View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0571-INSERTION-7 (Length: 707)
Name: NF0571-INSERTION-7
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0571-INSERTION-7 |
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| [»] scaffold0272 (4 HSPs) |
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Alignment Details
Target: scaffold0272 (Bit Score: 120; Significance: 5e-61; HSPs: 4)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 473 - 699
Target Start/End: Original strand, 6280 - 6512
Alignment:
| Q |
473 |
acatatttaatactgaagatcgacatggaaaacatcaaatacttaaacaagatgtagagcgttgatatccccacgatcgctgcttctgtgtttgtaacca |
572 |
Q |
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| T |
6280 |
acatatttaatactgaagatcgacatggaaaacatcaaatacttaaacaagatgtagagcatgtatatccccacgatcgctgcttctacgtttgtaacca |
6379 |
T |
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| Q |
573 |
tgtcatt-------gcttccctctaccacatagactgttgtttctctatttgtgcaagtaacaaaaagttgaagttagctgaaacgatatgacttgtgca |
665 |
Q |
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| T |
6380 |
tgtcgttgccgctcgcctccctcttctacatagactgttgtttctctatttctgcaggttac-aaaagttgaagtaagattaaaccatatgagttgtgca |
6478 |
T |
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| Q |
666 |
ttggttatctttgtgttgcatggaaaagtcatat |
699 |
Q |
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| T |
6479 |
ttatttgtctttgtgttgcatggaaaagtcatat |
6512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 226 - 419
Target Start/End: Original strand, 5519 - 5710
Alignment:
| Q |
226 |
aattcacattgaggtgatcactaaaattaattaaagcggttattagtaataatttttggtgtattgattcttgccatgaacttggtgttcgaaaaataaa |
325 |
Q |
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| T |
5519 |
aattcacattaaggtgaccactaaaattaattaaagtggttattagtaataattttttgtgtattgattattg-ctggatcttgattttcaaaaactaaa |
5617 |
T |
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| Q |
326 |
gcaaaattacattttttgaatgtcaagtttttgcgataatcaaaccactgaaataattggagtctttaaattttttccatcttttgttgaataa |
419 |
Q |
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| T |
5618 |
gtaaaattatagtttttgaatgt-aagttttggcgaaaatgaaaccactgaaataattggagtctctaaattttttcaatcttttgttgaataa |
5710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 5373 - 5499
Alignment:
| Q |
109 |
caaaaagacttgggcaggaggaaaaagtcccacatcgatggtgcatgaacaaccaagagctaggaaggtttacttataaaaagccttgaatacatttaag |
208 |
Q |
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| T |
5373 |
caaaaatacatgggcaggaggaaaaagacccacatcgatggtgcatgaacaaccaagag----gaaggtttacttataaaaagccttgaatacatttaag |
5468 |
T |
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| Q |
209 |
ttaatatcgaacccaataattcacattgagg |
239 |
Q |
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| T |
5469 |
ttaatattgtacccaataattcacattgagg |
5499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 5222 - 5269
Alignment:
| Q |
8 |
ggatccatttaaaaatgagatgcttaaatgagactcaaagtcttataa |
55 |
Q |
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| T |
5222 |
ggatccatttcaaaatgagatgcttaaatgagacgctgagtcttataa |
5269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 484
Target Start/End: Complemental strand, 21139272 - 21139233
Alignment:
| Q |
445 |
tatatttgaaacggcactcctcttttccacatatttaata |
484 |
Q |
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| T |
21139272 |
tatatttgaaatgacactcctcttttccacatatttaata |
21139233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 45283025 - 45283058
Alignment:
| Q |
7 |
aggatccatttaaaaatgagatgcttaaatgaga |
40 |
Q |
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| T |
45283025 |
aggatccatttaaaaatgagatgtttaaatgaga |
45283058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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