View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0571-INSERTION-18 (Length: 653)

Name: NF0571-INSERTION-18
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0571-INSERTION-18
NF0571-INSERTION-18
[»] chr2 (5 HSPs)
chr2 (168-653)||(7046978-7047464)
chr2 (8-160)||(7043767-7043919)
chr2 (101-160)||(12464517-12464575)
chr2 (73-160)||(3611164-3611252)
chr2 (12-48)||(4606858-4606894)
[»] chr4 (7 HSPs)
chr4 (14-47)||(44797761-44797794)
chr4 (16-47)||(43505829-43505860)
chr4 (16-47)||(47119103-47119134)
chr4 (14-47)||(45935381-45935414)
chr4 (12-48)||(1203269-1203305)
chr4 (15-47)||(17204008-17204040)
chr4 (12-40)||(49803099-49803127)
[»] chr8 (4 HSPs)
chr8 (17-48)||(41475217-41475248)
chr8 (14-48)||(34236041-34236075)
chr8 (16-48)||(27752433-27752465)
chr8 (15-47)||(29819048-29819080)
[»] chr6 (4 HSPs)
chr6 (12-47)||(35098916-35098951)
chr6 (73-159)||(6647327-6647412)
chr6 (9-37)||(7946042-7946070)
chr6 (7-47)||(35069424-35069464)
[»] chr3 (7 HSPs)
chr3 (12-47)||(38901963-38901998)
chr3 (12-47)||(42747919-42747954)
chr3 (14-47)||(849551-849584)
chr3 (15-48)||(944363-944396)
chr3 (14-47)||(46886855-46886888)
chr3 (12-40)||(3845737-3845765)
chr3 (15-47)||(18405986-18406018)
[»] chr7 (4 HSPs)
chr7 (12-46)||(28210322-28210356)
chr7 (15-48)||(36517485-36517518)
chr7 (14-46)||(40377997-40378029)
chr7 (12-40)||(45593415-45593443)
[»] chr1 (5 HSPs)
chr1 (13-47)||(27820498-27820532)
chr1 (10-47)||(51688570-51688607)
chr1 (14-46)||(37473268-37473300)
chr1 (16-48)||(46423151-46423183)
chr1 (15-47)||(47499001-47499033)
[»] chr5 (7 HSPs)
chr5 (16-96)||(5559610-5559691)
chr5 (15-48)||(12433537-12433570)
chr5 (15-48)||(13697926-13697959)
chr5 (101-138)||(24030467-24030504)
chr5 (73-123)||(40452229-40452281)
chr5 (15-47)||(28776855-28776887)
chr5 (12-47)||(29845055-29845091)


Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 168 - 653
Target Start/End: Complemental strand, 7047464 - 7046978
Alignment:
Q  168 taatttaat-acacataaaaattaggatttatgtcatatacaccgaatgactctaaaatgtttagaatatgaatcaattataaccgtcaaattatcatag 266  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7047464 taatttaatcacacataaaaatgacgatttatgtcatatacaccgaatgactctaaaatgtttagaatgtgaatcaattataaccgtcaaattatcatag 7047365  T
Q  267 atattcaacttttatattaacctcctccaaagtcatgcacatgaatgtctttcttttagggaaccatgcacataaaagtttacggtgtaccgataattta 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||    
T  7047364 atattcaacttttatattaacctcctccaaagtcatgcacatgaatgtcttttttttagggaaccatgcacataaaagtttacagtgtactgataattta 7047265  T
Q  367 agtaaaatgttttatacagttatttcaatgtctctatatatgattattcttttatataagaaaatgccccatatcaacaaacattccttgac--nnnnnn 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||            
T  7047264 agtaaaatgttttatacagttatttcaatgtctctatatatgattattcttttatataagaaaatgcaccatatcaacaaacattccttgacaaaaaaaa 7047165  T
Q  465 nnnnncattcaaatgaaatgaaagatagattgaattcttatgcattaaataatatgtattcacgagtaatgggagataaattgaaaaatcaaaacactaa 564  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7047164 aaaaacattcaaatgaaatgaaagatagattgaattcttatgcattaaataatatgtattcacgagtaatgggagataaattgaaaaatcaaaacactaa 7047065  T
Q  565 tgtcaaccttagacatgaactaacataaacattcaaaatcatttttatcaaagtttcaaaagatggggggtaaaaataaatgcattgga 653  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  7047064 tgtcaaccttagacatgaactaacataaacattcaaaatcatttttatcaaagtttc-aaagat-gggggtaaaaataaatgcattgga 7046978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 7043919 - 7043767
Alignment:
Q  8 ataagccctgtttggataaacaacttatttgcaacttataaaatagatgtttatcacaatagacacttatatataagttatttctatagaacaataaaat 107  Q
    ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  7043919 ataagtcctgtttggataaacaacttatttgcagcttataacatagatgtttatcacaataaacgcttatgtataagttatttctatagaacaataaaat 7043820  T
Q  108 aaagttaaattattttttgtataggttataatctattatcataagctatcttg 160  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  7043819 aaagttaaattattttttgtataagttataatctattattataagctatcttg 7043767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 12464575 - 12464517
Alignment:
Q  101 ataaaataaagttaaattattttttgtataggttataatctattatcataagctatcttg 160  Q
    |||||||||||||||||| ||||| ||||| | ||||| ||||| |||||||||||||||    
T  12464575 ataaaataaagttaaattgttttt-gtatatgctataagctattttcataagctatcttg 12464517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 3611164 - 3611252
Alignment:
Q  73 cttatatataagttatttctatagaacaa--taaaataaagttaaattattttttgtataggttataatctattatcataagctatcttg 160  Q
    ||||| |||||||||||||||||| | ||  |||||||||||||||||  ||||||||||| |||||  || || ||| |||||||||||    
T  3611164 cttatgtataagttatttctatagcaaaaggtaaaataaagttaaatt-gtttttgtatagtttatagactgttttcacaagctatcttg 3611252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 4606858 - 4606894
Alignment:
Q  12 gccctgtttggataaacaacttatttgcaacttataa 48  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  4606858 gccctgtttggataaacaacttattcgcagcttataa 4606894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 44797761 - 44797794
Alignment:
Q  14 cctgtttggataaacaacttatttgcaacttata 47  Q
    ||||||||||||||||||||||||||||||||||    
T  44797761 cctgtttggataaacaacttatttgcaacttata 44797794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 43505829 - 43505860
Alignment:
Q  16 tgtttggataaacaacttatttgcaacttata 47  Q
    ||||||||||||||||||||||||||||||||    
T  43505829 tgtttggataaacaacttatttgcaacttata 43505860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 47119134 - 47119103
Alignment:
Q  16 tgtttggataaacaacttatttgcaacttata 47  Q
    ||||||||||||||||||||||||||||||||    
T  47119134 tgtttggataaacaacttatttgcaacttata 47119103  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 45935414 - 45935381
Alignment:
Q  14 cctgtttggataaacaacttatttgcaacttata 47  Q
    ||||||||||||||||||||||||||| ||||||    
T  45935414 cctgtttggataaacaacttatttgcagcttata 45935381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 1203305 - 1203269
Alignment:
Q  12 gccctgtttggataaacaacttatttgcaacttataa 48  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  1203305 gccctgtttggataaacaatttatttgcagcttataa 1203269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 17204008 - 17204040
Alignment:
Q  15 ctgtttggataaacaacttatttgcaacttata 47  Q
    |||||||||||||||||||||||||| ||||||    
T  17204008 ctgtttggataaacaacttatttgcagcttata 17204040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 49803099 - 49803127
Alignment:
Q  12 gccctgtttggataaacaacttatttgca 40  Q
    |||||||||||||||||||||||||||||    
T  49803099 gccctgtttggataaacaacttatttgca 49803127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 41475248 - 41475217
Alignment:
Q  17 gtttggataaacaacttatttgcaacttataa 48  Q
    ||||||||||||||||||||||||||||||||    
T  41475248 gtttggataaacaacttatttgcaacttataa 41475217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 34236041 - 34236075
Alignment:
Q  14 cctgtttggataaacaacttatttgcaacttataa 48  Q
    ||||||||||||||||||||||||||| |||||||    
T  34236041 cctgtttggataaacaacttatttgcagcttataa 34236075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 27752433 - 27752465
Alignment:
Q  16 tgtttggataaacaacttatttgcaacttataa 48  Q
    ||||||||||||||||||||||||| |||||||    
T  27752433 tgtttggataaacaacttatttgcagcttataa 27752465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 29819080 - 29819048
Alignment:
Q  15 ctgtttggataaacaacttatttgcaacttata 47  Q
    |||||||||||||||||||||||||| ||||||    
T  29819080 ctgtttggataaacaacttatttgcagcttata 29819048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 35098916 - 35098951
Alignment:
Q  12 gccctgtttggataaacaacttatttgcaacttata 47  Q
    |||||||||| |||||||||||||||||||||||||    
T  35098916 gccctgtttgaataaacaacttatttgcaacttata 35098951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 6647327 - 6647412
Alignment:
Q  73 cttatatataagttatttctatagaacaataaaataaagttaaattattttttgtataggttataatctattatcataagctatctt 159  Q
    ||||| |||||||||||||||||  | || | |||||||| |||||| |||   ||||||||||||||| || ||||||||||||||    
T  6647327 cttatgtataagttatttctataacaaaaaataataaagtcaaattactttaa-tataggttataatctgttttcataagctatctt 6647412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 7946070 - 7946042
Alignment:
Q  9 taagccctgtttggataaacaacttattt 37  Q
    |||||||||||||||||||||||||||||    
T  7946070 taagccctgtttggataaacaacttattt 7946042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 35069424 - 35069464
Alignment:
Q  7 aataagccctgtttggataaacaacttatttgcaacttata 47  Q
    |||| ||||||||| ||||||||||||||||||| ||||||    
T  35069424 aataggccctgttttgataaacaacttatttgcagcttata 35069464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 38901963 - 38901998
Alignment:
Q  12 gccctgtttggataaacaacttatttgcaacttata 47  Q
    |||||||||||||||||| |||||||||||||||||    
T  38901963 gccctgtttggataaacagcttatttgcaacttata 38901998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 42747954 - 42747919
Alignment:
Q  12 gccctgtttggataaacaacttatttgcaacttata 47  Q
    |||||||||||||||||| |||||||||||||||||    
T  42747954 gccctgtttggataaacagcttatttgcaacttata 42747919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 849551 - 849584
Alignment:
Q  14 cctgtttggataaacaacttatttgcaacttata 47  Q
    ||||||||||||||||||||||||||| ||||||    
T  849551 cctgtttggataaacaacttatttgcagcttata 849584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 944363 - 944396
Alignment:
Q  15 ctgtttggataaacaacttatttgcaacttataa 48  Q
    |||||||||||||||||||||||||| |||||||    
T  944363 ctgtttggataaacaacttatttgcagcttataa 944396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 46886888 - 46886855
Alignment:
Q  14 cctgtttggataaacaacttatttgcaacttata 47  Q
    ||||||||||||||||||||||||||| ||||||    
T  46886888 cctgtttggataaacaacttatttgcagcttata 46886855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 3845765 - 3845737
Alignment:
Q  12 gccctgtttggataaacaacttatttgca 40  Q
    |||||||||||||||||||||||||||||    
T  3845765 gccctgtttggataaacaacttatttgca 3845737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 18406018 - 18405986
Alignment:
Q  15 ctgtttggataaacaacttatttgcaacttata 47  Q
    ||||||||||||||| |||||||||||||||||    
T  18406018 ctgtttggataaacagcttatttgcaacttata 18405986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 28210322 - 28210356
Alignment:
Q  12 gccctgtttggataaacaacttatttgcaacttat 46  Q
    ||||||||||||||||||||||||||||| |||||    
T  28210322 gccctgtttggataaacaacttatttgcagcttat 28210356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 36517485 - 36517518
Alignment:
Q  15 ctgtttggataaacaacttatttgcaacttataa 48  Q
    ||||||| ||||||||||||||||||||||||||    
T  36517485 ctgtttgaataaacaacttatttgcaacttataa 36517518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 40378029 - 40377997
Alignment:
Q  14 cctgtttggataaacaacttatttgcaacttat 46  Q
    ||||||||||||||||||||||||||| |||||    
T  40378029 cctgtttggataaacaacttatttgcagcttat 40377997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 45593415 - 45593443
Alignment:
Q  12 gccctgtttggataaacaacttatttgca 40  Q
    |||||||||||||||||||||||||||||    
T  45593415 gccctgtttggataaacaacttatttgca 45593443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 27820532 - 27820498
Alignment:
Q  13 ccctgtttggataaacaacttatttgcaacttata 47  Q
    |||||||||||||||||||||||||||| ||||||    
T  27820532 ccctgtttggataaacaacttatttgcagcttata 27820498  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 51688570 - 51688607
Alignment:
Q  10 aagccctgtttggataaacaacttatttgcaacttata 47  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  51688570 aagccttgtttggataaacaacttatttgcagcttata 51688607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 37473268 - 37473300
Alignment:
Q  14 cctgtttggataaacaacttatttgcaacttat 46  Q
    ||||||||||||||||||||||||||| |||||    
T  37473268 cctgtttggataaacaacttatttgcagcttat 37473300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 46423151 - 46423183
Alignment:
Q  16 tgtttggataaacaacttatttgcaacttataa 48  Q
    ||||||||||||||||||||||||| |||||||    
T  46423151 tgtttggataaacaacttatttgcagcttataa 46423183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 47499033 - 47499001
Alignment:
Q  15 ctgtttggataaacaacttatttgcaacttata 47  Q
    |||||||||||||||||||||||||| ||||||    
T  47499033 ctgtttggataaacaacttatttgcagcttata 47499001  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 5559610 - 5559691
Alignment:
Q  16 tgtttggataaacaactt-atttgcaacttataaaatagatgtttatcacaatagacacttatatataagttatttctatag 96  Q
    |||||||||||||||||| ||||||| |||||| |||| ||||||||||  |||  | ||| | ||| ||||||||||||||    
T  5559610 tgtttggataaacaacttaatttgcagcttatataataaatgtttatcatgataagcgcttgtgtatgagttatttctatag 5559691  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 12433570 - 12433537
Alignment:
Q  15 ctgtttggataaacaacttatttgcaacttataa 48  Q
    |||||||||||||||||||||||||| |||||||    
T  12433570 ctgtttggataaacaacttatttgcagcttataa 12433537  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 13697959 - 13697926
Alignment:
Q  15 ctgtttggataaacaacttatttgcaacttataa 48  Q
    |||||||||||||||||||||||||| |||||||    
T  13697959 ctgtttggataaacaacttatttgcagcttataa 13697926  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 24030504 - 24030467
Alignment:
Q  101 ataaaataaagttaaattattttttgtataggttataa 138  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  24030504 ataaaataaagttaaattattttttggatatgttataa 24030467  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 40452229 - 40452281
Alignment:
Q  73 cttatatataagttatttctatag--aacaataaaataaagttaaattatttt 123  Q
    ||||| |||||| |||||||||||  || ||||||||||||||||||||||||    
T  40452229 cttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 40452281  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 28776855 - 28776887
Alignment:
Q  15 ctgtttggataaacaacttatttgcaacttata 47  Q
    |||||||||||||||||||||||||| ||||||    
T  28776855 ctgtttggataaacaacttatttgcagcttata 28776887  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 29845091 - 29845055
Alignment:
Q  12 gccctgtttggataaacaactt-atttgcaacttata 47  Q
    |||||||||||||||||||||| ||||||||||||||    
T  29845091 gccctgtttggataaacaacttaatttgcaacttata 29845055  T

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