View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0571-INSERTION-4 (Length: 687)

Name: NF0571-INSERTION-4
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0571-INSERTION-4
NF0571-INSERTION-4
[»] chr1 (1 HSPs)
chr1 (7-687)||(46343189-46343869)


Alignment Details
Target: chr1 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 7 - 687
Target Start/End: Complemental strand, 46343869 - 46343189
Alignment:
Q  7 agatatcaaataagaatctttatttgatggcattttgctaagatgtcgtttnnnnnnnnnnnnnnnnnnnnnnncatttgcagtatttagaagactacaa 106  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||                       ||||||||||||||||||||||||||    
T  46343869 agatatcaaataagaatctttatttggtggcattttgctaagatgtcgtttaaaattaaaattaaaaacaaaaacatttgcagtatttagaagactacaa 46343770  T
Q  107 cactctcgtaagcttaggttgtgtgctataactatatgtacttgttgagacttgagaatcaaacaaaactcaagcttggaattgtatagagcaataaatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46343769 cactctcgtaagcttaggttgtgtgctataactatatgtacttgttgagacttgagaatcaaacaaaactcaagcttggaattgtatagagcaataaatt 46343670  T
Q  207 tgtaagcatagcccttttggtgaagtgcatataaaatagacattagcaaaattaaaaatacaattgtccagccaggatttaataaaataaatcctggatt 306  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46343669 tgtaagcatagtccttttggtgaagtgcatataaaatagacattagcaaaattaaaaatacaattgtccagccaggatttaataaaataaatcctggatt 46343570  T
Q  307 gtcagaattcagaaataaaccaaagagaaagcatacagatagatgataaatgtctgatnnnnnnntttttcatacagaaagcatggcttacattagttgc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  46343569 gtcagaattcagaaataaaccaaagagaaagcatacagatagatgataaatgtctgataaaatttattttcatacagaaagcatggcttacattagttgc 46343470  T
Q  407 atgtcatgacaataagcaactnnnnnnntaaacaattattttggtgtctaaatgtgtgaggctgtgttacaatactccttaaatatataaaaattataag 506  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46343469 atgtcatgacaataagcaactaaaaaaataaacaattattttggtgtctaaatgtgtgaggctgtgttacaatactccttaaatatataaaaattataag 46343370  T
Q  507 aacatcattgaagtatcactattagtaatttgatgattatattgactaatagaagacacattcgaccatgatgtttttatagtttgttttattcaaggac 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46343369 aacatcattgaagtatcactattagtaatttgatgattatattgactaatagaagacacattcgaccatgatgtttttatagtttgttttattcaaggac 46343270  T
Q  607 taagaatggctcctaaaacattcaatgaccatttaattagttaaaattggccgggtttgcatttcaatattgaagcactct 687  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46343269 taagaatggctcctaaaacattcaatgaccatttaattagttaaaattggccgggtttgcatttcaatattgaagcactct 46343189  T

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