View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571-INSERTION-6 (Length: 631)
Name: NF0571-INSERTION-6
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571-INSERTION-6 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 317 - 625
Target Start/End: Original strand, 44826288 - 44826594
Alignment:
| Q |
317 |
agctatatggagtcagatcctttcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgcc |
416 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| || || ||||||||||||||||||||||||||| || | |
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| T |
44826288 |
agctatatggagtcagatcctgtcaaaattgctgtggaaggtgtggaaagattcaaggaagaagaccatgatcttataattgttgataccagtgggcggc |
44826387 |
T |
|
| Q |
417 |
acaaacaagaagctgccctatttgaagaaatgcgtcaactttcagaagcaacggtatttattaatgtttatactatatgcatttca-aactattacgtaa |
515 |
Q |
| |
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||||||||||||| |||| |||||||||||||| |||||||| ||||| ||||||| | | ||||| | |||||||||||| | | ||||| | || |
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| T |
44826388 |
acaaacaagaagcatccctttttgaagaaatgcgccaactttcggaagctacggtatatct---tgttttttctatatgcatttgatatctatttccaaa |
44826484 |
T |
|
| Q |
516 |
agccaataagttgtaatatattttctctgtgttgttcagaagccagatcttgttgtatttgttatggatagcagtattggtcaggctgcttttggtcagg |
615 |
Q |
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||||||||| | |||||| ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44826485 |
agccaataaatcataatatcttttctctgcgttgttcagaaaccagatcttgttatatttgttatggatagcagtattggtcaggctgcttttaatcagg |
44826584 |
T |
|
| Q |
616 |
cgcaagcatt |
625 |
Q |
| |
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| |||||||| |
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| T |
44826585 |
cccaagcatt |
44826594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 159 - 325
Target Start/End: Original strand, 44823924 - 44824087
Alignment:
| Q |
159 |
caggttctggaaagactacaacttgtacaaaatacgcccattattatcagaagaaaggatggaagccagcttaattagtatgtgcagatacatttagagc |
258 |
Q |
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||||||||||||| |||||||| ||||||||||| || |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
44823924 |
caggttctggaaaaactacaacatgtacaaaatatgcgcattgttatcagaagaaaggatggaagccagctt---tagtgtgtgcagatacatttagagc |
44824020 |
T |
|
| Q |
259 |
tgctgcatttgatcaattgaagctcaatgccactaaagctaaaattcctttttgtggaagctatatg |
325 |
Q |
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|| |||||||||||||||||||| ||||| ||||||||||| || ||||||| |||||| |||||| |
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| T |
44824021 |
tggtgcatttgatcaattgaagcaaaatgctactaaagctaagatccctttttatggaaggtatatg |
44824087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 44823050 - 44823111
Alignment:
| Q |
29 |
tctttcgttcccaagaaaggaaaaacaagtgttgtcatgttcgttggtttacaaggtttgtt |
90 |
Q |
| |
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||||| |||||||| | || ||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
44823050 |
tcttttgttcccaaaagagaaaaaacaagtgttgttatgtttgttggtttacaaggtttgtt |
44823111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 317 - 626
Target Start/End: Complemental strand, 2203823 - 2203516
Alignment:
| Q |
317 |
agctatatggagtcagatcctttcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgcc |
416 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||| || | |
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| T |
2203823 |
agctatatggagtcagatcctgtgaaaattgctgtggaaggtgtggaaagattcaagaaagaaaactgtgatcttataattgttgatactagtgggcggc |
2203724 |
T |
|
| Q |
417 |
acaaacaagaagctgccctatttgaagaaatgcgtcaactttcagaagcaacggtatttattaatgtttatactatatgcatttcaaactattacgtaaa |
516 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| | |||| ||| |||||||| || || | ||| |
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| T |
2203723 |
acaaacaagaagctgctctttttgaagaaatgcgtcaagtttcagaagcaacggtatt---ttctgttgatattatatgcaccaatgtctgtttccaaaa |
2203627 |
T |
|
| Q |
517 |
gccaataagttgtaatatattttctctgtgttg-ttcagaagccagatcttgttgtatttgttatggatagcagtattggtcaggctgcttttggtcagg |
615 |
Q |
| |
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|||| || | |||||| ||| | | |||| ||||||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
2203626 |
gccagtagtctctaatatctttcatgtccgttgattcagaaaccagatcttgttatctttgtcatggatagcagtattggtcaggctgcttttgatcagg |
2203527 |
T |
|
| Q |
616 |
cgcaagcattt |
626 |
Q |
| |
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| ||||||||| |
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|
| T |
2203526 |
cccaagcattt |
2203516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 179 - 318
Target Start/End: Complemental strand, 2204930 - 2204794
Alignment:
| Q |
179 |
acttgtacaaaatacgcccattattatcagaagaaaggatggaagccagcttaattagtatgtgcagatacatttagagctgctgcatttgatcaattga |
278 |
Q |
| |
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|||||||||||||| || |||| |||| |||||||| |||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| |||| |
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| T |
2204930 |
acttgtacaaaatatgcattttatcatcaaaagaaaggctggaagccagctc---tagtatgtgcagatacattcagagctggtgcgtttgatcagttga |
2204834 |
T |
|
| Q |
279 |
agctcaatgccactaaagctaaaattcctttttgtggaag |
318 |
Q |
| |
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||| ||||| || |||||||| || ||||| | |||||| |
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| T |
2204833 |
agcaaaatgcaaccaaagctaagatccctttctatggaag |
2204794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 2205262 - 2205214
Alignment:
| Q |
37 |
tcccaagaaaggaaaaacaagtgttgtcatgttcgttggtttacaaggt |
85 |
Q |
| |
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|||||| ||||||||| | |||||||||||||||||||||||||||||| |
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| T |
2205262 |
tcccaaaaaaggaaaagctagtgttgtcatgttcgttggtttacaaggt |
2205214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 341 - 459
Target Start/End: Complemental strand, 33167778 - 33167657
Alignment:
| Q |
341 |
aaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgccacaaacaa---gaagctgccctat |
437 |
Q |
| |
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||||||| |||||||| |||||||| ||||||||| |||||| ||||||||||| ||||||||||||||| | ||||||||| |||| ||| || | |
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| T |
33167778 |
aaaattgtggtggaaggcgtggagaggttcaaggaagaaaactatgatcttataagtgttgataccagtgggggtcacaaacaagaggaagatgctcttt |
33167679 |
T |
|
| Q |
438 |
ttgaagaaatgcgtcaactttc |
459 |
Q |
| |
|
||||||||||||| ||| |||| |
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| T |
33167678 |
ttgaagaaatgcgccaagtttc |
33167657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 339 - 479
Target Start/End: Complemental strand, 33116080 - 33115938
Alignment:
| Q |
339 |
tcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgccacaaac---aagaagctgccct |
435 |
Q |
| |
|
|||||||||| ||| |||||||||| |||| |||||| ||| |||||||||||||||||||||| ||||| | ||||||| |||||| ||| || |
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| T |
33116080 |
tcaaaattgccgtgaaaggtgtggacagatgcaaggaggaaa-ctgtgatcttataattgttgatgtgagtggggggcacaaacaagaagaagatgctct |
33115982 |
T |
|
| Q |
436 |
atttgaagaaatgcgtcaactttcagaagcaacggtatttatta |
479 |
Q |
| |
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|||||||||| | ||| ||||| |||||||||||||||||| |
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| T |
33115981 |
tattgaagaaattcaccaagtttcaaaagcaacggtatttatta |
33115938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 33168678 - 33168631
Alignment:
| Q |
234 |
tagtatgtgcagatacatttagagctgctgcatttgatcaattgaagc |
281 |
Q |
| |
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|||| ||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
33168678 |
tagtttgtgcagatacatttagagatggtgcatttgatcaattgaagc |
33168631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 33159341 - 33159294
Alignment:
| Q |
234 |
tagtatgtgcagatacatttagagctgctgcatttgatcaattgaagc |
281 |
Q |
| |
|
|||| ||||||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
33159341 |
tagtttgtgcagatgcatttagagatggtgcatttgatcaattgaagc |
33159294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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