View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0571-INSERTION-14 (Length: 607)

Name: NF0571-INSERTION-14
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0571-INSERTION-14
NF0571-INSERTION-14
[»] chr4 (18 HSPs)
chr4 (436-607)||(38928540-38928712)
chr4 (436-607)||(37313427-37313597)
chr4 (436-601)||(24446949-24447111)
chr4 (436-533)||(12401247-12401344)
chr4 (436-546)||(19095699-19095809)
chr4 (436-501)||(12396337-12396402)
chr4 (436-572)||(18535202-18535334)
chr4 (436-534)||(13543811-13543908)
chr4 (500-601)||(18537841-18537945)
chr4 (485-546)||(33415891-33415952)
chr4 (554-607)||(33415849-33415904)
chr4 (436-490)||(18537974-18538026)
chr4 (275-313)||(18724540-18724578)
chr4 (436-474)||(33415978-33416016)
chr4 (275-327)||(18699883-18699935)
chr4 (275-313)||(18680044-18680082)
chr4 (285-330)||(18655923-18655968)
chr4 (485-533)||(12396285-12396333)
[»] chr5 (6 HSPs)
chr5 (436-601)||(16092574-16092741)
chr5 (436-578)||(31473006-31473147)
chr5 (485-601)||(25903894-25904012)
chr5 (436-501)||(1190086-1190151)
chr5 (436-502)||(36208301-36208367)
chr5 (492-546)||(1190021-1190075)
[»] chr3 (13 HSPs)
chr3 (436-578)||(3306521-3306663)
chr3 (436-601)||(6231172-6231338)
chr3 (436-569)||(47149320-47149454)
chr3 (436-601)||(51675123-51675290)
chr3 (436-571)||(3314407-3314542)
chr3 (438-578)||(890164-890303)
chr3 (427-601)||(53590905-53591084)
chr3 (436-498)||(54692046-54692108)
chr3 (501-601)||(880820-880922)
chr3 (438-490)||(880953-881004)
chr3 (436-470)||(23636730-23636764)
chr3 (485-607)||(31151120-31151244)
chr3 (532-576)||(7768395-7768439)
[»] chr2 (10 HSPs)
chr2 (436-607)||(38414392-38414564)
chr2 (436-546)||(45239387-45239497)
chr2 (485-607)||(28196406-28196530)
chr2 (436-546)||(31733171-31733281)
chr2 (436-501)||(17848814-17848879)
chr2 (494-599)||(17848893-17849000)
chr2 (436-490)||(28196337-28196391)
chr2 (439-501)||(17848161-17848222)
chr2 (554-607)||(17848283-17848338)
chr2 (485-546)||(17848235-17848296)
[»] chr7 (11 HSPs)
chr7 (436-546)||(4296342-4296452)
chr7 (436-569)||(42222891-42223022)
chr7 (436-607)||(20137471-20137665)
chr7 (436-534)||(9678867-9678964)
chr7 (436-490)||(9680545-9680598)
chr7 (436-501)||(11355013-11355077)
chr7 (508-601)||(9680638-9680733)
chr7 (436-490)||(24817852-24817906)
chr7 (554-607)||(11355130-11355185)
chr7 (485-546)||(11355082-11355143)
chr7 (436-469)||(24815587-24815620)
[»] chr8 (12 HSPs)
chr8 (436-601)||(36865334-36865502)
chr8 (436-542)||(40877984-40878089)
chr8 (436-601)||(35872748-35872910)
chr8 (485-607)||(5623100-5623224)
chr8 (436-501)||(30481028-30481093)
chr8 (554-607)||(40877938-40877993)
chr8 (448-490)||(5623240-5623282)
chr8 (431-470)||(21482121-21482160)
chr8 (436-490)||(13858966-13859020)
chr8 (440-474)||(30422850-30422884)
chr8 (438-474)||(2268832-2268868)
chr8 (454-490)||(14419695-14419731)
[»] chr1 (13 HSPs)
chr1 (436-546)||(50077080-50077190)
chr1 (436-607)||(50307911-50308074)
chr1 (436-546)||(12302919-12303029)
chr1 (485-601)||(17318684-17318804)
chr1 (436-501)||(40133661-40133726)
chr1 (485-601)||(50079193-50079310)
chr1 (436-501)||(17318615-17318680)
chr1 (436-490)||(50079326-50079380)
chr1 (500-601)||(11457847-11457950)
chr1 (501-593)||(40133745-40133840)
chr1 (436-471)||(14184109-14184144)
chr1 (436-468)||(17352800-17352832)
chr1 (438-490)||(31425480-31425532)
[»] chr6 (33 HSPs)
chr6 (126-210)||(27532650-27532734)
chr6 (485-607)||(32447678-32447803)
chr6 (436-501)||(3396098-3396163)
chr6 (437-546)||(3234134-3234242)
chr6 (128-188)||(26801547-26801607)
chr6 (436-578)||(26944929-26945069)
chr6 (125-208)||(27594093-27594177)
chr6 (436-490)||(3390135-3390189)
chr6 (436-490)||(15719426-15719480)
chr6 (8-62)||(27532539-27532593)
chr6 (8-62)||(27699219-27699273)
chr6 (275-335)||(26802100-26802160)
chr6 (144-216)||(27666961-27667033)
chr6 (8-60)||(27719469-27719521)
chr6 (275-327)||(31283992-31284044)
chr6 (485-601)||(3390205-3390323)
chr6 (275-331)||(28785956-28786016)
chr6 (436-487)||(32447821-32447872)
chr6 (362-408)||(27611778-27611824)
chr6 (290-331)||(27605255-27605296)
chr6 (280-331)||(26655628-26655680)
chr6 (280-331)||(26761599-26761651)
chr6 (275-331)||(27531664-27531720)
chr6 (275-323)||(27586230-27586278)
chr6 (275-330)||(27725324-27725380)
chr6 (23-62)||(27725704-27725743)
chr6 (275-312)||(27338549-27338586)
chr6 (275-312)||(27399289-27399326)
chr6 (276-311)||(27718860-27718895)
chr6 (504-546)||(3396187-3396229)
chr6 (20-62)||(28780798-28780840)
chr6 (23-60)||(26801671-26801708)
chr6 (276-309)||(27698973-27699006)
[»] scaffold0004 (2 HSPs)
scaffold0004 (436-499)||(79664-79726)
scaffold0004 (537-607)||(79715-79785)
[»] scaffold0349 (5 HSPs)
scaffold0349 (8-60)||(8891-8943)
scaffold0349 (275-330)||(3901-3957)
scaffold0349 (23-62)||(4280-4319)
scaffold0349 (276-311)||(8282-8317)
scaffold0349 (276-309)||(14834-14867)
[»] scaffold0045 (1 HSPs)
scaffold0045 (474-559)||(85045-85131)
[»] scaffold1254 (1 HSPs)
scaffold1254 (275-311)||(401-437)
[»] scaffold0419 (1 HSPs)
scaffold0419 (275-311)||(7192-7228)
[»] scaffold0277 (2 HSPs)
scaffold0277 (20-62)||(5603-5645)
scaffold0277 (20-62)||(14118-14160)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 1e-55; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 436 - 607
Target Start/End: Complemental strand, 38928712 - 38928540
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| |    
T  38928712 tgtgaaattgactcaaaattggagaaattga-gtttgctgaagctgtcaaaatcggagcacgatttcttggagcagaattggcactttcattcataaata 38928614  T
Q  536 ttcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaaacgtatttttgggcct 607  Q
     ||| |||||| | |||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||    
T  38928613 atcgaagcacgatctggcaaaatcggagtacgattttgcgcagattcagaaaaataaaacgtatttttgggcct 38928540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 436 - 607
Target Start/End: Complemental strand, 37313597 - 37313427
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcac-ttacattcataaaa 534  Q
    |||||||||||||||||||||||||||||||||||| |  ||||||||||||||| || |||| ||||||||| ||||||| ||| || ||||| |||||    
T  37313597 tgtgaaagtgactcaaaattggagaaattgaagtttac-gaagctgtcaaaatcggagtacga-tttttggagaagaattgacactttccattcgtaaaa 37313500  T
Q  535 attcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaaacgtatttttgggcct 607  Q
      |||||||||| | |||||||||||||||||||||||||| ||  ||||||||||||||||||| |||||||||    
T  37313499 --tcggagcacgatctggcaaaatcggagtacgattttgcgtagaatcataaaaataaaacgtatctttgggcct 37313427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 436 - 601
Target Start/End: Complemental strand, 24447111 - 24446949
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    |||||||| |||||||||||| | ||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||| ||||| ||||| ||||||    
T  24447111 tgtgaaagggactcaaaattgaataaattgaagtttgctgaagctgtcaaaattggagcacgatttttcggagcagaattgacactttcattcgtaaaaa 24447012  T
Q  536 ttcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaaacgtattttt 601  Q
     |||||||     ||||||||||||||| ||||||| ||||||    ||||||||||||| |||||||    
T  24447011 atcggagc-----atggcaaaatcggagcacgatttcgcgcagaagaataaaaataaaacatattttt 24446949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 436 - 533
Target Start/End: Complemental strand, 12401344 - 12401247
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaa 533  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| || |||||||||| ||||||||||||||||| ||||| ||||    
T  12401344 tgtgaaagttactcaaaattggagaaattcaagtttgctgaagctgtcaaaatcggagtacgattttttagagcagaattggcactttcattcgtaaa 12401247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 436 - 546
Target Start/End: Original strand, 19095699 - 19095809
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcac-ttacattcataaaa 534  Q
    ||||||||||| | ||||||||||||||||||||||||| ||| ||||||||||| |||||||  |||||||||||||||| ||| || ||||| |||||    
T  19095699 tgtgaaagtgatttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacga-cttttggagcagaattgacactttccattcgtaaaa 19095797  T
Q  535 attcggagcacg 546  Q
    | ||||||||||    
T  19095798 aatcggagcacg 19095809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 436 - 501
Target Start/End: Complemental strand, 12396402 - 12396337
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattt 501  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||||||    
T  12396402 tgtgaaagttactcaaaattggagaaattcaagtttgctgaagctgtcaaaatcggagcccgattt 12396337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 436 - 572
Target Start/End: Complemental strand, 18535334 - 18535202
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcactt-acattcataaaa 534  Q
    |||||||||||||||| |||| |||||||| ||||  || ||||||||||||||| || |||| ||||| ||| |||||||||||||  ||||| |||||    
T  18535334 tgtgaaagtgactcaatattgaagaaattggagtt--ctaaagctgtcaaaatcggagtacga-tttttagagtagaattggcacttcccattcgtaaaa 18535238  T
Q  535 attcggagcacggtatggcaaaatcggagtacgatttt 572  Q
    | |||||||||| | |||  |||| |||||||||||||    
T  18535237 agtcggagcacgatctgg--aaattggagtacgatttt 18535202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 436 - 534
Target Start/End: Original strand, 13543811 - 13543908
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaa 534  Q
    ||||||| ||||||||||||||||||||| |||| || | ||||||||||||||| ||||| ||||| ||  ||||||| ||||||| ||||| |||||    
T  13543811 tgtgaaaatgactcaaaattggagaaatt-aagtatgttgaagctgtcaaaatcggagcacaattttatgttgcagaataggcactttcattcgtaaaa 13543908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 500 - 601
Target Start/End: Complemental strand, 18537945 - 18537841
Alignment:
Q  500 tttttggagcagaattggcacttaca-ttcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgc--agtcataaaaataaaacgta 596  Q
    ||||| ||||||||||||||||| || ||| |||||| ||  |||||| | | |||||||||||||||||||||||||  |  |||||||||||||||||    
T  18537945 tttttagagcagaattggcacttccaattcgtaaaaaatcaaagcacgatctagcaaaatcggagtacgattttgcgcggaagcataaaaataaaacgta 18537846  T
Q  597 ttttt 601  Q
    |||||    
T  18537845 ttttt 18537841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 546
Target Start/End: Complemental strand, 33415952 - 33415891
Alignment:
Q  485 aaatcgaagcacgattttttggagcagaattggcacttacattcataaaaattcggagcacg 546  Q
    |||||| |||||||||||||||||||||||||||||||  |||| |||||| ||||||||||    
T  33415952 aaatcggagcacgattttttggagcagaattggcactttaattcgtaaaaaatcggagcacg 33415891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 554 - 607
Target Start/End: Complemental strand, 33415904 - 33415849
Alignment:
Q  554 aaaatcggagtacgattttgcgcag--tcataaaaataaaacgtatttttgggcct 607  Q
    |||||||||| ||||||||||||||  ||| |||||||||||||||||||||||||    
T  33415904 aaaatcggagcacgattttgcgcagagtcagaaaaataaaacgtatttttgggcct 33415849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 18538026 - 18537974
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcg 490  Q
    ||||||||||||||||||||| |||||||||||||  || |||||||||||||||    
T  18538026 tgtgaaagtgactcaaaattgaagaaattgaagtt--ctgaagctgtcaaaatcg 18537974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 18724540 - 18724578
Alignment:
Q  275 cttcctggccacttcctatagccgtgtggaccaatcaca 313  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  18724540 cttcctgaccacttcctatagccgtgtggaccaatcaca 18724578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 474
Target Start/End: Complemental strand, 33416016 - 33415978
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgct 474  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  33416016 tgtgaaagtgactcaaaattggagaaattgaaatttgct 33415978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 18699883 - 18699935
Alignment:
Q  275 cttcctggccacttcctatagccgtgtggaccaatcacatactaaatatcatt 327  Q
    ||||||| | ||||||||||||||||||||||||||||| | |||||| ||||    
T  18699883 cttcctgactacttcctatagccgtgtggaccaatcacacattaaataacatt 18699935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 18680044 - 18680082
Alignment:
Q  275 cttcctggccacttcctatagccgtgtggaccaatcaca 313  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  18680044 cttcctgactacttcctatagccgtgtggaccaatcaca 18680082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 18655923 - 18655968
Alignment:
Q  285 acttcctatagccgtgtggaccaatcacatactaaatatcattgta 330  Q
    |||| |||||||||||||||||||||||| | |||||| |||||||    
T  18655923 actttctatagccgtgtggaccaatcacacagtaaataacattgta 18655968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 12396333 - 12396285
Alignment:
Q  485 aaatcgaagcacgattttttggagcagaattggcacttacattcataaa 533  Q
    |||||| || |||||||||| ||||||||||||||||| ||||| ||||    
T  12396333 aaatcggagtacgattttttagagcagaattggcactttcattcgtaaa 12396285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 436 - 601
Target Start/End: Complemental strand, 16092741 - 16092574
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||||| ||||| ||||||    
T  16092741 tgtgaaactgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcacgatttttcgaagcagaattggcactttcattcgtaaaaa 16092642  T
Q  536 ttcggagcacggtatggcaaaatcggagtacgattttgcgc--agtcataaaaataaaacgtattttt 601  Q
     |||||||||| | |||||||||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  16092641 atcggagcacgatctggcaaaatcggagtacgatttggcgcagagtcataaaaataaaacgtagtttt 16092574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 436 - 578
Target Start/End: Complemental strand, 31473147 - 31473006
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    ||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||| | ||||| ||||||    
T  31473147 tgtgaaagtgatttaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcacga-tttatggagcagaattggcacattcattcttaaaaa 31473049  T
Q  536 ttcggagcacggtatggcaaaatcggagtacgattttgcgcag 578  Q
     |||||||||| | ||||||| |||||| ||||||| ||||||    
T  31473048 atcggagcacgatctggcaaagtcggagcacgatttcgcgcag 31473006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 485 - 601
Target Start/End: Original strand, 25903894 - 25904012
Alignment:
Q  485 aaatcgaagcacgattttttggagcagaattggcacttacattcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcat 582  Q
    |||||| |||| ||||||| |||||||||||| |||||  ||||||||||| |||||||||| | |||||||||||||| ||||||| ||||||    ||    
T  25903894 aaatcggagcatgatttttcggagcagaattgacacttttattcataaaaaatcggagcacgatctggcaaaatcggagcacgatttcgcgcagaagaat 25903993  T
Q  583 aaaaataaaacgtattttt 601  Q
    |||||||||||||||||||    
T  25903994 aaaaataaaacgtattttt 25904012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 436 - 501
Target Start/End: Complemental strand, 1190151 - 1190086
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattt 501  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||    
T  1190151 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaattggagcacgattt 1190086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 36208301 - 36208367
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgatttt 502  Q
    ||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |||||||||||    
T  36208301 tgtgaaagtgacttaaaattggtgaaattgaagtttgctgaagctgtcaaaatcggagcacgatttt 36208367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 492 - 546
Target Start/End: Complemental strand, 1190075 - 1190021
Alignment:
Q  492 agcacgattttttggagcagaattggcacttacattcataaaaattcggagcacg 546  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  1190075 agcacgattttttggagcagaattggcactttcattcgtaaaaaatcggagcacg 1190021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 436 - 578
Target Start/End: Original strand, 3306521 - 3306663
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||| ||||||    
T  3306521 tgtgaaagtgactcaaaattggagaaattgaagtttgctaaagctgtcaaaatcggagcacgattttctggagtagaattggcactttcattcgtaaaaa 3306620  T
Q  536 ttcggagcacggtatggcaaaatcggagtacgattttgcgcag 578  Q
     |||||||||| | |||||||||||||| ||||||| ||||||    
T  3306621 atcggagcacgatctggcaaaatcggagcacgatttcgcgcag 3306663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 436 - 601
Target Start/End: Original strand, 6231172 - 6231338
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |  |||||||| ||||||| ||||| ||||| ||||||    
T  6231172 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcac-aacttttggagtagaattgacactttcattcgtaaaaa 6231270  T
Q  536 ttcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaaacgtattttt 601  Q
     |||||||||| | ||||||||| |||| ||||||| ||||||    |||||||||||||||||||||    
T  6231271 atcggagcacgatctggcaaaattggagcacgatttcgcgcagaagaataaaaataaaacgtattttt 6231338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 436 - 569
Target Start/End: Complemental strand, 47149454 - 47149320
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcat-aaaa 534  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| | ||||    
T  47149454 tgtgaaagtgactcaaaattggagaaattgaagtttgatgaagctgtcaaaatcggagcacgattttttggagcagaattgacactttcattcgtaaaaa 47149355  T
Q  535 attcggagcacggtatggcaaaatcggagtacgat 569  Q
    | |||||||||| | ||| |||||||||| |||||    
T  47149354 aatcggagcacgatctggtaaaatcggagcacgat 47149320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 436 - 601
Target Start/End: Complemental strand, 51675290 - 51675123
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    ||||||||||||||||||||||||||||||| |||| || ||||||||||||||| ||||||||||| ||||||||||||| |||||  |||| ||||||    
T  51675290 tgtgaaagtgactcaaaattggagaaattgatgttttctgaagctgtcaaaatcggagcacgattttctggagcagaattgtcactttgattcgtaaaaa 51675191  T
Q  536 ttcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaaacgtattttt 601  Q
     |||||||||| | |||||||||| ||| |||||||  || ||    |||||||||||||||||||||    
T  51675190 atcggagcacgatctggcaaaatcagagcacgatttcacgtagaagaataaaaataaaacgtattttt 51675123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 436 - 571
Target Start/End: Original strand, 3314407 - 3314542
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    ||||||||||| ||||||||| ||||||||||||||| | ||||||||||||| | ||||||||||| | ||||||||||| ||||| ||||| ||||||    
T  3314407 tgtgaaagtgattcaaaattgaagaaattgaagtttgttgaagctgtcaaaataggagcacgattttctagagcagaattgacactttcattcgtaaaaa 3314506  T
Q  536 ttcggagcacggtatggcaaaatcggagtacgattt 571  Q
     |||||||||| | |||||||||||||| |||||||    
T  3314507 atcggagcacgatctggcaaaatcggagcacgattt 3314542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 438 - 578
Target Start/End: Complemental strand, 890303 - 890164
Alignment:
Q  438 tgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaatt 537  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||| | ||| | ||||||||| ||||||||||||| ||||| |||||| |    
T  890303 tgaaagtgactcaaaattggagaaattgaagtttgttgaagctgtcaaaatcggaccac-aatttttggagtagaattggcactttcattcgtaaaaaat 890205  T
Q  538 cggagcacggtatggcaaaatcggagtacgattttgcgcag 578  Q
    | ||||||| ||||| ||||||  || ||||||||||||||    
T  890204 cagagcacgatatggaaaaatcatagcacgattttgcgcag 890164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 427 - 601
Target Start/End: Original strand, 53590905 - 53591084
Alignment:
Q  427 agatattactgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacga---ttttttggagcagaattggcactta 523  Q
    |||||||  ||||||| | ||||||||||| ||||||||||||||||| ||||||||||||||| || ||||   |||||||||||||||||| |||||     
T  53590905 agatattgttgtgaaaataactcaaaattgaagaaattgaagtttgctgaagctgtcaaaatcggagtacgatttttttttggagcagaattgacacttt 53591004  T
Q  524 cattcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaaacgtattttt 601  Q
    ||||| |||||  |||||| | | | ||| |||||||||| | ||||| ||||||    |||||||||||||||||||||    
T  53591005 cattcgtaaaacatcggaggatgatctggaaaaatcggagcatgatttcgcgcagaagaataaaaataaaacgtattttt 53591084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 436 - 498
Target Start/End: Complemental strand, 54692108 - 54692046
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacga 498  Q
    ||||||||||||| |||||||||||||||||||||||||  || |||||||||||||||||||    
T  54692108 tgtgaaagtgacttaaaattggagaaattgaagtttgctggagttgtcaaaatcgaagcacga 54692046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 501 - 601
Target Start/End: Complemental strand, 880922 - 880820
Alignment:
Q  501 ttttggagcagaattggcacttacattcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaaacgtatt 598  Q
    |||||||| ||||||| ||||| ||||| |||||| |||||| ||| | |||||||||||| | ||||||| ||||||    ||||||||||||||||||    
T  880922 ttttggagtagaattgacactttcattcgtaaaaaatcggagtacgatctggcaaaatcggcgcacgatttcgcgcagaagaataaaaataaaacgtatt 880823  T
Q  599 ttt 601  Q
    |||    
T  880822 ttt 880820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 490
Target Start/End: Complemental strand, 881004 - 880953
Alignment:
Q  438 tgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcg 490  Q
    ||||||||||||||||| |||||| |||||||||| | |||||||||||||||    
T  881004 tgaaagtgactcaaaat-ggagaagttgaagtttgttgaagctgtcaaaatcg 880953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 23636730 - 23636764
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtt 470  Q
    |||||||||||||||||||||||||||||| ||||    
T  23636730 tgtgaaagtgactcaaaattggagaaattggagtt 23636764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 607
Target Start/End: Original strand, 31151120 - 31151244
Alignment:
Q  485 aaatcgaagcacgattttttggagcagaattggcactt-acattcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgcag--tca 581  Q
    |||||| |||||||||||| | ||||||||||||||||  ||||| |||||  |||||||| | | ||||||||| |||| || |||| ||||||   ||    
T  31151120 aaatcggagcacgatttttag-agcagaattggcacttcccattcgtaaaatatcggagcatgatctggcaaaattggagcacaatttcgcgcagaagca 31151218  T
Q  582 taaaaataaaacgtatttttgggcct 607  Q
    |||||||||||| | ||| |||||||    
T  31151219 taaaaataaaacatttttatgggcct 31151244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 576
Target Start/End: Original strand, 7768395 - 7768439
Alignment:
Q  532 aaaattcggagcacggtatggcaaaatcggagtacgattttgcgc 576  Q
    |||| ||| |||| ||||||||||||||| |||||||||||||||    
T  7768395 aaaaatcgtagcatggtatggcaaaatcgtagtacgattttgcgc 7768439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 5e-42; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 436 - 607
Target Start/End: Complemental strand, 38414564 - 38414392
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcac-ttacattcataaaa 534  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || |||| |||||||| |||||||||||| || ||||| |||||    
T  38414564 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaattggagtacga-tttttggaccagaattggcactttccattcgtaaaa 38414466  T
Q  535 attcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaaacgtatttttgggcct 607  Q
    | |||||||| | | ||||||||||||||||||| |||||||||  ||||||||||||| | |||||||||||||    
T  38414465 aatcggagcatgatctggcaaaatcggagtacga-tttgcgcagaatcataaaaataaatcatatttttgggcct 38414392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 436 - 546
Target Start/End: Complemental strand, 45239497 - 45239387
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||||| ||||||    
T  45239497 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcacgatttttcggagcagaattggcactttcattcgtaaaaa 45239398  T
Q  536 ttcggagcacg 546  Q
     ||||||||||    
T  45239397 atcggagcacg 45239387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 485 - 607
Target Start/End: Original strand, 28196406 - 28196530
Alignment:
Q  485 aaatcgaagcacgattttttggagcagaattggcacttacattcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgc--agtcat 582  Q
    ||||||||||| | ||||||| || ||||||| ||||| ||||  |||||| |||||||| | | |||||||||||||||||||||||||||  ||||||    
T  28196406 aaatcgaagcatggttttttgcagaagaattgacactttcattagtaaaaaatcggagcatgatctggcaaaatcggagtacgattttgcgcagagtcat 28196505  T
Q  583 aaaaataaaacgtatttttgggcct 607  Q
    |||||||||||||||||||||||||    
T  28196506 aaaaataaaacgtatttttgggcct 28196530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 436 - 546
Target Start/End: Complemental strand, 31733281 - 31733171
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcac-ttacattcataaaa 534  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||| | || |||| |||||| |||||||||| ||| || ||||| |||||    
T  31733281 tgtgaaagtgactcaaaattggagaaattgaagtttggtgaagctgtcaaaattggagtacga-tttttgaagcagaattgacactttccattcgtaaaa 31733183  T
Q  535 attcggagcacg 546  Q
    | ||||||||||    
T  31733182 aatcggagcacg 31733171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 436 - 501
Target Start/End: Original strand, 17848814 - 17848879
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattt 501  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||    
T  17848814 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaaactgtcaaaatcgaagcccgattt 17848879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 494 - 599
Target Start/End: Original strand, 17848893 - 17849000
Alignment:
Q  494 cacgattttttggagcagaattggcacttacattcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaa 591  Q
    ||||||||||||||| ||||||| ||||| ||||| |||||| || ||||||||| ||| |||||||||| ||||||| ||||||    |||||||||||    
T  17848893 cacgattttttggagaagaattgacactttcattcgtaaaaaatctgagcacggtctggaaaaatcggagcacgatttcgcgcagaagaataaaaataaa 17848992  T
Q  592 acgtattt 599  Q
    ||||||||    
T  17848993 acgtattt 17849000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 28196337 - 28196391
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcg 490  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  28196337 tgtgaaagtgactcaaaaatggagaaattgaagtttgctgaagctgtcaaaatcg 28196391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 439 - 501
Target Start/End: Original strand, 17848161 - 17848222
Alignment:
Q  439 gaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattt 501  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||||||    
T  17848161 gaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaatcggagcccgattt 17848222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 554 - 607
Target Start/End: Original strand, 17848283 - 17848338
Alignment:
Q  554 aaaatcggagtacgattttgcgcag--tcataaaaataaaacgtatttttgggcct 607  Q
    |||||||||| ||||||||||||||  ||| |||||||||||||||||||||||||    
T  17848283 aaaatcggagcacgattttgcgcagagtcagaaaaataaaacgtatttttgggcct 17848338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 485 - 546
Target Start/End: Original strand, 17848235 - 17848296
Alignment:
Q  485 aaatcgaagcacgattttttggagcagaattggcacttacattcataaaaattcggagcacg 546  Q
    |||||| ||||||||||| ||  ||||||||||||||| ||||| |||||| ||||||||||    
T  17848235 aaatcggagcacgattttatgttgcagaattggcactttcattcgtaaaaaatcggagcacg 17848296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 436 - 546
Target Start/End: Complemental strand, 4296452 - 4296342
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||  |||||    
T  4296452 tgtgaaagtgactcaaaattggagaaattgaagcttgctgaagctgtcaaaatcggagcacgattttttggagcagaattgccactttcattcgaaaaaa 4296353  T
Q  536 ttcggagcacg 546  Q
     ||||||||||    
T  4296352 atcggagcacg 4296342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 436 - 569
Target Start/End: Original strand, 42222891 - 42223022
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||| ||||| ||||||    
T  42222891 tgtgaaagtgacttaaaattggagaaattga-gtttgctgaagctgtcaaaatcggagcacgatttt-tggagcagaattgacactttcattcgtaaaaa 42222988  T
Q  536 ttcggagcacggtatggcaaaatcggagtacgat 569  Q
     || ||||||| | ||||||||||||||||||||    
T  42222989 atcagagcacgatctggcaaaatcggagtacgat 42223022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 436 - 607
Target Start/End: Complemental strand, 20137665 - 20137471
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattt--------------------tttggagcagaatt 515  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||                    || |||||||||||    
T  20137665 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgttataatcggagcacgatttgaaaaaatcggagtacgattttcggagcagaatt 20137566  T
Q  516 ggcacttac-attcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgc--agtcataaaaataaaacgtatttttgggcct 607  Q
    ||||||| | |||| |||||| ||| |||||| | |||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  20137565 ggcactttccattcgtaaaaaatcgaagcacgatctggcaaaatcggagtacgattttgcgcaaaatcataaaaataaaacgtatttttgggcct 20137471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 436 - 534
Target Start/End: Original strand, 9678867 - 9678964
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaa 534  Q
    ||||||| ||||||||||||||||||||| |||| || | ||||||||||||||| ||||| ||||| ||  ||||||| ||||||| ||||| |||||    
T  9678867 tgtgaaaatgactcaaaattggagaaatt-aagtatgttgaagctgtcaaaatcggagcacaattttatgttgcagaataggcactttcattcgtaaaa 9678964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 9680545 - 9680598
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcg 490  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  9680545 tgtgaaagtgactcaaaattggagaaatt-aagtttgctgaagctgtcaaaatcg 9680598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 436 - 501
Target Start/End: Original strand, 11355013 - 11355077
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattt 501  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||| ||||||    
T  11355013 tgtgaaagtgactcaaaattgaagaaattg-agtttgctgaagctgtcaaaatcggagcccgattt 11355077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 508 - 601
Target Start/End: Original strand, 9680638 - 9680733
Alignment:
Q  508 gcagaattggcacttacattcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaaacgtattttt 601  Q
    ||||||| ||||||| |||||  ||||| | |||||||| | || ||||||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  9680638 gcagaatgggcactttcattcgaaaaaaattggagcacgatctgacaaaatcggagtacgattttgcgcagattcagaaaaataaaatgtattttt 9680733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 24817906 - 24817852
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcg 490  Q
    ||||||||||||||||||||||||||||||||||||| | ||  |||||||||||    
T  24817906 tgtgaaagtgactcaaaattggagaaattgaagtttgttgaatttgtcaaaatcg 24817852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 554 - 607
Target Start/End: Original strand, 11355130 - 11355185
Alignment:
Q  554 aaaatcggagtacgattttgcgcag--tcataaaaataaaacgtatttttgggcct 607  Q
    |||||||||| ||||||||||||||  ||| |||||||||||||||||||||||||    
T  11355130 aaaatcggagcacgattttgcgcagagtcagaaaaataaaacgtatttttgggcct 11355185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 485 - 546
Target Start/End: Original strand, 11355082 - 11355143
Alignment:
Q  485 aaatcgaagcacgattttttggagcagaattggcacttacattcataaaaattcggagcacg 546  Q
    |||||||||||||||||| ||  ||| ||||||||||| ||||| |||||| ||||||||||    
T  11355082 aaatcgaagcacgattttatgttgcataattggcactttcattcgtaaaaaatcggagcacg 11355143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 24815620 - 24815587
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagt 469  Q
    ||||||||| ||||||||||||||||||||||||    
T  24815620 tgtgaaagtcactcaaaattggagaaattgaagt 24815587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 436 - 601
Target Start/End: Original strand, 36865334 - 36865502
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaag-tttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcac-ttacattcataaa 533  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||| || |||| ||||||||||||||||||||| || ||||| ||||    
T  36865334 tgtgaaagtgacttaaaattggagaaattgaagttttgctgaagttgtcaaaatcggagtacga-tttttggagcagaattggcactttccattcgtaaa 36865432  T
Q  534 aattcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaaacgtattttt 601  Q
    || |||||||||||| ||||||||| |||| ||||||| ||| ||    |||||||||||||||||||||    
T  36865433 aaatcggagcacggtctggcaaaattggagcacgatttcgcgaagaagaataaaaataaaacgtattttt 36865502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 436 - 542
Target Start/End: Complemental strand, 40878089 - 40877984
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||    
T  40878089 tgtgaaagtgactcaaaattggagaaattga-gtttgctgaagctgtcaaaatcggagcacgattttttgaagcagaattggcactttcattcgtaaaaa 40877991  T
Q  536 ttcggag 542  Q
     ||||||    
T  40877990 atcggag 40877984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 436 - 601
Target Start/End: Complemental strand, 35872910 - 35872748
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    |||||||| |||||||||||| | ||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||| ||||| ||||| ||||||    
T  35872910 tgtgaaagggactcaaaattgaataaattgaagtttgctgaagctgtcaaaattggagcacgatttttcggagcagaattgacactttcattcgtaaaaa 35872811  T
Q  536 ttcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaaacgtattttt 601  Q
     |||||||     ||||||||||||||| ||||||| ||||||    ||||||||||||| |||||||    
T  35872810 atcggagc-----atggcaaaatcggagcacgatttcgcgcagaagaataaaaataaaacatattttt 35872748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 485 - 607
Target Start/End: Complemental strand, 5623224 - 5623100
Alignment:
Q  485 aaatcgaagcacgattttttggagcagaattggcacttacattcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgc--agtcat 582  Q
    |||||| |||||||||| |||||||||||||||||||| ||||| || ||| |||||||||| | |||||||||||||||||||||||||||  |||||     
T  5623224 aaatcggagcacgatttattggagcagaattggcactttcattcgtacaaaatcggagcacgatctggcaaaatcggagtacgattttgcgcagagtcag 5623125  T
Q  583 aaaaataaaacgtatttttgggcct 607  Q
     |||||||||| |||||||||||||    
T  5623124 caaaataaaacatatttttgggcct 5623100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 436 - 501
Target Start/End: Complemental strand, 30481093 - 30481028
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattt 501  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  30481093 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgattt 30481028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 554 - 607
Target Start/End: Complemental strand, 40877993 - 40877938
Alignment:
Q  554 aaaatcggagtacgattttgcgc--agtcataaaaataaaacgtatttttgggcct 607  Q
    |||||||||||||||||||||||  ||||| | |||||||||||||||||||||||    
T  40877993 aaaatcggagtacgattttgcgcagagtcagataaataaaacgtatttttgggcct 40877938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 490
Target Start/End: Complemental strand, 5623282 - 5623240
Alignment:
Q  448 tcaaaattggagaaattgaagtttgcttaagctgtcaaaatcg 490  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  5623282 tcaaaattggagaaattaaagtttgctgaagctgtcaaaatcg 5623240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 470
Target Start/End: Original strand, 21482121 - 21482160
Alignment:
Q  431 attactgtgaaagtgactcaaaattggagaaattgaagtt 470  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  21482121 attattgtgaaagtgactcaaaattgaagaaattgaagtt 21482160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 13859020 - 13858966
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcg 490  Q
    ||||||| ||||| ||||||||||||||| ||||||| | || ||||||||||||    
T  13859020 tgtgaaaatgactaaaaattggagaaattaaagtttgttgaatctgtcaaaatcg 13858966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 474
Target Start/End: Original strand, 30422850 - 30422884
Alignment:
Q  440 aaagtgactcaaaattggagaaattgaagtttgct 474  Q
    ||||||||||||||||| |||||||||||||||||    
T  30422850 aaagtgactcaaaattgaagaaattgaagtttgct 30422884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 438 - 474
Target Start/End: Complemental strand, 2268868 - 2268832
Alignment:
Q  438 tgaaagtgactcaaaattggagaaattgaagtttgct 474  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  2268868 tgaaagtgactcaaaattgaagaaattaaagtttgct 2268832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 14419731 - 14419695
Alignment:
Q  454 ttggagaaattgaagtttgcttaagctgtcaaaatcg 490  Q
    ||||||||||||||||||||| || ||||||||||||    
T  14419731 ttggagaaattgaagtttgctgaatctgtcaaaatcg 14419695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 436 - 546
Target Start/End: Complemental strand, 50077190 - 50077080
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    |||||||||||||||||||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||||  |||| ||||||    
T  50077190 tgtgaaagtgactcaaaattagagaaattgaagtttgttgaagctgtcaaaatcggagcacgattttttggagcagatttggcactttaattcgtaaaaa 50077091  T
Q  536 ttcggagcacg 546  Q
     ||||||||||    
T  50077090 atcggagcacg 50077080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 436 - 607
Target Start/End: Complemental strand, 50308074 - 50307911
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||| ||||        ||||| ||||||    
T  50308074 tgtgaaagtgactcaaaattggagaaattga-gtttgctgaagctgtcaaaattggagcacgattttttggagcataatt--------cattcgtaaaaa 50307984  T
Q  536 ttcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaaacgtatttttgggcct 607  Q
     ||| |||||| | |||||||||| ||||||||||||||||||  ||| ||||||||||| | |||||||||||    
T  50307983 atcgaagcacgatctggcaaaatcagagtacgattttgcgcagattcagaaaaataaaac-tttttttgggcct 50307911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 436 - 546
Target Start/End: Complemental strand, 12303029 - 12302919
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaa 535  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| |||||||| || ||||||||||| | ||||||||||  || || ||||  ||||||    
T  12303029 tgtgaaagtgattcaaaattggagaaattgaagtttgctaaagttgtcaaaagcggagcacgattttctagagcagaattaacattttcatttgtaaaaa 12302930  T
Q  536 ttcggagcacg 546  Q
     ||||||||||    
T  12302929 atcggagcacg 12302919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 485 - 601
Target Start/End: Original strand, 17318684 - 17318804
Alignment:
Q  485 aaatcgaagcacgattttttggagcagaattggcacttac-attcataaaaattcggagcacggtatggcaaaatcggagtacga-ttttgcgc--agtc 580  Q
    |||||||||||| |||||||||| |||||||| || || | |||| |||||| |||||||||| | ||||||||||||||| ||| ||||||||  ||||    
T  17318684 aaatcgaagcacaattttttggaccagaattgacagtttccattcgtaaaaaatcggagcacgatctggcaaaatcggagtgcgatttttgcgcagagtc 17318783  T
Q  581 ataaaaataaaacgtattttt 601  Q
    |||||||||||||||||||||    
T  17318784 ataaaaataaaacgtattttt 17318804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 436 - 501
Target Start/End: Original strand, 40133661 - 40133726
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattt 501  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||    
T  40133661 tgtgaaagtgactcaaaattagagaaattgaagtttgctgaagctgtcaaaatcggagcacgattt 40133726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 485 - 601
Target Start/End: Complemental strand, 50079310 - 50079193
Alignment:
Q  485 aaatcgaagcacgattttttggagcagaattggcacttacattcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgc--agtcat 582  Q
    |||||| |||||||||||| |||||||| ||||||||| ||||| || ||| |||||||||| | |||||||||||||| ||||||| ||||  |   ||    
T  50079310 aaatcggagcacgattttt-ggagcagatttggcactttcattcgtagaaaatcggagcacgatctggcaaaatcggagcacgatttcgcgctgaagaat 50079212  T
Q  583 aaaaataaaacgtattttt 601  Q
    |||||||||||||||||||    
T  50079211 aaaaataaaacgtattttt 50079193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 436 - 501
Target Start/End: Original strand, 17318615 - 17318680
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattt 501  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||| |||| |||| ||||||||||    
T  17318615 tgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatatcggagcacgattt 17318680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 50079380 - 50079326
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcg 490  Q
    |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||    
T  50079380 tgtgaaagtgactccaaattgaagaaattgaagtttgctgaagctgtcaaaatcg 50079326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 500 - 601
Target Start/End: Complemental strand, 11457950 - 11457847
Alignment:
Q  500 tttttggagcagaattggcacttacattcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcataaaaataaaacgtat 597  Q
    ||||||||||||||||| ||||| ||||  |||||| | |||||||| | | |||||||||||| ||||||| ||||||    |||||||||||||||||    
T  11457950 tttttggagcagaattgacactttcatttgtaaaaaattggagcacgatctagcaaaatcggagcacgatttcgcgcagaagaataaaaataaaacgtat 11457851  T
Q  598 tttt 601  Q
    ||||    
T  11457850 tttt 11457847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 501 - 593
Target Start/End: Original strand, 40133745 - 40133840
Alignment:
Q  501 ttttggagcagaattggcacttac-attcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgc--agtcataaaaataaaac 593  Q
    |||||||||| ||||||||||| | |||  |||||| |||||||||| | |||||||||| ||||||||||||||||  | |||||||||||||||    
T  40133745 ttttggagcataattggcactttccattggtaaaaaatcggagcacgatctggcaaaatcagagtacgattttgcgcataatcataaaaataaaac 40133840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 471
Target Start/End: Complemental strand, 14184144 - 14184109
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagttt 471  Q
    ||||||||||||| ||||||||||||||||||||||    
T  14184144 tgtgaaagtgacttaaaattggagaaattgaagttt 14184109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 468
Target Start/End: Original strand, 17352800 - 17352832
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaag 468  Q
    ||||||||||||||||||||| |||||||||||    
T  17352800 tgtgaaagtgactcaaaattgaagaaattgaag 17352832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 438 - 490
Target Start/End: Complemental strand, 31425532 - 31425480
Alignment:
Q  438 tgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcg 490  Q
    ||||||||||||||| ||||||||||||| ||||   ||| ||||||||||||    
T  31425532 tgaaagtgactcaaatttggagaaattgaggtttctgtaatctgtcaaaatcg 31425480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 27532650 - 27532734
Alignment:
Q  126 tatgtctccttaaatttggtagaatgctataacctataagcagcccatctagttgaatgctaaaactaaagcatcctttttaaca 210  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  27532650 tatgtctccttaaattgggtagaatgctataacctataagtagcccatctagttgaatgctaaaactaaagcatcatttttaaca 27532734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 485 - 607
Target Start/End: Complemental strand, 32447803 - 32447678
Alignment:
Q  485 aaatcgaagcacgattttttggagcag-aattggcacttacattcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgc--agtca 581  Q
    |||||| |||| ||||||||||||||| ||||||||||| ||||| |||||| |||||||||| | ||| ||||| |||||||||||||||||  |||||    
T  32447803 aaatcggagcatgattttttggagcaggaattggcactttcattcgtaaaaaatcggagcacgatctggaaaaattggagtacgattttgcgcagagtca 32447704  T
Q  582 taaaaataaaacgtatttttgggcct 607  Q
    ||||||||||||||||||||||||||    
T  32447703 taaaaataaaacgtatttttgggcct 32447678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 436 - 501
Target Start/End: Original strand, 3396098 - 3396163
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattt 501  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  3396098 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcgaagcccgattt 3396163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 437 - 546
Target Start/End: Complemental strand, 3234242 - 3234134
Alignment:
Q  437 gtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcacttacattcataaaaat 536  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||  ||||||| ||  | ||||||| ||||| ||||| ||||||     
T  3234242 gtgaaagtgactcaaaattggagaaattga-gtttgctgaagctgtcaaaatcggagtccgattttatgttgtagaattgacactttcattcgtaaaaaa 3234144  T
Q  537 tcggagcacg 546  Q
    ||||||||||    
T  3234143 tcggagcacg 3234134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 26801607 - 26801547
Alignment:
Q  128 tgtctccttaaatttggtagaatgctataacctataagcagcccatctagttgaatgctaa 188  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||| ||||    
T  26801607 tgtctccttaaattgggtagaatgctataacctataaggagcctatctagttgaatcctaa 26801547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 436 - 578
Target Start/End: Original strand, 26944929 - 26945069
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgattttttggagcagaattggcactt-acattcataaaa 534  Q
    ||||||||||||||||||||| |||||||| ||||  || | ||||||||||||| || ||||||||||  || |||||||| ||||  ||||| |||||    
T  26944929 tgtgaaagtgactcaaaattgaagaaattggagtt--ctgatgctgtcaaaatcggagtacgatttttt-tagaagaattggaacttcccattcgtaaaa 26945025  T
Q  535 attcggagcacggtatggcaaaatcggagtacgattttgcgcag 578  Q
    | |||||| ||| | | ||||||||| ||||| |||||||||||    
T  26945026 aatcggagtacgatctcgcaaaatcgaagtacaattttgcgcag 26945069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 27594093 - 27594177
Alignment:
Q  125 ttatgtctcctta-aatttggtagaatgctataacctataagcagcccatctagttgaatgctaaaactaaagcatcctttttaa 208  Q
    ||||||||||||  |||| ||||||||||| ||||||||||| |||| ||||||||||||||| |||||| |||||| |||||||    
T  27594093 ttatgtctccttgtaattgggtagaatgctgtaacctataagtagccaatctagttgaatgctgaaactatagcatcatttttaa 27594177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 3390135 - 3390189
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcg 490  Q
    |||||||||||||||||||||||||||||||||||| |  |||||||||||||||    
T  3390135 tgtgaaagtgactcaaaattggagaaattgaagtttacagaagctgtcaaaatcg 3390189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 15719426 - 15719480
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcg 490  Q
    ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||    
T  15719426 tgtgaaagtgactcaaaattggagaaattaaagtttgctgaatctgtcaaaatcg 15719480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 27532539 - 27532593
Alignment:
Q  8 cccatttcgtatttctgtaaagtaatcatcacatccttcttccatgtaatttctt 62  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||||||||||    
T  27532539 cccatttcttatttctgtaaagtaaccataacatccttcttccatgtaatttctt 27532593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 27699219 - 27699273
Alignment:
Q  8 cccatttcgtatttctgtaaagtaatcatcacatccttcttccatgtaatttctt 62  Q
    |||||||| ||| |||||||||||| |||||||||||||||||||||||||||||    
T  27699219 cccatttcatatgtctgtaaagtaaccatcacatccttcttccatgtaatttctt 27699273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 26802160 - 26802100
Alignment:
Q  275 cttcctggccacttcctatagccgtgtggaccaatcacatactaaatatcattgtacaaga 335  Q
    ||||||||||||||||||||||||||||||||||||| | | ||||||| | |||||||||    
T  26802160 cttcctggccacttcctatagccgtgtggaccaatcatacaataaatataagtgtacaaga 26802100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 27666961 - 27667033
Alignment:
Q  144 gtagaatgctataacctataagcagcccatctagttgaatgctaaaactaaagcatcctttttaacaaacttt 216  Q
    |||||||| | |||||| |||  ||||||||||||||||||||||||| |||||||| ||||||||| |||||    
T  27666961 gtagaatgttttaacctttaattagcccatctagttgaatgctaaaaccaaagcatcatttttaacatacttt 27667033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 27719469 - 27719521
Alignment:
Q  8 cccatttcgtatttctgtaaagtaatcatcacatccttcttccatgtaatttc 60  Q
    |||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  27719469 cccatttcatatgtctgtaaagtaaccatcacatccttcttccatgtaatttc 27719521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 31284044 - 31283992
Alignment:
Q  275 cttcctggccacttcctatagccgtgtggaccaatcacatactaaatatcatt 327  Q
    |||||||||||||| |||||||||||||||||||||||| | |||||||||||    
T  31284044 cttcctggccacttgctatagccgtgtggaccaatcacacagtaaatatcatt 31283992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 601
Target Start/End: Original strand, 3390205 - 3390323
Alignment:
Q  485 aaatcgaagcacgattttttggagcagaattggcacttacattcataaaaattcggagcacggtatggcaaaatcggagtacgattttgcgcag--tcat 582  Q
    |||||| |||| |||||| | ||||||||||||||||| || || |||||| | |||||||| | |||||||||||||| || |||| ||||||    ||    
T  3390205 aaatcggagcatgattttctagagcagaattggcactttcaatcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaat 3390304  T
Q  583 aaaaataaaacgtattttt 601  Q
    ||| |||||||||||||||    
T  3390305 aaatataaaacgtattttt 3390323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 28786016 - 28785956
Alignment:
Q  275 cttcctggccacttcctatagccgtgtggaccaatcac----atactaaatatcattgtac 331  Q
    |||||||||||||||||||||||||||||||||||||     |||||||||||||||||||    
T  28786016 cttcctggccacttcctatagccgtgtggaccaatcatgtatatactaaatatcattgtac 28785956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 487
Target Start/End: Complemental strand, 32447872 - 32447821
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaa 487  Q
    ||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  32447872 tgtgaaagtgactcaaaattggagaaatttaagtttgttgaagctgtcaaaa 32447821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 362 - 408
Target Start/End: Original strand, 27611778 - 27611824
Alignment:
Q  362 tgatatttcattactttgtaaactagtctcttgacaagaatagcaca 408  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  27611778 tgatatttcattactttgtaaactagtctcttaacaagaataacaca 27611824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 27605255 - 27605296
Alignment:
Q  290 ctatagccgtgtggaccaatcacatactaaatatcattgtac 331  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  27605255 ctatagccgtgtggaccaatcacatactaaatatcactgtac 27605296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 26655680 - 26655628
Alignment:
Q  280 tggccacttcctatagccgtgtggacc-aatcacatactaaatatcattgtac 331  Q
    |||||||||  |||||||||||||||| |||||||||||||||||||||||||    
T  26655680 tggccacttgttatagccgtgtggacccaatcacatactaaatatcattgtac 26655628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 26761651 - 26761599
Alignment:
Q  280 tggccacttcctatagccgtgtggacc-aatcacatactaaatatcattgtac 331  Q
    |||||||||  |||||||||||||||| |||||||||||||||||||||||||    
T  26761651 tggccacttgttatagccgtgtggacccaatcacatactaaatatcattgtac 26761599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 27531664 - 27531720
Alignment:
Q  275 cttcctggccacttcctatagccgtgtggaccaatcacatactaaatatcattgtac 331  Q
    ||||||||| ||||||||||||||||||||||||||| | | |||||| ||||||||    
T  27531664 cttcctggcaacttcctatagccgtgtggaccaatcatacattaaataacattgtac 27531720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 27586230 - 27586278
Alignment:
Q  275 cttcctggccacttcctatagccgtgtggaccaatcacatactaaatat 323  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||    
T  27586230 cttcctggccactttgaatagccgtgtggaccaatcacatactaaatat 27586278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 27725324 - 27725380
Alignment:
Q  275 cttcctggccacttcctatagccgtgt-ggaccaatcacatactaaatatcattgta 330  Q
    ||||||||||||||||||||||||||| |||||||||| | | ||||||||||||||    
T  27725324 cttcctggccacttcctatagccgtgtgggaccaatcatacaataaatatcattgta 27725380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 27725704 - 27725743
Alignment:
Q  23 tgtaaagtaatcatcacatccttcttccatgtaatttctt 62  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  27725704 tgtaaagtaaccatcacatccttcttccatgtaatttctt 27725743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 27338549 - 27338586
Alignment:
Q  275 cttcctggccacttcctatagccgtgtggaccaatcac 312  Q
    |||| |||||||||||||||||||||||||||||||||    
T  27338549 cttcttggccacttcctatagccgtgtggaccaatcac 27338586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 27399289 - 27399326
Alignment:
Q  275 cttcctggccacttcctatagccgtgtggaccaatcac 312  Q
    |||| |||||||||||||||||||||||||||||||||    
T  27399289 cttcttggccacttcctatagccgtgtggaccaatcac 27399326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 311
Target Start/End: Original strand, 27718860 - 27718895
Alignment:
Q  276 ttcctggccacttcctatagccgtgtggaccaatca 311  Q
    |||||| |||||||||||||||||||||||||||||    
T  27718860 ttcctgaccacttcctatagccgtgtggaccaatca 27718895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 546
Target Start/End: Original strand, 3396187 - 3396229
Alignment:
Q  504 tggagcagaattggcacttacattcataaaaattcggagcacg 546  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||    
T  3396187 tggagcagaattggcactttcattcgtaaaaaatcggagcacg 3396229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 28780840 - 28780798
Alignment:
Q  20 ttctgtaaagtaatcatcacatccttcttccatgtaatttctt 62  Q
    |||||||||| || |||| ||||||||||||||||||||||||    
T  28780840 ttctgtaaagcaaccatctcatccttcttccatgtaatttctt 28780798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 26801708 - 26801671
Alignment:
Q  23 tgtaaagtaatcatcacatccttcttccatgtaatttc 60  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  26801708 tgtaaagtaaccatctcatccttcttccatgtaatttc 26801671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 309
Target Start/End: Original strand, 27698973 - 27699006
Alignment:
Q  276 ttcctggccacttcctatagccgtgtggaccaat 309  Q
    |||||| |||||||||||||||||||||||||||    
T  27698973 ttcctgaccacttcctatagccgtgtggaccaat 27699006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 436 - 499
Target Start/End: Original strand, 79664 - 79726
Alignment:
Q  436 tgtgaaagtgactcaaaattggagaaattgaagtttgcttaagctgtcaaaatcgaagcacgat 499  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  79664 tgtgaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaatcggagcacgat 79726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 537 - 607
Target Start/End: Original strand, 79715 - 79785
Alignment:
Q  537 tcggagcacggtatggcaaaatcggagtacgattttgcgcagtcataaaaataaaacgtatttttgggcct 607  Q
    |||||||||| | |||||||||||||| ||| ||| ||| ||||| |||||||||||||||||||||||||    
T  79715 tcggagcacgatctggcaaaatcggagcacggtttagcgtagtcagaaaaataaaacgtatttttgggcct 79785  T

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Target: scaffold0349 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 8891 - 8943
Alignment:
Q  8 cccatttcgtatttctgtaaagtaatcatcacatccttcttccatgtaatttc 60  Q
    |||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  8891 cccatttcatatgtctgtaaagtaaccatcacatccttcttccatgtaatttc 8943  T

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Target: scaffold0349; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 3901 - 3957
Alignment:
Q  275 cttcctggccacttcctatagccgtgt-ggaccaatcacatactaaatatcattgta 330  Q
    ||||||||||||||||||||||||||| |||||||||| | | ||||||||||||||    
T  3901 cttcctggccacttcctatagccgtgtgggaccaatcatacaataaatatcattgta 3957  T

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Target: scaffold0349; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 4280 - 4319
Alignment:
Q  23 tgtaaagtaatcatcacatccttcttccatgtaatttctt 62  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  4280 tgtaaagtaaccatcacatccttcttccatgtaatttctt 4319  T

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Target: scaffold0349; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 311
Target Start/End: Original strand, 8282 - 8317
Alignment:
Q  276 ttcctggccacttcctatagccgtgtggaccaatca 311  Q
    |||||| |||||||||||||||||||||||||||||    
T  8282 ttcctgaccacttcctatagccgtgtggaccaatca 8317  T

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Target: scaffold0349; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 309
Target Start/End: Original strand, 14834 - 14867
Alignment:
Q  276 ttcctggccacttcctatagccgtgtggaccaat 309  Q
    |||||| |||||||||||||||||||||||||||    
T  14834 ttcctgaccacttcctatagccgtgtggaccaat 14867  T

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Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 474 - 559
Target Start/End: Original strand, 85045 - 85131
Alignment:
Q  474 ttaagctgtcaaaatcgaag-cacgattttttggagcagaattggcacttacattcataaaaattcggagcacggtatggcaaaatc 559  Q
    |||| |||||||||||| || ||||||||||||||||||||||| ||||| ||||| |||||| ||||| |||| | | ||||||||    
T  85045 ttaaactgtcaaaatcggaggcacgattttttggagcagaattgacactttcattcgtaaaaaatcggaacacgatctagcaaaatc 85131  T

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Target: scaffold1254 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 401 - 437
Alignment:
Q  275 cttcctggccacttcctatagccgtgtggaccaatca 311  Q
    |||| ||||||||||||||||||||||||||||||||    
T  401 cttcttggccacttcctatagccgtgtggaccaatca 437  T

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Target: scaffold0419 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 7228 - 7192
Alignment:
Q  275 cttcctggccacttcctatagccgtgtggaccaatca 311  Q
    |||| ||||||||||||||||||||||||||||||||    
T  7228 cttcttggccacttcctatagccgtgtggaccaatca 7192  T

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Target: scaffold0277 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 5603 - 5645
Alignment:
Q  20 ttctgtaaagtaatcatcacatccttcttccatgtaatttctt 62  Q
    |||||||||| || |||| ||||||||||||||||||||||||    
T  5603 ttctgtaaagcaaccatctcatccttcttccatgtaatttctt 5645  T

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Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 14118 - 14160
Alignment:
Q  20 ttctgtaaagtaatcatcacatccttcttccatgtaatttctt 62  Q
    |||||||||| || |||| ||||||||||||||||||||||||    
T  14118 ttctgtaaagcaaccatctcatccttcttccatgtaatttctt 14160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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