T  8128941 agtatatccaacatgagttaactcatgctgacttataacctatgtgagttaactca 8128886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 23474940 - 23475053
Alignment:
Q  81 ttctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagt 180  Q
    ||||||||||||||||| ||| ||| |||| ||| | | |||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  23474940 ttctcccaacaaaaaacgctctctcccataaaaatttaccaaaataccctccatgtgagttaactcacgtttggtaagttgaagtataacctacatgagt 23475039  T
Q  181 taactcacgctggg 194  Q
    ||||||| ||||||    
T  23475040 taactcatgctggg 23475053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 23533280 - 23533393
Alignment:
Q  81 ttctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagt 180  Q
    ||||||||||||||||  ||||||| |||| ||||| | |||| ||||| ||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  23533280 ttctcccaacaaaaaatgctcactcccataaaaacttaccaaaatacccaccacgtgagttaactcacgtttggtaagttggagtataacctacatgagt 23533379  T
Q  181 taactcacgctggg 194  Q
    ||||||| ||||||    
T  23533380 taactcatgctggg 23533393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 81 - 200
Target Start/End: Complemental strand, 23457488 - 23457368
Alignment:
Q  81 ttctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagt 180  Q
    |||||| |||||||||| ||||||| |||| ||||| | |||| |||| ||||||||||||||||||  || ||||||||| ||||||||||||||||||    
T  23457488 ttctccaaacaaaaaacgctcactcccataaaaacttaccaaaataccttccacgtgagttaactcacatttggtaagttggagtataacctacatgagt 23457389  T
Q  181 taactcacgct-gggttataa 200  Q
    ||||||| ||| |||||||||    
T  23457388 taactcatgctcgggttataa 23457368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 81 - 200
Target Start/End: Original strand, 23443346 - 23443470
Alignment:
Q  81 ttctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgt----gagttaactcatgttcggtaagttgaagtataacctacat 176  Q
    ||||||||||||||||| ||||||| |||| ||||| |||||| ||||||||||||    ||||||||||| ||| ||||| ||| ||||||||||||||    
T  23443346 ttctcccaacaaaaaacgctcactcccataaaaacttatcaaaataccctccacgtacgtgagttaactcacgtttggtaaattggagtataacctacat 23443445  T
Q  177 gagttaactcacgct-gggttataa 200  Q
    ||||||||||| ||| |||||||||    
T  23443446 gagttaactcatgctcgggttataa 23443470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 1505542 - 1505692
Alignment:
Q  69 ggaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtata 168  Q
    |||||| |||| |||||||||||||||||  | |||| ||||||||| || |||| ||||||||| |||||||||||||  |||| |||| |||||||||    
T  1505542 ggaaaattgctcttctcccaacaaaaaacgtttactcccatataaaccgaccaaaataccctccatgtgagttaactcacattcgataagctgaagtata 1505641  T
Q  169 acctacatgagttaactcacgct-gggttataacctttgtgagttaactca 218  Q
    |||| |||| |||||||||| || || |||||||||   ||||||||||||    
T  1505642 acctgcatgggttaactcacactaggattataacctacatgagttaactca 1505692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 9881087 - 9880930
Alignment:
Q  70 gaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataa 169  Q
    ||||| |||| ||||||||||||||    ||||||| |||| |||| || |||| ||||| |||| |  || |||||||||||||||||||| ||| |||    
T  9881087 gaaaattgctcttctcccaacaaaagtt-ctcactcccatacaaaccgaacaaaataccccccacatatgtgaactcatgttcggtaagttgtagtctaa 9880989  T
Q  170 cctacatgagttaactcacgct-gggttataacctttgtgagttaactcatgtgcgatg 227  Q
    | |||||||||||||||||||| || ||||||||| |||||||||||||| ||| ||||    
T  9880988 cttacatgagttaactcacgctaggattataacctatgtgagttaactcacgtgagatg 9880930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 2169199 - 2169146
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||    
T  2169199 tataacctacatgagttaactcatgctgggttataacctatgtgatttaactca 2169146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 2169322 - 2169175
Alignment:
Q  71 aaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataac 170  Q
    |||| |||| ||||||||||||||||| ||||||| |||| |||| ||||||| |||   || |||||||||||| | ||||  ||    ||||||||||    
T  2169322 aaaattgctcttctcccaacaaaaaacgctcactcccatacaaaccgatcaaaatac---ccgcgtgagttaacttacgttcaatataacgaagtataac 2169226  T
Q  171 ctacatgagttaactcacgctg-ggttataacctttgtgagttaactcatg 220  Q
    ||  |||||||||||||| ||| |||||||||||   ||||||||||||||    
T  2169225 ctgtatgagttaactcacactgaggttataacctacatgagttaactcatg 2169175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 42602532 - 42602667
Alignment:
Q  69 ggaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctc-cacgtgagttaactcatgttcggtaagttgaagtat 167  Q
    |||||| |||| |||||| ||||||||    ||||||||||| |||| ||||||| |||  |  || ||||||||||||| | | | |||  |||| |||    
T  42602532 ggaaaattgctcttctcctaacaaaaattgttcactctcatagaaaccgatcaaaatactttttcatgtgagttaactcacgattgataaactgaaatat 42602631  T
Q  168 aacctacatgagttaactcacgctgggttataacct 203  Q
    ||| ||||||||||||||||||||| ||||||||||    
T  42602632 aacatacatgagttaactcacgctgagttataacct 42602667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 23534204 - 23534134
Alignment:
Q  67 ttggaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtg 137  Q
    |||||||| |||| ||||||||||||||||  |||||||||||| ||||| |  ||| ||||| |||||||    
T  23534204 ttggaaaattgctcttctcccaacaaaaaatgctcactctcatacaaactaacaaaaatacccgccacgtg 23534134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 23443466 - 23443519
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    ||||| ||||||||| ||||||||| ||||||||||||   |||||||||||||    
T  23443466 tataatctacatgagctaactcacgttgggttataacccacgtgagttaactca 23443519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 23457372 - 23457319
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    ||||| ||||||||| ||||||||| ||||||||||||   |||||||||||||    
T  23457372 tataatctacatgagctaactcacgttgggttataacccacgtgagttaactca 23457319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 23475791 - 23475742
Alignment:
Q  67 ttggaaaactgctattctcccaacaaaaaacactcactctcatataaact 116  Q
    |||||||| |||| ||||||||||||||||  |||||||||||| |||||    
T  23475791 ttggaaaattgctcttctcccaacaaaaaatgctcactctcatacaaact 23475742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 25921233 - 25921188
Alignment:
Q  176 tgagttaactcacgctgggttataacctttgtgagttaactcatgt 221  Q
    |||||||||||||||| ||||||||||| | |||||||| ||||||    
T  25921233 tgagttaactcacgctcggttataacctatatgagttaattcatgt 25921188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 29340901 - 29340840
Alignment:
Q  71 aaaactgctattctcccaacaaaaaacact-cactctcatataaactgatcaaagtaccctc 131  Q
    |||| |||| |||||||| ||||||| | | ||||||||||||||||||||||| |||||||    
T  29340901 aaaattgctcttctcccaccaaaaaaaagttcactctcatataaactgatcaaaataccctc 29340840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 8e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 17441487 - 17441350
Alignment:
Q  81 ttctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagt 180  Q
    ||||||||||||||||| |||||||| | | ||| |||  ||| ||||| ||||||||||||||||| | |||||||| |||| ||||||||||||||||    
T  17441487 ttctcccaacaaaaaacgctcactcttacacaaattgactaaaatacccaccacgtgagttaactcacgctcggtaagctgaaatataacctacatgagt 17441388  T
Q  181 taactcacgctgggttataacctttgtgagttaactca 218  Q
    |||||||||||  ||||||||||   ||||||||||||    
T  17441387 taactcacgctatgttataacctgcatgagttaactca 17441350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 17476257 - 17476120
Alignment:
Q  81 ttctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagt 180  Q
    |||||||||||||||||  || |||||||| ||||||| |||| |||| |||||||||||||||||  |||||||||| | ||||||||||||||||| |    
T  17476257 ttctcccaacaaaaaacgttcgctctcatacaaactgaccaaaatacc-tccacgtgagttaactcgcgttcggtaagctaaagtataacctacatgaat 17476159  T
Q  181 taactcacgctg-ggttataacctttgtgagttaactca 218  Q
    ||||||||| || |||||||||||   ||||||||||||    
T  17476158 taactcacgttgaggttataacctacatgagttaactca 17476120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 70 - 227
Target Start/End: Original strand, 41048648 - 41048805
Alignment:
Q  70 gaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataa 169  Q
    ||||| |||| ||||||||||||||||| | ||||| |||| |||||  ||||| ||||| | | ||||| ||||| |||||||||||| ||||||||||    
T  41048648 gaaaattgctcttctcccaacaaaaaacgcacactcccatacaaactagtcaaaataccc-ctatgtgagctaacttatgttcggtaagctgaagtataa 41048746  T
Q  170 cctacatgagttaactcacgct-gggttataacctttgtgagttaactcatgtgcgatg 227  Q
    | || ||||||||||||||| | |||||||||||    |||||||||||| ||| ||||    
T  41048747 catatatgagttaactcacgttggggttataaccgacatgagttaactcacgtgggatg 41048805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 17476142 - 17476085
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactcatgtg 222  Q
    ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||    
T  17476142 tataacctacatgagttaactcacgctggattataacctacgtgagttaactcatgtg 17476085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 81 - 218
Target Start/End: Original strand, 7148294 - 7148431
Alignment:
Q  81 ttctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagt 180  Q
    ||||||||||||||||  ||||||| |||| ||||||| |||| ||| | | ||||||||||||||| | ||| || | |||| |||||||||  | |||    
T  7148294 ttctcccaacaaaaaag-ctcactcccatacaaactgaccaaaatactccctacgtgagttaactcacgctcgataggctgaaatataacctatttaagt 7148392  T
Q  181 taactcacgct-gggttataacctttgtgagttaactca 218  Q
    ||||||||||| ||||||||||||   ||||||||||||    
T  7148393 taactcacgctggggttataacctacatgagttaactca 7148431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 7148409 - 7148462
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    |||||||||||||||||||||||||||| ||||||||||  |||||||||||||    
T  7148409 tataacctacatgagttaactcacgctgagttataacctacgtgagttaactca 7148462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 4420673 - 4420602
Alignment:
Q  111 taaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagtta 182  Q
    |||||||| |||| |||  ||||||||| |||||||| ||| |||||  |||||||||||||||||||||||    
T  4420673 taaactgaccaaaatactttccacgtgaattaactcacgtttggtaaactgaagtataacctacatgagtta 4420602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 7634958 - 7634880
Alignment:
Q  138 agttaactcatgttcggtaagttgaagtataacctacatgagttaactcacgctgggttataacctttgtgagttaact 216  Q
    |||||||||| | |||||||| | || |||||||||||||| ||||||||||||| || |||||||  ||||| |||||    
T  7634958 agttaactcaggctcggtaagctaaaatataacctacatgaattaactcacgctgagtcataacctgcgtgaggtaact 7634880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 17476194 - 17476240
Alignment:
Q  279 agttaacttacgtggatgtattttgatcagtttgtatgagagtgaac 325  Q
    |||||||| ||||||| |||||||| |||||||||||||||| ||||    
T  17476194 agttaactcacgtggaggtattttggtcagtttgtatgagagcgaac 17476240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 7172486 - 7172433
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    |||||||||||| ||||||||||||||| |||||||| |  |||| ||||||||    
T  7172486 tataacctacataagttaactcacgctgtgttataacatgcgtgaattaactca 7172433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 18936632 - 18936685
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    ||||||||| || |||||||||||| || ||||||||||  |||||||||||||    
T  18936632 tataacctatataagttaactcacgatgtgttataacctacgtgagttaactca 18936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 30259621 - 30259757
Alignment:
Q  85 cccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagttaac 184  Q
    |||||||||||||  ||||| ||||| ||||||| |||| ||| |  |||||||||||||||| ||||||| || |||||||||||||||||||||||||    
T  30259621 cccaacaaaaaacgatcactttcatacaaactgaccaaaatactcgtcacgtgagttaactcacgttcggtcagatgaagtataacctacatgagttaac 30259720  T
Q  185 tcacgct-gggttataacctttgtgagttaactcatg 220  Q
    ||||| | ||||||||||||    |||||||||||||    
T  30259721 tcacgttggggttataacctacaagagttaactcatg 30259757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 6269958 - 6269801
Alignment:
Q  70 gaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataa 169  Q
    ||||||| || |||||||||||||||||    ||||||||  ||||| |  ||| |||| |  | ||||||||||| | ||||||||||||||| |||||    
T  6269958 gaaaactactcttctcccaacaaaaaacgtcaactctcatgcaaactaacgaaaataccttttatgtgagttaacttaagttcggtaagttgaaatataa 6269859  T
Q  170 cctacatgagttaactcacgctgggttataacctttgtgagttaactcatgtgcgatg 227  Q
     ||||||||||||||||||| | | |||||| ||  ||||||||||||| ||| ||||    
T  6269858 tctacatgagttaactcacgttagattataatctacgtgagttaactcacgtgagatg 6269801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 30259916 - 30259858
Alignment:
Q  76 tgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccac 134  Q
    |||| ||||||||||||||||| ||||||| |||| |||||||||||| ||||| ||||    
T  30259916 tgctcttctcccaacaaaaaacgctcactcccatacaaactgatcaaaatacccaccac 30259858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 30259733 - 30259786
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactca 218  Q
    ||||||||||| ||||||||||| |||||||||| ||||   ||||||||||||    
T  30259733 tataacctacaagagttaactcatgctgggttatgacctacatgagttaactca 30259786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 53801585 - 53801475
Alignment:
Q  91 aaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagttaactcacgc 190  Q
    |||||||  ||||||||| | ||||||| |||| ||| ||||||||||||||||||| ||||| |||| ||||||||||||||||   ||||||||||||    
T  53801585 aaaaaacgttcactctcaaacaaactgaccaaaatactctccacgtgagttaactcacgttcgataagctgaagtataacctacaaatgttaactcacgc 53801486  T
Q  191 tgggttataac 201  Q
    || ||||||||    
T  53801485 tgagttataac 53801475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 12828624 - 12828505
Alignment:
Q  100 tcactctcatataaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagttaactcacgct-gggttat 198  Q
    ||||||||||| ||||||| |||| || |   |||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||  | |||||||    
T  12828624 tcactctcatacaaactgaccaaaatatctctcacgtgagttaactcacgttcggtaagatgaagtataacctacatgggttaactcacaatggggttat 12828525  T
Q  199 aacctttgtgagttaactca 218  Q
    |||||   ||||||||||||    
T  12828524 aacctacatgagttaactca 12828505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 53801448 - 53801359
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagttaactcatgtgcgatgcgtcaatgcaacgaatctgatttaagt 254  Q
    ||||||||||||||||||||||||| ||||||||||| |  | ||||||||||||||  || | ||||||| | ||||| ||| ||||||    
T  53801448 tataacctacatgagttaactcacgttgggttataacatacgagagttaactcatgtaggacgtgtcaatgtagcgaatgtgacttaagt 53801359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 20821699 - 20821805
Alignment:
Q  112 aaactgatcaaagtaccctccacgtgagttaactcatgttcggtaagttgaagtataacctacatgagttaactcacgctgggttataacctttgtgagt 211  Q
    |||||||||||| || | || |||||| |||||||||||| |||||| ||||||||||  |   |||||||||| |||||  ||||||||||   |||||    
T  20821699 aaactgatcaaaatatcttctacgtgaattaactcatgtttggtaagctgaagtataatatgtgtgagttaacttacgcttagttataacctacatgagt 20821798  T
Q  212 taactca 218  Q
    |||||||    
T  20821799 taactca 20821805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 26310454 - 26310405
Alignment:
Q  70 gaaaactgctattctcccaacaaaaaacactcactctcatataaactgat 119  Q
    ||||| |||| |||||||||||||||||||||||| ||||| ||||||||    
T  26310454 gaaaattgcttttctcccaacaaaaaacactcactttcatacaaactgat 26310405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 52073270 - 52073344
Alignment:
Q  70 gaaaactgctattctcccaacaaaaaacactcactctcatataaactgatcaaagtaccctccacgtgagttaactc 146  Q
    ||||| |||| ||||||||||||||||||| ||||| ||||||||| | ||||| ||||  |||||| |||||||||    
T  52073270 gaaaattgctcttctcccaacaaaaaacacacactcccatataaacggttcaaaatacc--ccacgtaagttaactc 52073344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 12828527 - 12828491
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataac 201  Q
    ||||||||||||||||||||||||| |||||||||||    
T  12828527 tataacctacatgagttaactcacgttgggttataac 12828491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 20821815 - 20821863
Alignment:
Q  165 tataacctacatgagttaactcacgctgggttataacctttgtgagtta 213  Q
    ||||||||||||||||||||||||| ||| |||||||||  ||||||||    
T  20821815 tataacctacatgagttaactcacgttggattataacctaagtgagtta 20821863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 20821783 - 20821837
Alignment:
Q  165 tataacctacatgagttaactcacgctgg-gttataacctttgtgagttaactca 218  Q
    |||||||||||||||||||||||||| || ||||||||||   ||||||||||||    
T  20821783 tataacctacatgagttaactcacgccggtgttataacctacatgagttaactca 20821837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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