View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571-INSERTION-2 (Length: 438)
Name: NF0571-INSERTION-2
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571-INSERTION-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 5 - 438
Target Start/End: Original strand, 34675311 - 34675744
Alignment:
| Q |
5 |
acaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggc |
104 |
Q |
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| T |
34675311 |
acaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggc |
34675410 |
T |
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| Q |
105 |
acgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttcagagacaagttcagagacttcaaaaggaacttgattctgctaatgccgat |
204 |
Q |
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| T |
34675411 |
acgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttcagagacaagttcagagacttcaaaaggaacttgattctgctaatgccgat |
34675510 |
T |
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| Q |
205 |
cttcttcgctttgcttacaatgaaatctctccgaatacctctcttccacctcttcctcctcttgttgttccggcttcgtttcatcaatctcaaagacagt |
304 |
Q |
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| T |
34675511 |
cttcttcgctttgcttacaatgaaatctctccgaattcctctcttccacctcttcctcctcttgttgttccggcttcgtttcatcaatctcaaagacagt |
34675610 |
T |
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| Q |
305 |
ttagttcaagatttggtaatggaaatgttgatggaaatggattttactcttcttttccttatgctattccatggattaatgatacctcttatgaggatat |
404 |
Q |
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| T |
34675611 |
ttagttcaagatttggtaatggaaatgttgatggaaatggattttactcttcttttccttatgctattccatggattaatgatacctcttctgaggatat |
34675710 |
T |
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| Q |
405 |
aagtggaggtgtaggtggaagaggaggaggtgta |
438 |
Q |
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| T |
34675711 |
aagtggaggtgtaggtggaagaggaggaggtgta |
34675744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 33246367 - 33246317
Alignment:
| Q |
88 |
gcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggt |
138 |
Q |
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| T |
33246367 |
gcttatgaagcagaagcgcgtttgagagatcctgtttatggttgtgttggt |
33246317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 43583317 - 43583509
Alignment:
| Q |
22 |
agcaacgtcacaaagatcctcaacgaactcctccctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctg |
121 |
Q |
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| T |
43583317 |
agcaatgtcacaaagcttctcaatgaacttctccctcaccaaagggaggatgctgtgaactcccttgcttatgaagccgaagcacgagttagggatccag |
43583416 |
T |
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| Q |
122 |
tttatggttgtgttggtgctatctctttccttcagagacaagttcagagacttcaaaaggaacttgattctgctaatgccgatcttcttcgct |
214 |
Q |
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| T |
43583417 |
tttatggatgtgtaggagccatctcttttctacaaagacaagttcaaaggcttcaaaaggaactcgacgctgctaacaccgatcttcttcgct |
43583509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 12360732 - 12360610
Alignment:
| Q |
67 |
gaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttcagagacaagttc |
166 |
Q |
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|||||||||||||| || |||||||||||||| |||||| | | | |||||| ||||||||||| || ||||| || || |||| || ||||||||| |
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| T |
12360732 |
gaagatgcagtgaactctcttgcttatgaagctgaggcaaggataaaagatccagtttatggttgcgtcggtgccatttcagtcctccaaagacaagtta |
12360633 |
T |
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| Q |
167 |
agagacttcaaaaggaacttgat |
189 |
Q |
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| T |
12360632 |
ttaggctccaaaaggaacttgat |
12360610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 591287 - 591427
Alignment:
| Q |
64 |
agagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttcagagacaag |
163 |
Q |
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||||||||| | |||||||| || ||||||||||| || ||| | | | |||||| || |||||||||||||| ||||| ||| | ||||| |||||| |
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| T |
591287 |
agagaagatacggtgaattctctagcttatgaagctgaagcaaggattaaagatccagtgtatggttgtgttggagctatatctgtgcttcaaagacaac |
591386 |
T |
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| Q |
164 |
ttcagagacttcaaaaggaacttgattctgctaatgccgat |
204 |
Q |
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| T |
591387 |
tccttaagcttcaaaaggaactcgatgctacaaatgccgat |
591427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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