View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0571-INSERTION-20 (Length: 256)

Name: NF0571-INSERTION-20
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0571-INSERTION-20
NF0571-INSERTION-20
[»] chr3 (2 HSPs)
chr3 (127-256)||(49124042-49124171)
chr3 (8-134)||(49124225-49124350)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 49124171 - 49124042
Alignment:
Q  127 ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124171 ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag 49124072  T
Q  227 tgattcatagagatatgaaatcttcaaata 256  Q
    ||||||||||||||||||||||||||||||    
T  49124071 tgattcatagagatatgaaatcttcaaata 49124042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 49124350 - 49124225
Alignment:
Q  8 caagtatacaaaattcaaaattacaagctgttaacaaattaatgaacaattccgattggagaagttatagatcgttttcattctgcatcttaaaagtttt 107  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124350 caagtatacaaaattcaaaattacaa-ctgttaacaaattaatgaacaattccgattggagaagttatagatcgttttcattctgcatcttaaaagtttt 49124252  T
Q  108 gtccccttaacaaagtttattatgaat 134  Q
    |||||||||||||||||||||||||||    
T  49124251 gtccccttaacaaagtttattatgaat 49124225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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