View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0571-INSERTION-17 (Length: 631)

Name: NF0571-INSERTION-17
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0571-INSERTION-17
NF0571-INSERTION-17
[»] chr1 (2 HSPs)
chr1 (2-480)||(44390814-44391285)
chr1 (481-595)||(44391311-44391425)
[»] chr5 (3 HSPs)
chr5 (525-583)||(8986991-8987051)
chr5 (527-583)||(25550735-25550793)
chr5 (533-583)||(16043580-16043632)
[»] chr2 (1 HSPs)
chr2 (525-583)||(29687640-29687700)
[»] scaffold0112 (1 HSPs)
scaffold0112 (509-595)||(34652-34740)
[»] scaffold0093 (1 HSPs)
scaffold0093 (509-583)||(16276-16352)
[»] chr7 (2 HSPs)
chr7 (478-576)||(8790674-8790774)
chr7 (531-584)||(21417717-21417772)
[»] chr8 (1 HSPs)
chr8 (525-583)||(26131935-26131995)


Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 2 - 480
Target Start/End: Original strand, 44390814 - 44391285
Alignment:
Q  2 ccaacacaacaaacttcctgcgatgatcaaacgatagctacaacaacataaaggcaaggtgcattaggtatgattcgtaatccctatacttcaacgatgg 101  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  44390814 ccaactcaacaaacttcctgcgatgatcaaacgatagctacaacaacataaaggcaaggtgcattaggtatgcttcgtaatccctatacttcaatgatgg 44390913  T
Q  102 ttgttacaactctagttaggtgacaacgcccacaaagagttttctttaaatgtaatgtcgatgcaactttctccaaacatttgaataaaacgagtattgt 201  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  44390914 ttgttacaactctagttaggtgacaacgccggcaaagagttttctttaaatgtaatgtcgatacaactttctccaaacatttgaataaaacgagcattgt 44391013  T
Q  202 tatttgtatctgtgatgatgaaggcacgtttctgatggcaaaaactttatctatcactcctatgtacggtggtcgtgggagaagcacttggattgtttca 301  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44391014 tatttgtatctgtgatgatgaaggcacgtttctgttggcaaaaactttatctatcactcctaagtacggtggtcgtgggagaagcacttggattgtttca 44391113  T
Q  302 tgctttacgatggttgagtgacatgcaatttgataatgttggtcttgctttggattcaaagattgcaacaaacaccttcaatcatcatt-ggttgatgta 400  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44391114 tgctttacgatggttaagtgacatgcaatttgataatgttggtcttgctttggattcaaagattgcaacaaacaccttcaatcatcattgggttgatgta 44391213  T
Q  401 acagaattaatcatgtggtttgagtttgaatgagtcttttctaccagactaccacttatttcaccaactctaaggtcgag 480  Q
    |||||||||||||||||||||||||||| |||||||||||         |||||||||||||||||||||||||||||||    
T  44391214 acagaattaatcatgtggtttgagtttgcatgagtctttt--------ttaccacttatttcaccaactctaaggtcgag 44391285  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 481 - 595
Target Start/End: Original strand, 44391311 - 44391425
Alignment:
Q  481 gaagctcacacccttgcagaaattgtttcattatcacctagttgcactatttattatcatgtacctcgttatataaactcttatttttaatgaaatgtta 580  Q
    |||||||||||||||||||||||||   |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44391311 gaagctcacacccttgcagaaattgccgcattatcagctagttccactatttattatcatgtacctcgttatataaactcttatttttaatgaaatgtta 44391410  T
Q  581 taaacatgttctttt 595  Q
    |||||||||||||||    
T  44391411 taaacatgttctttt 44391425  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 525 - 583
Target Start/End: Complemental strand, 8987051 - 8986991
Alignment:
Q  525 cactatttattatcatgtacctcgttatataaa--ctcttatttttaatgaaatgttataa 583  Q
    |||||||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||||    
T  8987051 cactatttattatcttgtacctcgttgtataaactctcttatttttaatgaaatgttataa 8986991  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 527 - 583
Target Start/End: Original strand, 25550735 - 25550793
Alignment:
Q  527 ctatttattatcatgtacctcgttatataaa--ctcttatttttaatgaaatgttataa 583  Q
    |||||||||||| |||||||||| |||||||  |||||||| |||||||||||||||||    
T  25550735 ctatttattatcgtgtacctcgtcatataaactctcttattattaatgaaatgttataa 25550793  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 583
Target Start/End: Original strand, 16043580 - 16043632
Alignment:
Q  533 attatcatgtacctcgttatataaa--ctcttatttttaatgaaatgttataa 583  Q
    |||||||||||||||||| ||||||  |||||||| ||||||||||| |||||    
T  16043580 attatcatgtacctcgttgtataaactctcttattattaatgaaatgctataa 16043632  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 525 - 583
Target Start/End: Complemental strand, 29687700 - 29687640
Alignment:
Q  525 cactatttattatcatgtacctcgttatataaa--ctcttatttttaatgaaatgttataa 583  Q
    |||||||||||||| ||||||||||| ||||||  |||||||| |||||||||||||||||    
T  29687700 cactatttattatcgtgtacctcgttgtataaactctcttattattaatgaaatgttataa 29687640  T

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Target: scaffold0112 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 595
Target Start/End: Original strand, 34652 - 34740
Alignment:
Q  509 cattatcacctagttgcactatttattatcatgtacctcgttatataaactct--tatttttaatgaaatgttataaacatgttctttt 595  Q
    |||||||| ||||||  | | |||||||||||||||  |||| ||||||||||  |||| ||||||||||| ||||| |||||||||||    
T  34652 cattatcaactagttctaatttttattatcatgtactacgttgtataaactctcttattattaatgaaatgctataagcatgttctttt 34740  T

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Target: scaffold0093 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 583
Target Start/End: Complemental strand, 16352 - 16276
Alignment:
Q  509 cattatcacctagttgcactatttattatcatgtacctcgttatataaa--ctcttatttttaatgaaatgttataa 583  Q
    |||||||| |||||  || ||||||||||||||||| ||||| ||||||  |||||||| ||||||||||| |||||    
T  16352 cattatcaactagtcccaatatttattatcatgtacttcgttgtataaactctcttattattaatgaaatgctataa 16276  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 478 - 576
Target Start/End: Original strand, 8790674 - 8790774
Alignment:
Q  478 gaggaagctcacacccttgcagaaattgtttcattatcacctagttgcactatttattatcatgtacctcgttatataaa--ctcttatttttaatgaaa 575  Q
    |||| ||||||||||||||| ||  |||   |||||||| |||||  || ||||||||||||| ||||||||| ||||||  |||||||| |||||||||    
T  8790674 gaggtagctcacacccttgctgaggttgccacattatcagctagtcccaatatttattatcatatacctcgttgtataaactctcttattattaatgaaa 8790773  T
Q  576 t 576  Q
    |    
T  8790774 t 8790774  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 531 - 584
Target Start/End: Complemental strand, 21417772 - 21417717
Alignment:
Q  531 ttattatcatgtacctcgttatataaactct--tatttttaatgaaatgttataaa 584  Q
    |||||||||| ||||||||| ||||||||||  |||| ||||| ||||||||||||    
T  21417772 ttattatcatatacctcgttgtataaactctcttattattaataaaatgttataaa 21417717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 583
Target Start/End: Original strand, 26131935 - 26131995
Alignment:
Q  525 cactatttattatcatgtacctcgttatataaact--cttatttttaatgaaatgttataa 583  Q
    |||||||||||||| ||||||||||| ||| ||||  |||||| ||||||||||| |||||    
T  26131935 cactatttattatcgtgtacctcgttgtattaactcacttattattaatgaaatgctataa 26131995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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