View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571-INSERTION-19 (Length: 618)
Name: NF0571-INSERTION-19
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571-INSERTION-19 |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 8 - 543
Target Start/End: Original strand, 11551334 - 11551869
Alignment:
| Q |
8 |
gtctcttctatatgtttgtttcgtttcaatttgaaattctactattttctgttggctgaaacagtttcaggtcaccctttttctttcatacaaaataatg |
107 |
Q |
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| T |
11551334 |
gtctcttctatatgtttgtttcgtttcaatttgaaattctactattttctgttggctgaaacagtttcaggtcaccctttttctttcatacaaaataatg |
11551433 |
T |
|
| Q |
108 |
cagttaccatttttctttgattcattcctatctatcatatagagaggatgnnnnnnngagtaaaacttgtgcagaacctgtcaattgtaaaggcttttct |
207 |
Q |
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| T |
11551434 |
cagttaccatttttctttgattcattcctatctatcatatagagaggatgaaaaaaagagtaaaacttgtgcagaacctgtcaattgtcaaggcttttct |
11551533 |
T |
|
| Q |
208 |
tcccgcaccagcctctcttctttgtctcataactttcaatttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctgagccacaagat |
307 |
Q |
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| T |
11551534 |
tcccgcaccagcctctcttctttgtctcataactttcaatttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctgagccacaagat |
11551633 |
T |
|
| Q |
308 |
aaattttgtgtgaatgtcgatttgctttgtggtttccgttctctgctacaacaacatttattagcttggttttgatattatgtttctgttacatgataaa |
407 |
Q |
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| T |
11551634 |
aaattttgtgtgaatgtcgatttcctttgtggtttccgttctctgctacaacaacatttattagcttggttttgatattatgtttctgttacatgataaa |
11551733 |
T |
|
| Q |
408 |
accatatggcatcgtttaatccatgcagccgaccccgtttacaaggataagacttgattcttgttatttcagatacttgcctgttatatctttgttggca |
507 |
Q |
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| T |
11551734 |
accatatggcatcgtttaatccatgcagccgaccccgtttacaaggataagacttgattcttgttatttcagatacttgcctgttatatctttgttggta |
11551833 |
T |
|
| Q |
508 |
cctcttgctcttgggtctatgattttgattattcag |
543 |
Q |
| |
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| T |
11551834 |
cctcttgctcttgggtctatgattttgattcttcag |
11551869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 514
Target Start/End: Original strand, 11546489 - 11546979
Alignment:
| Q |
18 |
tatgtttgtttcgtttcaatttgaaattctactattttctgttggctgaaacagtttcaggtcaccctttttctttcatacaaaataatgcagttaccat |
117 |
Q |
| |
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|||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11546489 |
tatgtttgtttcattttaatttgaaattatactattttctgttggctgaaacagtttcaggtcaccctttttctttcttacaaaataatgcagttaccat |
11546588 |
T |
|
| Q |
118 |
ttttctttgattcattcctat-----ctatcatatagagaggatgnnnnnnngagtaaaacttgtgcagaacctgtcaattgtaaaggcttttcttcccg |
212 |
Q |
| |
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| T |
11546589 |
ttttctttgattcattcatatgatatctatcatatagagtggatgaaaaaaagagtaaaacttgtgcagaacctgtcat-------ggtttttcttccca |
11546681 |
T |
|
| Q |
213 |
caccagcctctcttctttgtctcataactttcaatttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctgagccacaagataaatt |
312 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | || |
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| T |
11546682 |
caccagcctctcttctttgtctcataaatttcaatttgaatgtccaaagtatgtagctcttcacagttccccaacaa---cctgagccacaagagatgtt |
11546778 |
T |
|
| Q |
313 |
ttgtgtgaatgtcgatttgctttgtggtttccgttctctgctacaacaacatttattagcttggttttgatattatgtttctgttacatgataaaaccat |
412 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||| |||||| ||||||||||||| || ||| |||| ||||| ||||||||||| | |
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| T |
11546779 |
ttgtgtgaatgtcaatttgttttgtggtttccgttctctgctacagtgacattttttagcttggtttttattttaagtttatgttatatgataaaacctt |
11546878 |
T |
|
| Q |
413 |
atggcatcgtttaatccatgcagccgaccccgtttacaaggataagacttgattcttgttatttcagatacttgcc-tgttatatctttgttggcacctc |
511 |
Q |
| |
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||||| ||||||||||||| || |||| || ||||||||||||| ||||| |||||||||||| |||||||||| ||||||||| || |||||||||| |
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| T |
11546879 |
atggcgtcgtttaatccattca-ccgatgccatttacaaggataaaacttggttcttgttattttggatacttgccttgttatatc-ttattggcacctc |
11546976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 11562147 - 11561998
Alignment:
| Q |
8 |
gtctcttctatatgtttgtttcgtttcaatttgaaattctactattttctgttggctgaaacagtttcaggtcaccctttttctttcatacaaaataatg |
107 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11562147 |
gtctcttctatatatttgtttcatttcaatttgaaattctactattttctcttggctgaaacagtttcaggtcaccctttttctttcatacaaaataatg |
11562048 |
T |
|
| Q |
108 |
cagttaccatttttctttgattcattcctatctatcatatagagaggatg |
157 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||||||||| ||||| |
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|
| T |
11562047 |
aagttaccatttttctttgattcattcatatcaatcatatagagtggatg |
11561998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 221 - 370
Target Start/End: Complemental strand, 11561957 - 11561814
Alignment:
| Q |
221 |
tctcttctttgtctcataactttca-atttgaatgttcaaagtatgtagctcttcacagttccccaacaattgcctgagccacaagataaattttgtgtg |
319 |
Q |
| |
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|||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||| || |||||| | ||||| |||||||||||| |
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| T |
11561957 |
tctcttctttgtctcatagatttcatatttgaaagttcaaattatgtagctcttcacagttccacatcaattgtc-------caagagaaattttgtgtg |
11561865 |
T |
|
| Q |
320 |
aatgtcgatttgctttgtggtttccgttctctgctacaacaacatttatta |
370 |
Q |
| |
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|||||| ||||| |||||||||| | ||||||||||||| || |||||||| |
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| T |
11561864 |
aatgtcaatttgttttgtggttttcattctctgctacaataatatttatta |
11561814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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