View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0571-INSERTION-13 (Length: 701)
Name: NF0571-INSERTION-13
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571-INSERTION-13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 7 - 430
Target Start/End: Complemental strand, 25376874 - 25376449
Alignment:
| Q |
7 |
aaattcaattatgaacacatgacacttgcattaattagccgttaattaatgagaataaaaaacaaggaaaggaatagcgattttnnnnnnngaattggtg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25376874 |
aaattcaattatgaacacatgacacttgcattaattagccgttaattaatgagaataaaaaacaaggaaaggaatagcgattttaaaaaaagaattggtg |
25376775 |
T |
|
| Q |
107 |
tgcttattgtaagccattttgtagtattactttcctttgaatacacaaagaagaagaga--aaaggaaaactgtgcaacaaagatcagaagatttgaatt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25376774 |
tgcttattgtaagccattttgtagtattactttcctttgagtacacaaagaagaagagagaaaaggaaaactgtgcaacaaagatcagaagatttgaatt |
25376675 |
T |
|
| Q |
205 |
tgatgaatctttggtgccaaatagcaatgggtttgtttccaagatttggccgtccagaagaaagttcatgaattgagctcaaagtttcaaacctattatt |
304 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
25376674 |
tgatgaatctttgatgccaaatagcaatgggtttgtttccaagatttggccgtccagaagaaagttcatgaattgagctcaaagtttcaaacctattctt |
25376575 |
T |
|
| Q |
305 |
tgcaaattgtgggtcaactgtggaaatttatgatgatgatattgcttctgttttgtgcatatttgttgaactgcaacaaatgaggaaaagagtttgcagc |
404 |
Q |
| |
|
|||||||||||| || |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25376574 |
cgcaaattgtgggccagctgtgggaatttatgatgatgatattgcttttgttttgtgcatatttgttgaactgcaacaaatgaggaaaagagtttgcagc |
25376475 |
T |
|
| Q |
405 |
acctccctgttggagagaggaagagg |
430 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
25376474 |
acctccctgttggagagaggaagagg |
25376449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 462 - 696
Target Start/End: Complemental strand, 25376416 - 25376185
Alignment:
| Q |
462 |
tgatgggtggaataagatatagtgcagtgaatgcatgatagaatctataagcttgttcaatctaatggatagaaatgttggtccggtatggaccaataca |
561 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25376416 |
tgatgggtgaaataagatatagtgcagtgaatgcatgatagaatctataagcttgtttaatctaatggatagaaatgttggtccagtatggaccaataca |
25376317 |
T |
|
| Q |
562 |
tctatgagtccatgctaaatggcaccattatatggaacatatcgaagtgaaccaaagtgttttagtgagcataaaatgcccctgaccgtcatgaatacac |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25376316 |
tctatgagtccatgctaaatggcaccattatgtggaacatatcgaagtgaaccaaagtgttttagtgagcataaaatgcccctgaccgtcatgaataca- |
25376218 |
T |
|
| Q |
662 |
cgtcacaaacccccacacccttaatggttttttcc |
696 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| |
|
|
| T |
25376217 |
cgtcacaaa-ccccacaccc-taatggttttttcc |
25376185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 498 - 585
Target Start/End: Original strand, 52694725 - 52694812
Alignment:
| Q |
498 |
gatagaatctataagcttgttcaatctaatggatagaaatgttggtccggtatggaccaatacatctatgagtccatgctaaatggca |
585 |
Q |
| |
|
||||| ||||||||| |||||||| ||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52694725 |
gataggatctataagtttgttcaagctaatggtcagaaatcttgatccagtatggaccaatacatctatgagtccatgctaaacggca |
52694812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 580
Target Start/End: Original strand, 54392200 - 54392303
Alignment:
| Q |
477 |
gatatagtgcagtgaatgcatgatagaatctataagcttgttcaatctaatggatagaaatgttggtccggtatggaccaatacatctatgagtccatgc |
576 |
Q |
| |
|
|||||| || ||||||| |||| || |||||||||||||| ||| |||||| |||||| ||| ||| ||||||||||||||| |||| |||||| | |
|
|
| T |
54392200 |
gatataatggagtgaatacatggtaagatctataagcttgtgtaatttaatggtcagaaatcttgatccaatatggaccaatacatgtatgggtccatcc |
54392299 |
T |
|
| Q |
577 |
taaa |
580 |
Q |
| |
|
|||| |
|
|
| T |
54392300 |
taaa |
54392303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 430
Target Start/End: Original strand, 41422516 - 41422930
Alignment:
| Q |
7 |
aaattcaattatgaacacatgacacttgcattaattagccgttaattaatgagaataaaaaacaaggaaaggaatagcgattttnnnnnnngaattggtg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
41422516 |
aaattcaattatgaacacatgacacttgcattaattagccgttaattaatgagaataaaaaacaaggaaaggaaaagcgattttaaaaaaagaattggtg |
41422615 |
T |
|
| Q |
107 |
tgcttattgtaagccattttgtagtattactttcctttgaatacacaaagaagaagag--aaaaggaaaactgtgcaacaaagatcagaagatttgaatt |
204 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
41422616 |
tgcttattgtaagatattttgtagtatcactttcctttgagtacacaaagaagaagagagaaaaggaaaattgtgcaacaaatatcagaagatttgaatt |
41422715 |
T |
|
| Q |
205 |
tgatgaatctttggtgccaaatagcaatgggtttgtttccaagatttggccgtccagaagaaagttcatgaattgagctcaaagtttcaaacctattatt |
304 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
41422716 |
tgatgaatctttgatgccaaataacaatgggtttgtttccaagatatggccgttcagaagaaagttcatgaattgagctcaaagttttaaacctattctt |
41422815 |
T |
|
| Q |
305 |
tgcaaattgtgggtcaactgtggaaatttatgatgatgatattgcttctgttttgtgcatatttgttgaactgcaacaaatgaggaaaagagtttgcagc |
404 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
41422816 |
tacaaattgtggg-----------aatttatgatgatgatattgcttctgttttgtgtatatttgttgaactgcagcaaacgaggaaaagagtttgcagc |
41422904 |
T |
|
| Q |
405 |
acctccctgttggagagaggaagagg |
430 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41422905 |
acctccctgttggagagaggaagagg |
41422930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 462 - 587
Target Start/End: Original strand, 41422961 - 41423086
Alignment:
| Q |
462 |
tgatgggtggaataagatatagtgcagtgaatgcatgatagaatctataagcttgttcaatctaatggatagaaatgttggtccggtatggaccaataca |
561 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | |||| |||||||||| |
|
|
| T |
41422961 |
tgatgggtggaataagatacagtgaagtgaatgcatgatagaatctataagcttgtttaatctaatggataaaaatgttggttcagtatagaccaataca |
41423060 |
T |
|
| Q |
562 |
tctatgagtccatgctaaatggcacc |
587 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41423061 |
tctatgagtccatgctaaatggcacc |
41423086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 588
Target Start/End: Complemental strand, 22629290 - 22629200
Alignment:
| Q |
498 |
gatagaatctataagcttgttcaatctaatggatagaaatgttggtccggtatggaccaatacatctatgagtccatgctaaatggcacca |
588 |
Q |
| |
|
||||| ||||||||| |||||||| |||||| | |||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22629290 |
gataggatctataagtttgttcaagttaatggtcaaaaatcttgatccagtatggaccaatacatctatgagtccatgctaaacggcacca |
22629200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 504 - 589
Target Start/End: Complemental strand, 43038795 - 43038710
Alignment:
| Q |
504 |
atctataagcttgttcaatctaatggatagaaatgttggtccggtatggaccaatacatctatgagtccatgctaaatggcaccat |
589 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
43038795 |
atctataagtttgttcaagctaatggtcagaaatcttgatccagtatggaccaatacatctatgagtccatgctaaacgacaccat |
43038710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 498 - 587
Target Start/End: Complemental strand, 51194736 - 51194647
Alignment:
| Q |
498 |
gatagaatctataagcttgttcaatctaatggatagaaatgttggtccggtatggaccaatacatctatgagtccatgctaaatggcacc |
587 |
Q |
| |
|
||||| |||||||| |||||||| ||||||| |||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
51194736 |
gataggatctataaatttgttcaagctaatggtaagaaatcttggtccagtatggaccaatacatccatgagtccatgctaaacggcacc |
51194647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 488 - 580
Target Start/End: Original strand, 22453570 - 22453662
Alignment:
| Q |
488 |
gtgaatgcatgatagaatctataagcttgttcaatctaatggatagaaatgttggtccggtatggaccaatacatctatgagtccatgctaaa |
580 |
Q |
| |
|
|||||||||| |||| |||||||| ||||| |||||||||| | |||| ||||||| | |||||||||||||| ||| || ||||||||| |
|
|
| T |
22453570 |
gtgaatgcattataggatctataaacttgtataatctaatggtcataaatcttggtccaatctggaccaatacatccatgggtgcatgctaaa |
22453662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2048 times since January 2019
Visitors: 3811