View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571-INSERTION-16 (Length: 669)
Name: NF0571-INSERTION-16
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571-INSERTION-16 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 374 - 669
Target Start/End: Complemental strand, 43864093 - 43863797
Alignment:
| Q |
374 |
atgacgagcccatactcacgggtccacttcgaccatttgcaactgcaactaagaaacaaagttgagaaagttactagtaatt-acccagacactaaaggt |
472 |
Q |
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| T |
43864093 |
atgacgaacccatactcacgggtccacttcgaccatttgcaactgcaactaagaaacaaagttgagaaagttactagtaatttacccagacactaaaggt |
43863994 |
T |
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| Q |
473 |
tagaagtgttcatcatactaaaatatccagcatagattttgtagaaaatatcttctcaaactcaatgcttagttaacaaaaattgaaacatcgatagaaa |
572 |
Q |
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| T |
43863993 |
tagaagtgttcatcatactaaaatatccaacatagattttgtagaaaatatcttctcaaactcaatgcttagttaacaaaaattgaaacatcaatagaaa |
43863894 |
T |
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| Q |
573 |
tttttgtaagttgtaacagtcaaattattgtattggtgaaaaccatgcacacctttcttgaaaaggaaacaacaagttaatgtaaatagaagtcgta |
669 |
Q |
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| T |
43863893 |
tttttgtaagttgtaacagtcaaattattgtattgttgaaaaccatgcacacctttcttgaaaaggaaacaacaagttaatgtaaatagaagtcgta |
43863797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 43864428 - 43864091
Alignment:
| Q |
8 |
tgaatttggntttggatgcatagtgtaattgtggatcaatatctaaaaattgctnnnnnnntaatttgaaaagaccaacctcatcaactttgattataag |
107 |
Q |
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| T |
43864428 |
tgaatttgg-tttggatgcatagtgtaattgtggatcaatatctaaaaattgctaaaaaa--aaattgaaaagaccaacctcgtcaactttgattataag |
43864332 |
T |
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| Q |
108 |
ttaagagtcttccacatctttacatttgatacaatcacttcattcacgttgatttgacaacaacaaaataaatataattataagtttatttttgaggcac |
207 |
Q |
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| T |
43864331 |
ttaagagtcttccacatctttacatttgatacaatcacttcattcatgttgatttgacaacaacaaaataaatataattataaatttatttttgaggtac |
43864232 |
T |
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| Q |
208 |
tgacctgctannnnnnngtcaaatcgaca-cgattaaatcatcatttcatttctatccttaattatgaaaacaattttaatcaaagatttttaagtatta |
306 |
Q |
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| T |
43864231 |
tgacctgctatttttttgtcaaatcgacaccgattaagtca-----tcatttctatccttaattatgaaaacaattttaatcaaagatttttaaatatta |
43864137 |
T |
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| Q |
307 |
gtcttcaatagacaatatgagatattttctccacacataacaaatg |
352 |
Q |
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| T |
43864136 |
gtcttcaatagacaatatgagatattttctccacacataacaaatg |
43864091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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