View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571-INSERTION-12 (Length: 410)
Name: NF0571-INSERTION-12
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571-INSERTION-12 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 8797833 - 8797668
Alignment:
| Q |
8 |
ggtggtacagcgagagcattggactcgcctggttggagaacgaagccggtggtggagaacggttctgtcccggcgccggataaaattcccggccaaactg |
107 |
Q |
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| T |
8797833 |
ggtggtacagcgagagcattggactcgcctggttggagaacgaagccggtggtggagaacggttctgtcccggcgccggataaaattcccggccaaactg |
8797734 |
T |
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| Q |
108 |
tgtaaccgcaattgtttacaattgtgaatgttgttgaatatgaacctgtaataataacatgttgaa |
173 |
Q |
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| T |
8797733 |
tgtaaccgcaattgttcacaattgtgaatgttgttgaatatgaacctgtaataataacatgttgaa |
8797668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 246 - 410
Target Start/End: Complemental strand, 8797598 - 8797433
Alignment:
| Q |
246 |
ctaaactgcatgtttggcatcaatgttagattttttagaattacaatagatcagatgattctgacatactcatcgtgaatgataaatc-aaaataacttg |
344 |
Q |
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| T |
8797598 |
ctaaactgcatgtttggcatcaatgttagattttttagaattacaatagattacatgattctgacatactcattgtaaatgagaaatcaaaaataacttg |
8797499 |
T |
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| Q |
345 |
gtgtgaaatgttacctattaggagttggtagagaattagggcaatcaaagtggtgacaaattgagt |
410 |
Q |
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| T |
8797498 |
gtgtgaaatgttacctattacgagttggtagagaattagggcaaccaaagtgatgacaaattgagt |
8797433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 14039800 - 14039928
Alignment:
| Q |
23 |
gcattggactcgcctggttggagaacgaagccggtggtggagaacggttctgtcccggcgccggataaaattcccggccaaactgtgtaaccgcaattgt |
122 |
Q |
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| T |
14039800 |
gcattggattcgccgggttggagagcaaaaccggttgtagagaatggtgttgttcctgcgccggataaaattccaggccaaacagtgtagttgcacttgt |
14039899 |
T |
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| Q |
123 |
ttacaattgtgaatgttgttgaatatgaa |
151 |
Q |
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| T |
14039900 |
taacaattgtgaatgttgttgcatatgaa |
14039928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 18954777 - 18954904
Alignment:
| Q |
29 |
gactcgcctggttggagaacgaagccggtggtggagaacggttctgtcccggcgccggataaaattcccggccaaactgtgtaaccgcaattgtttacaa |
128 |
Q |
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|||||||| ||||| ||| | ||||||||||||||||| ||| ||| |||| |||||||||||||| |||||||||||||| || ||||| ||| |
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| T |
18954777 |
gactcgccgggttgaagagcaaagccggtggtggagaagggtgttgtgtcggcaccggataaaattcctggccaaactgtgtatttacagttgttagcaa |
18954876 |
T |
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| Q |
129 |
ttgtgaatgttgttgaatatgaacctgt |
156 |
Q |
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| T |
18954877 |
ttgtgaatgttgtggaataagaacctgt |
18954904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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