View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0571-INSERTION-15 (Length: 500)
Name: NF0571-INSERTION-15
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571-INSERTION-15 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 280 - 499
Target Start/End: Original strand, 38886485 - 38886704
Alignment:
| Q |
280 |
aaatattatggtgttaatcaattatagggtgctggaattcatgagttacctggactacctgctggggtgaagtttgatccaactgatcaagagattcttg |
379 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38886485 |
aaatattatggtgttaatcaattatagggtgctggaattcatgagttacctggactacctgctggggtgaagtttgatccaactgatcaagagattcttg |
38886584 |
T |
|
| Q |
380 |
aacatttggaagcaaaagtgaggtctgatattcaaatgcttcatcctttaattgatgaattcatccctactcttgaaggagagaatggaatctgctgtac |
479 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38886585 |
aacatttggaagcaaaagtgaggtctgatattcaaatgcttcatcctttaattgatgaattcatccctactcttgaaggagagaatggaatctgctgtac |
38886684 |
T |
|
| Q |
480 |
tcatccagagaagttaccag |
499 |
Q |
| |
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|||||||||||||||||||| |
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| T |
38886685 |
tcatccagagaagttaccag |
38886704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 38886213 - 38886412
Alignment:
| Q |
8 |
gtagttaccctgaaaataatcatagtactatccttatggagagacgcaaagatagcttaatcagaacttgtcctacatgtggtcatcatatcaaatgcca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38886213 |
gtagttaccctgaaaataatcatagtactatccttatggagagacgcaaagatagcttaatcagaacttgtcctacatgtggtcatcatatcaaatgcca |
38886312 |
T |
|
| Q |
108 |
agatcaggttcttcacattcgttacgaaattacagtgacactgtgattttgttaaagcattaaaatgtagcttttgccaaaatcatgacacacaacgaaa |
207 |
Q |
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| T |
38886313 |
agatcaggttcttcacattcgttacaaaattacagtgacaccgtgattttgttaaagcattaaaatgtagcttttgccaaaatcatgacacacaacgaaa |
38886412 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 4499416 - 4499466
Alignment:
| Q |
142 |
gtgacactgtgattttgttaaagcattaaaatgtagcttttgccaaaatca |
192 |
Q |
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|||||| |||||||| ||| |||| | |||||||||||||||||||||||| |
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| T |
4499416 |
gtgacattgtgatttggtttaagcttcaaaatgtagcttttgccaaaatca |
4499466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 38192087 - 38192030
Alignment:
| Q |
134 |
aaattacagtgacactgtgattttgttaaagcattaaaatgtagcttttgccaaaatc |
191 |
Q |
| |
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|||||||||||||| |||||||||||| |||| || || ||||| |||||||| |||| |
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|
| T |
38192087 |
aaattacagtgacattgtgattttgttgaagctttgaagtgtagtttttgccagaatc |
38192030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 304 - 491
Target Start/End: Original strand, 30504916 - 30505103
Alignment:
| Q |
304 |
tagggtgctggaattcatgagttacctggactacctgctggggtgaagtttgatccaactgatcaagagattcttgaacatttggaagcaaaagtgaggt |
403 |
Q |
| |
|
||||||| ||||||| |||| ||||||||| | || ||||| |||||||||||||| || |||||||||||||||||||||||||||||||| | | || |
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| T |
30504916 |
tagggtggtggaattaatgacttacctggattgccagctggagtgaagtttgatcctacagatcaagagattcttgaacatttggaagcaaaggcaaagt |
30505015 |
T |
|
| Q |
404 |
ctgatattcaaatgcttcatcctttaattgatgaattcatccctactcttgaaggagagaatggaatctgctgtactcatccagagaa |
491 |
Q |
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| |||||||| | |||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
30505016 |
cagatattcataagcttcaccctctaattgatgagttcatccctactcttgaaggagaaaatggaatctgctatactcatccagagaa |
30505103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 328 - 470
Target Start/End: Original strand, 30512571 - 30512713
Alignment:
| Q |
328 |
cctggactacctgctggggtgaagtttgatccaactgatcaagagattcttgaacatttggaagcaaaagtgaggtctgatattcaaatgcttcatcctt |
427 |
Q |
| |
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|||||| | ||| |||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||||| | |||||| ||| |
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| T |
30512571 |
cctggattgccttctggagtgaagtttgatccaacagatcaagagattcttgaacctttgggagcaatggtgaggtctgatattcataagcttcaccctc |
30512670 |
T |
|
| Q |
428 |
taattgatgaattcatccctactcttgaaggagagaatggaat |
470 |
Q |
| |
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||||||| || |||||||| |||||||||||| |||||||||| |
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| T |
30512671 |
taattgacgagttcatcccaactcttgaaggatagaatggaat |
30512713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 30504521 - 30504578
Alignment:
| Q |
61 |
agcttaatcagaacttgtcctacatgtggtcatcatatcaaatgccaagatcaggttc |
118 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
30504521 |
agcttaattagaacttgtctcacatgtggtcatcatatcaaaggccaagatcaggttc |
30504578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 34832409 - 34832256
Alignment:
| Q |
346 |
gtgaagtttgatccaactgatcaagagattcttgaacatttggaagcaaaagtgaggtctgatattcaaatgcttcatcctttaattgatgaattcatcc |
445 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||| | |||||||||||||| || || |||| | | | ||||||||| | |||||||| ||||| | |
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| T |
34832409 |
gtgaagtttgatccgaatgatcaagagatacttcagcatttggaagcaaaggttctgtttgatgtgcccaaacttcatcctcttattgatgagttcatac |
34832310 |
T |
|
| Q |
446 |
ctactcttgaaggagagaatggaatctgctgtactcatccagagaagttaccag |
499 |
Q |
| |
|
| || |||||||||||||| |||||||| | ||| |||||||| ||| |||||| |
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|
| T |
34832309 |
caacacttgaaggagagaacggaatctgttatacacatccagaaaagctaccag |
34832256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 499
Target Start/End: Complemental strand, 28951101 - 28950948
Alignment:
| Q |
346 |
gtgaagtttgatccaactgatcaagagattcttgaacatttggaagcaaaagtgaggtctgatattcaaatgcttcatcctttaattgatgaattcatcc |
445 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||| | |||||||||||||| || || |||| | | | ||||||||| | |||||||| ||||| | |
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|
| T |
28951101 |
gtgaagtttgatccgaatgatcaagagatacttcagcatttggaagcaaaggttctgtttgatgtgcccaaacttcatcctcttattgatgagttcatac |
28951002 |
T |
|
| Q |
446 |
ctactcttgaaggagagaatggaatctgctgtactcatccagagaagttaccag |
499 |
Q |
| |
|
| || |||||||||||||| |||||||| | ||| |||||||| ||| |||||| |
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|
| T |
28951001 |
caacacttgaaggagagaacggaatctgttatacacatccagaaaagctaccag |
28950948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 5717806 - 5717858
Alignment:
| Q |
139 |
acagtgacactgtgattttgttaaagcattaaaatgtagcttttgccaaaatc |
191 |
Q |
| |
|
||||||| |||||||||||||| |||| |||||||||| ||||| ||||||| |
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|
| T |
5717806 |
acagtgagactgtgattttgttgaagctttaaaatgtaacttttatcaaaatc |
5717858 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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