View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571-INSERTION-11 (Length: 628)
Name: NF0571-INSERTION-11
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571-INSERTION-11 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 129 - 473
Target Start/End: Original strand, 32196137 - 32196482
Alignment:
| Q |
129 |
taattcgtaaatttaagatacaaaatgtttgccaaaataacagtaaaactcaatgtgtgacactaatacaattatcgtgtatgtagcgagtaaacacctt |
228 |
Q |
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| T |
32196137 |
taattcgtaaatttaagatacaaaatgtttgccaaaataacagtaaaactcaatgtgtgacactgatacaattatcgtgtatgtagcgagtaaacacctt |
32196236 |
T |
|
| Q |
229 |
gtcttatgtatctccatgtgtgttacactaagcacttgcgtcatttctccgcatatgtcccctataaggtttctaaagagaatgatgtacccagtacaat |
328 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32196237 |
gtcttatgtatctccatgtgtgttacactaggcacttgcgtcatttctccgcatatgtcccctataaggtttctaa--agaatgatgtacccagtacaat |
32196334 |
T |
|
| Q |
329 |
aatgcactagatggtgtgccacacataggaaaggagatatggacacnnnnnnnattctttccttttcactattccgaagggtcacattgtctgtgttgtt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32196335 |
aatgcactagatggtgtgccacacataggaaaggagatatggacactttttttattctttccttttcactattccgaagggtcacattgtctgtgttgtt |
32196434 |
T |
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| Q |
429 |
attgtttggagatat---atattacactcatttgtccacatgaaatat |
473 |
Q |
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| T |
32196435 |
attgtttggagatatataatattacactcatttgtccacatgaaatat |
32196482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 505 - 628
Target Start/End: Original strand, 32196482 - 32196605
Alignment:
| Q |
505 |
tacaaaaagagagga-gaacaataccttttctgtgaactgcatttcatgatggtggggacgaaaagattatctggttactagcatagaaagagcttttca |
603 |
Q |
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| T |
32196482 |
tacaaaaagagaggaagaacaataccttttttgtgaactgcatttcatgatgatgggg-caaaaagattatctgtttactagcatagaaagagcttttca |
32196580 |
T |
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| Q |
604 |
tagtaattctgatgtactaagctgg |
628 |
Q |
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| T |
32196581 |
tagtaatgctgatgtactaagctgg |
32196605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 32196046 - 32196123
Alignment:
| Q |
8 |
tctctctctcgtttcgtttgccttatcattctctccattccaagcaattcttctactcttgttatcatttttaactta |
85 |
Q |
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| T |
32196046 |
tctctctctcgtttcgtttgccttatcattctctccattccaagcaaatcttctactcttgttatcatttttaactta |
32196123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 457 - 596
Target Start/End: Complemental strand, 11341913 - 11341771
Alignment:
| Q |
457 |
ttgtccacatgaaatatgtgaagtaaatgccccaacctccctagtctctacaaaaagag-aggagaaca---ataccttttctgtgaactgcatttcatg |
552 |
Q |
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|||| |||| |||| |||||||| ||||||||||||||||||| || |||||||||||| || |||||| | | | ||| |||||||||||||| ||| |
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| T |
11341913 |
ttgttcacaggaaaaatgtgaagcaaatgccccaacctccctaatccctacaaaaagagaagaagaacaaacaaatcctttttgtgaactgcatttgatg |
11341814 |
T |
|
| Q |
553 |
atggtggggacgaaaagattatctggttactagcatagaaagag |
596 |
Q |
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| T |
11341813 |
atgttagtg-caaaaagattatctgtttcctggcatagaaagag |
11341771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 457 - 596
Target Start/End: Complemental strand, 11499932 - 11499790
Alignment:
| Q |
457 |
ttgtccacatgaaatatgtgaagtaaatgccccaacctccctagtctctacaaaaagag-aggagaaca---ataccttttctgtgaactgcatttcatg |
552 |
Q |
| |
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|||| |||| |||| |||||||| ||||||||||||||||||| || |||||||||||| || |||||| | | | ||| |||||||||||||| ||| |
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| T |
11499932 |
ttgttcacaggaaaaatgtgaagcaaatgccccaacctccctaatccctacaaaaagagaagaagaacaaacaaatcctttttgtgaactgcatttgatg |
11499833 |
T |
|
| Q |
553 |
atggtggggacgaaaagattatctggttactagcatagaaagag |
596 |
Q |
| |
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| T |
11499832 |
atgttagtg-caaaaagattatctgtttcctggcatagaaagag |
11499790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 11341960 - 11341909
Alignment:
| Q |
382 |
attctttccttttcactattccgaagggtcacattgtctgtgttgttattgtt |
434 |
Q |
| |
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|||||||||||||||||||| || ||||||| | ||| ||||||||||||||| |
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| T |
11341960 |
attctttccttttcactattacg-agggtcatactgtttgtgttgttattgtt |
11341909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 11499979 - 11499928
Alignment:
| Q |
382 |
attctttccttttcactattccgaagggtcacattgtctgtgttgttattgtt |
434 |
Q |
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|||||||||||||||||||| || ||||||| | ||| ||||||||||||||| |
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| T |
11499979 |
attctttccttttcactattacg-agggtcatactgtttgtgttgttattgtt |
11499928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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