View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0571-INSERTION-8 (Length: 749)

Name: NF0571-INSERTION-8
Description: NF0571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0571-INSERTION-8
NF0571-INSERTION-8
[»] chr3 (19 HSPs)
chr3 (367-749)||(6933585-6933954)
chr3 (261-370)||(6933976-6934085)
chr3 (126-205)||(6934079-6934162)
chr3 (6-75)||(39587109-39587178)
chr3 (6-77)||(47647454-47647525)
chr3 (6-75)||(26501730-26501799)
chr3 (6-75)||(41193277-41193346)
chr3 (6-75)||(32530343-32530412)
chr3 (6-75)||(40940290-40940359)
chr3 (10-75)||(227899-227964)
chr3 (6-75)||(31764726-31764795)
chr3 (6-75)||(36402354-36402423)
chr3 (6-75)||(39353668-39353737)
chr3 (6-75)||(41182438-41182507)
chr3 (6-77)||(6936962-6937032)
chr3 (6-75)||(10508747-10508816)
chr3 (6-67)||(53816481-53816542)
chr3 (10-72)||(149848-149910)
chr3 (6-60)||(47013293-47013347)
[»] chr4 (30 HSPs)
chr4 (6-75)||(168052-168121)
chr4 (6-75)||(6964011-6964080)
chr4 (6-75)||(2013246-2013315)
chr4 (6-75)||(15542362-15542431)
chr4 (6-75)||(33281623-33281692)
chr4 (10-75)||(38217810-38217875)
chr4 (6-75)||(45925129-45925198)
chr4 (10-75)||(49374853-49374918)
chr4 (6-75)||(55137199-55137268)
chr4 (6-75)||(56463190-56463259)
chr4 (6-72)||(38550804-38550870)
chr4 (10-67)||(4189428-4189485)
chr4 (6-75)||(16024403-16024472)
chr4 (6-67)||(28780303-28780364)
chr4 (6-75)||(31093644-31093713)
chr4 (6-75)||(35159258-35159327)
chr4 (6-67)||(35319409-35319470)
chr4 (6-75)||(40728566-40728635)
chr4 (6-67)||(45229614-45229675)
chr4 (6-75)||(45462774-45462843)
chr4 (6-75)||(52416464-52416533)
chr4 (6-73)||(4048673-4048740)
chr4 (8-75)||(9035632-9035699)
chr4 (6-75)||(28310416-28310485)
chr4 (6-75)||(30004094-30004163)
chr4 (10-75)||(51539154-51539219)
chr4 (6-75)||(52501946-52502015)
chr4 (6-75)||(1603322-1603391)
chr4 (6-75)||(16452488-16452556)
chr4 (6-75)||(5419387-5419456)
[»] chr5 (20 HSPs)
chr5 (6-77)||(3557158-3557229)
chr5 (9-75)||(2605870-2605936)
chr5 (6-75)||(8298781-8298850)
chr5 (6-75)||(25976667-25976736)
chr5 (6-75)||(27114841-27114910)
chr5 (6-75)||(38678993-38679062)
chr5 (6-75)||(8735232-8735301)
chr5 (6-75)||(12785695-12785764)
chr5 (6-75)||(8197914-8197983)
chr5 (6-75)||(12724212-12724281)
chr5 (6-75)||(13821615-13821684)
chr5 (6-75)||(16513120-16513189)
chr5 (6-75)||(18809508-18809577)
chr5 (6-75)||(20337023-20337092)
chr5 (6-77)||(9714828-9714899)
chr5 (9-75)||(37029831-37029897)
chr5 (6-75)||(11719449-11719518)
chr5 (6-75)||(37883981-37884050)
chr5 (6-75)||(26279593-26279662)
chr5 (6-75)||(37013364-37013433)
[»] chr8 (20 HSPs)
chr8 (6-75)||(20092414-20092483)
chr8 (6-75)||(8239518-8239587)
chr8 (6-75)||(11076768-11076837)
chr8 (6-75)||(13545784-13545853)
chr8 (6-75)||(13678620-13678689)
chr8 (6-75)||(31700576-31700645)
chr8 (6-75)||(39259833-39259902)
chr8 (6-75)||(43098057-43098126)
chr8 (6-77)||(6347848-6347919)
chr8 (6-75)||(35683545-35683614)
chr8 (9-75)||(42131436-42131502)
chr8 (6-75)||(37098870-37098939)
chr8 (6-75)||(39318127-39318196)
chr8 (7-75)||(585927-585995)
chr8 (7-75)||(627928-627996)
chr8 (18-75)||(28249281-28249338)
chr8 (10-75)||(32947563-32947628)
chr8 (32-75)||(32338371-32338414)
chr8 (18-75)||(23143670-23143727)
chr8 (6-75)||(40104780-40104849)
[»] chr1 (22 HSPs)
chr1 (6-75)||(23983551-23983620)
chr1 (6-75)||(12529003-12529072)
chr1 (6-75)||(42882130-42882199)
chr1 (6-75)||(44497022-44497091)
chr1 (6-75)||(52631875-52631944)
chr1 (6-75)||(14586867-14586936)
chr1 (6-75)||(22859208-22859277)
chr1 (6-75)||(41724016-41724085)
chr1 (6-75)||(41899807-41899876)
chr1 (6-75)||(48963865-48963934)
chr1 (6-75)||(12700083-12700152)
chr1 (6-75)||(27217359-27217428)
chr1 (6-75)||(29961935-29962004)
chr1 (6-75)||(33801869-33801938)
chr1 (7-75)||(44754939-44755007)
chr1 (6-75)||(41086955-41087023)
chr1 (6-75)||(41091723-41091791)
chr1 (8-75)||(38861230-38861297)
chr1 (18-75)||(50261516-50261573)
chr1 (6-60)||(37952764-37952818)
chr1 (6-72)||(49852267-49852333)
chr1 (12-75)||(3517130-3517193)
[»] chr7 (10 HSPs)
chr7 (6-75)||(25528639-25528708)
chr7 (6-75)||(33951472-33951541)
chr7 (6-75)||(44866576-44866645)
chr7 (6-75)||(43458695-43458764)
chr7 (6-73)||(34847354-34847421)
chr7 (6-67)||(14816188-14816249)
chr7 (6-67)||(15263184-15263245)
chr7 (10-77)||(35795001-35795068)
chr7 (10-75)||(46255403-46255468)
chr7 (14-75)||(36311618-36311679)
[»] chr6 (5 HSPs)
chr6 (6-75)||(11975523-11975592)
chr6 (6-75)||(16395858-16395927)
chr6 (6-75)||(31722424-31722493)
chr6 (15-75)||(439562-439622)
chr6 (6-75)||(304294-304363)
[»] chr2 (15 HSPs)
chr2 (6-75)||(1115641-1115710)
chr2 (6-67)||(30490299-30490360)
chr2 (6-75)||(38208869-38208938)
chr2 (6-75)||(44760584-44760653)
chr2 (6-67)||(45117624-45117685)
chr2 (6-61)||(17137233-17137288)
chr2 (6-75)||(15912248-15912317)
chr2 (6-75)||(45234766-45234835)
chr2 (6-77)||(1209446-1209517)
chr2 (9-72)||(7941062-7941125)
chr2 (6-73)||(38703116-38703183)
chr2 (31-75)||(17309498-17309542)
chr2 (14-77)||(16415042-16415105)
chr2 (7-77)||(16251722-16251792)
chr2 (6-75)||(31993608-31993676)
[»] scaffold0121 (1 HSPs)
scaffold0121 (20-77)||(46976-47033)
[»] scaffold0209 (1 HSPs)
scaffold0209 (7-75)||(14688-14756)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 367 - 749
Target Start/End: Complemental strand, 6933954 - 6933585
Alignment:
Q  367 tcaataatagtccctacttatcataatttgatttgtgtacttagaatatactctatatagattgccgaataccttaaaaccaaattaacactgttctggt 466  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6933954 tcaataatagtccctacttatcataatttgatttgtgtacttggaatatactctatatagattgccgaataccttaaaaccaaattaacactgttctggt 6933855  T
Q  467 aattgtgcaaagattactttatttattcactccatttttgttttgagatatatacatgatgaaccaacaatacgtatcctttctaatgtatttattattc 566  Q
    |||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6933854 aattgtgcaaagattactt-------------catttttgttttgagatatatacatgatgaaccaacaatacgtatcctttctaatgtatttcttattc 6933768  T
Q  567 tgcagtaccctgaatattcgaggttgtagataattttttcgcgtgagaagtctttctcaatttggttactttggtatcaaactaatgctgaaactacaag 666  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6933767 tgcagtaccctgaatattcgaggttgtagataattttttcgtgtgagaagtctttctcaatttggttactttggtatcaaactaatactgaaactacaag 6933668  T
Q  667 attaacatgttaagaagacagttcaaagttaaaatttgcagctgatttttggcttctcggttttgttggaaaacttttaaaaa 749  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6933667 aataacatgtcaagaagacagttcaaagttaaaatttgcagctgatttttggcttctcggttttgttggaaaacttttaaaaa 6933585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 6934085 - 6933976
Alignment:
Q  261 acaaagaagttcaatgctactcaaaattattactgtaaaatttgcttcatattgcaaactattctatttctaaggacctactctgctgaagacttccaat 360  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6934085 acaatgaagttcaatgctactcaaaattattactgtaaaatttgcttcatattgcaaactattctatttctaaggacctactctgctgaagacttccaat 6933986  T
Q  361 attttttcaa 370  Q
    ||||||||||    
T  6933985 attttttcaa 6933976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 6934162 - 6934079
Alignment:
Q  126 taggtgtgaactgaaaacaaatggatccaggtgtgagt----atgcagaagtttaacaataattctgctattcttttacaatga 205  Q
    |||||| |||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||    
T  6934162 taggtgggaactgaaaacaaatggatccaggtgtgagtgagtatgcagaagtttaacaataattctgctattcttttacaatga 6934079  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 39587178 - 39587109
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||    
T  39587178 cacatgaccctcagatgaaccacacttcgttgcagcgcggttccatcctcattgaccattcatacaaacc 39587109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 47647525 - 47647454
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacctt 77  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  47647525 cacatgaccctcagatgaaccgcacttcgttgcagcgtggttccatcctcattgaccgttcatacaaacctt 47647454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 26501730 - 26501799
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||| |||||||    
T  26501730 cacatgaccctcagatgaaccgcgcttcgtttcagcgcggttccatcctcattgaccattcatacaaacc 26501799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 41193277 - 41193346
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||    
T  41193277 cacatgaccctcagatgaactgcacatcgttgcagtgcggttccatcctcattgaccgttcatacaaacc 41193346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 32530412 - 32530343
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || | |||||||    
T  32530412 cacatgaccctcagatgaaccgcacttcgttgcagcgcggttctatcctcattgaccgtttatacaaacc 32530343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 40940359 - 40940290
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||| |||||||    
T  40940359 cacatgaccctcagatgaaccgcgcttcgttgcagcgcggttccatcctcactgaccgttcatacaaacc 40940290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 227964 - 227899
Alignment:
Q  10 tgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||| ||||||||| ||||||||||||| |||||||||||||||||||||| |||| |||||||    
T  227964 tgacccacagatgaaccgcacttcgttgcaacgcggttccatcctcattgaccgttcatacaaacc 227899  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 31764726 - 31764795
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||| |||| |||||||    
T  31764726 cacatgacccccagatgaaccgcacttctttgcagtgcggttccatcctcattgaccgttcatacaaacc 31764795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 36402354 - 36402423
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || |||||||||||||  |||||||||||||||||| |||| |||||||    
T  36402354 cacatgaccctcagatgaaccgcgcttcgttgcagcgaagttccatcctcattgaccgttcatacaaacc 36402423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 39353737 - 39353668
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||| |||||| |||||| ||||||||||||||||| ||||||||||| |||| |||||||    
T  39353737 cacatgaccctcaaatgaaccgcacttagttgcagcgcggttccagcctcattgaccgttcatacaaacc 39353668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 41182507 - 41182438
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| |  ||||||||||| ||||||||||||||||||||| |||| |||||||    
T  41182507 cacatgaccctcagatgaaccgtgcttcgttgcagtgcggttccatcctcattgaccgttcatacaaacc 41182438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 6937032 - 6936962
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacctt 77  Q
    |||||| |||| |||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||||    
T  6937032 cacatggcccttagatgaaccgcacttcgttgcagcgcggtt-catcctcattgaccgttcatacaaacctt 6936962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 10508747 - 10508816
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||| |||||||| || |||||||||| ||||||||||||||||||| || |||| |||||||    
T  10508747 cacatgaccctaagatgaaccgcgcttcgttgcaacgcggttccatcctcattggccgttcatacaaacc 10508816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 53816542 - 53816481
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattca 67  Q
    |||||||||||||||||||| || |||| |||||||||||||||||| ||||||||| ||||    
T  53816542 cacatgaccctcagatgaaccgctcttcattgcagcgcggttccatcttcattgaccgttca 53816481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 149910 - 149848
Alignment:
Q  10 tgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaa 72  Q
    |||||||||||||||| || ||| |||||| | |||||||||||||||||||| |||| ||||    
T  149910 tgaccctcagatgaaccgcgctttgttgcaacacggttccatcctcattgaccgttcatacaa 149848  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 47013293 - 47013347
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattga 60  Q
    ||||| |||||||||||||| ||  || |||||||||||||||||||||||||||    
T  47013293 cacataaccctcagatgaaccgcgatttgttgcagcgcggttccatcctcattga 47013347  T

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Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 168052 - 168121
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  168052 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 168121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 6964080 - 6964011
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||    
T  6964080 cacatgactctcagatgaaccgcacttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 6964011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 2013246 - 2013315
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| | |||| |||||||    
T  2013246 cacatgaccctcagatgaacctcacttcgttgcagcgcggttccatcctcattgatcgttcatacaaacc 2013315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 15542362 - 15542431
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| |||| |||||||    
T  15542362 cacatgaccctcaaatgaaccgcacttcgttgcagcacggttccatcctcattgaccgttcatacaaacc 15542431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 33281692 - 33281623
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  33281692 cacatgacccttagatgaaccgcacttcgttgcagcgcggttccatcctcattcaccgttcatacaaacc 33281623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 38217810 - 38217875
Alignment:
Q  10 tgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| |||||||    
T  38217810 tgaccctcagatgaaccgcacttcgtagcagcgcggttccatcctcattgaccgttcatacaaacc 38217875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 45925198 - 45925129
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||| |||||||    
T  45925198 cacatgaccctcagatgaactgcacttcgttgcagcgtggttccatcttgattgaccgttcatacaaacc 45925129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 49374918 - 49374853
Alignment:
Q  10 tgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||    
T  49374918 tgaccctcagatgaaccgcacttcgttgcagcgcagttccatcctcattgaccatttatacaaacc 49374853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 55137268 - 55137199
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  55137268 cacatgtccctcagatgaaccgcgcttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 55137199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 56463190 - 56463259
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || |||| |||||||    
T  56463190 cacatgtccctcagatgaaccgcacttcgttgcagcgcggttccatcctcattgcccgttcatacaaacc 56463259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 38550804 - 38550870
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaa 72  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || |||| ||||    
T  38550804 cacatgacccccagatgaaccgcacttcgttgcagcgcggttccatcctcattggccgttcatacaa 38550870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 4189428 - 4189485
Alignment:
Q  10 tgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattca 67  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  4189428 tgacccacagatgaaccgcacttcgttgcagcgcggttccatcctcattgaccgttca 4189485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 16024472 - 16024403
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||| ||| || ||||||||||||||||||||||||||||||||  |||| |||||||    
T  16024472 cacatgaccctcagataaaccgcgcttcgttgcagcgcggttccatcctcattgactgttcatacaaacc 16024403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 28780303 - 28780364
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattca 67  Q
    |||||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||||    
T  28780303 cacatgaccctcagatgaaccgcgcttcgttgcatcgcggttccatcctcattgaccgttca 28780364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 31093713 - 31093644
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||||||||||| | |||| |||||||    
T  31093713 cacatgaccctcagatgaaccgcgcttcgttacagcgcggttccatcctcattgatcgttcatacaaacc 31093644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 35159327 - 35159258
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||  || ||||||||||||||||||||||||| ||||||| |||| |||||||    
T  35159327 cacatgaccctcagatgaatcgcgcttcgttgcagcgcggttccatccttattgaccgttcatacaaacc 35159258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 35319409 - 35319470
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattca 67  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||    
T  35319409 cacatgaccctcagatgaaccgcacttcattgtagcgcggttccatcctcattgaccgttca 35319470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 40728635 - 40728566
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||  || ||||||||||||| ||||||||||||||||||| |||| |||||||    
T  40728635 cacatgaccctcagatgaatcgcgcttcgttgcagcgtggttccatcctcattgaccgttcatacaaacc 40728566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 45229675 - 45229614
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattca 67  Q
    |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||||    
T  45229675 cacatgaccctcagatgaaccgcgctttgttgcagcgcggttccatcctcattgaccgttca 45229614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 45462843 - 45462774
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || |||| ||||||||| |||||||||||||||||| |||| |||||||    
T  45462843 cacatgaccctcagatgaaccgcgcttcattgcagcgcagttccatcctcattgaccgttcatacaaacc 45462774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 52416464 - 52416533
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||| |||||||||| || ||||||||||||||||||||||| ||||||||| |||| |||||||    
T  52416464 cacatgaccatcagatgaaccgcgcttcgttgcagcgcggttccatcatcattgaccgttcatacaaacc 52416533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 4048740 - 4048673
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaa 73  Q
    |||||||||| || |||||| ||||||||||||||||||| |||||||||||||||| |||| |||||    
T  4048740 cacatgacccgcaaatgaaccgcacttcgttgcagcgcggctccatcctcattgaccgttcatacaaa 4048673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 9035632 - 9035699
Alignment:
Q  8 catgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||| |||||| || ||||||||||||||||||||||||||||||| | |||| |||||||    
T  9035632 catgaccctcaaatgaaccgcgcttcgttgcagcgcggttccatcctcattgatcgttcatacaaacc 9035699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 28310416 - 28310485
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||| ||||||  |||||| |||||||||||| ||||||||||||||| |||| |||||||    
T  28310416 cacatgaccctcaaatgaaccacacttctttgcagcgcggtaccatcctcattgaccgttcatacaaacc 28310485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 30004163 - 30004094
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||| |||||  | |||| ||||||||||||||||||||||||||||| |||| |||||||    
T  30004163 cacatgaccctcatatgaatcgtactttgttgcagcgcggttccatcctcattgaccgttcatacaaacc 30004094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 51539219 - 51539154
Alignment:
Q  10 tgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||| |||||| || |||||||||||||||||||||||||| |||||| |||| |||||||    
T  51539219 tgaccctcaaatgaaccgcccttcgttgcagcgcggttccatcctcgttgaccgttcatacaaacc 51539154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 52502015 - 52501946
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || ||||||||||||| |||| |||||| ||||||| |||| |||||||    
T  52502015 cacatgaccctcagatgaaccgcgcttcgttgcagcgtggtttcatcctaattgaccgttcatacaaacc 52501946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 1603391 - 1603322
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||| |||||||||  |||||| ||||||||||| |||||| ||||||||| |||| |||||||    
T  1603391 cacatgacccccagatgaacatcacttctttgcagcgcggatccatcatcattgaccgttcatacaaacc 1603322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 16452556 - 16452488
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||| |||||||| ||||||||||||||| |  ||||||||||||||||| |||| |||||||    
T  16452556 cacatgaccct-agatgaaccgcacttcgttgcagcacaattccatcctcattgaccgttcatacaaacc 16452488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 5419456 - 5419387
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||| ||||||||  |||||  |||||||| | |||||||||| |||||| |||| |||||||    
T  5419456 cacatgacccttagatgaaccacactttattgcagcgtgattccatcctcgttgaccgttcatacaaacc 5419387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 3557229 - 3557158
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacctt 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||    
T  3557229 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgatcgttcatacaaacctt 3557158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 2605870 - 2605936
Alignment:
Q  9 atgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||    
T  2605870 atgaccctcagatgaaccgcacttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 2605936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 8298781 - 8298850
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  8298781 cacatgaccctcagatgaaccgcgcttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 8298850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 25976667 - 25976736
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||    
T  25976667 cacatgacccccagatgaaccgcacttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 25976736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 27114910 - 27114841
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||    
T  27114910 cacatgaccctcagatgaaccgtacttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 27114841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 38678993 - 38679062
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| |||||||    
T  38678993 cacatgaccctcagatgaactgcgcttcattgcagcgcggttccatcctcattgaccgttcatacaaacc 38679062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 8735301 - 8735232
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| || | |||||||    
T  8735301 cacatgaccctcagatgaaccgcgcttcgttgcagcgcggttccatcctcattgaccgtttatacaaacc 8735232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 12785764 - 12785695
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| |||| |||||||    
T  12785764 cacatgaccctcagatgaaccgcgcttcgttgcagcgcggttccatccttattgaccgttcatacaaacc 12785695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 8197983 - 8197914
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||| |||||| |||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||    
T  8197983 cacaggaccctaagatgaaccgcacttcgttgcagcgcggttccatccacattgaccgttcatacaaacc 8197914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 12724281 - 12724212
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || |||| |||||||||||||||||||| ||||||| |||| |||||||    
T  12724281 cacatgaccctcagatgaaccgcgcttcattgcagcgcggttccatccttattgaccgttcatacaaacc 12724212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 13821615 - 13821684
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || |||| ||| |||||||||||||||||||||||| |||| |||||||    
T  13821615 cacatgaccctcagatgaaccgcgcttcattgtagcgcggttccatcctcattgaccgttcatacaaacc 13821684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 16513120 - 16513189
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||||||||||||  |||| |||||||    
T  16513120 cacatgaccctcggatgaaccgcgcttcgttgcagcgcggttccatcctcattgactgttcatacaaacc 16513189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 18809577 - 18809508
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| |  |||||||||||||| |||||||||||||||||| |||| |||||||    
T  18809577 cacatgaccctcagatgaaccgtgcttcgttgcagcgcagttccatcctcattgaccgttcatacaaacc 18809508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 20337023 - 20337092
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| ||||||  ||||||||||||||||||||| |||||| |||| |||||||    
T  20337023 cacatgaccctcagatgaaccgcactttattgcagcgcggttccatcctcgttgaccgttcatacaaacc 20337092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 9714828 - 9714899
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacctt 77  Q
    |||||||||| ||||||| | |||||| |||||||| |||||||||||||||||||| |||| |||||||||    
T  9714828 cacatgacccccagatgacccgcactttgttgcagcacggttccatcctcattgaccgttcatacaaacctt 9714899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 37029831 - 37029897
Alignment:
Q  9 atgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||| |||||||||||||||||| ||| |||||||||||||  |||| |||||||    
T  37029831 atgaccctcagatgaattgcacttcgttgcagcgcagttacatcctcattgactgttcatacaaacc 37029897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 11719449 - 11719518
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||| |||| |||||||||||||||  ||||||||||||||| ||| |||| |||||||    
T  11719449 cacatgaccctcagaggaaccgcacttcgttgcagcatggttccatcctcattaaccgttcatacaaacc 11719518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 37884050 - 37883981
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| ||||||| |||||  ||||||||||||| ||||||| |||| |||||||    
T  37884050 cacatgaccctcagatgaaccgcacttcattgcaatgcggttccatccttattgaccgttcatacaaacc 37883981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 26279662 - 26279593
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||| || |||||||||  ||| ||||||||| || ||||||||||||||||||||||| |||||||    
T  26279662 cacatgatccccagatgaaccacacctcgttgcagtgcagttccatcctcattgaccattcatacaaacc 26279593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 37013433 - 37013364
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||| |||||||||  | |||| ||||||||||||||||||||||||| || |||| |||||||    
T  37013433 cacatgacccccagatgaaccacgcttctttgcagcgcggttccatcctcattgtccgttcatacaaacc 37013364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 20092483 - 20092414
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||    
T  20092483 cacatgaccctcagatgaaccgcacttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 20092414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 8239518 - 8239587
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||    
T  8239518 cacatgacccttagaggaaccgcacttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 8239587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 11076837 - 11076768
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || |||| |||||||    
T  11076837 cacatgaccctcagatgaaccgcacttcgttgcagcacggttccatcctcattggccgttcatacaaacc 11076768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 13545784 - 13545853
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| |||| |||||||    
T  13545784 cacatgaccctcagatgaactgcacttcgttgcaacgcggttccatcatcattaaccgttcatacaaacc 13545853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 13678689 - 13678620
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| |||| |||||||    
T  13678689 cacatgaccctcagatgaactgcacttcgttgcaacgcggttccatcatcattaaccgttcatacaaacc 13678620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 31700576 - 31700645
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || |||| |||||||    
T  31700576 cacatgaccctaagatgaaccgcacttcgttgcagcgcggttccatcctcattgtccgttcacacaaacc 31700645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 39259833 - 39259902
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||| |||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  39259833 cacatgaccctcaaatgaaccgcgcttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 39259902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 43098057 - 43098126
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | |||| |||||||    
T  43098057 cacatgaccctcagatgaaccgcacttcgttgcagcgcagttccatcctcattgatcgttcatacaaacc 43098126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 6347919 - 6347848
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacctt 77  Q
    |||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||| |||| |||||||||    
T  6347919 cacatgaccctcagatgaaccgcacttcgttgcagcactgttccatccacattgaccgttcatacaaacctt 6347848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 35683545 - 35683614
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||| |||||||||||||||  ||||||||||||||||| ||||||||||||||||| |||| |||||||    
T  35683545 cacaggaccctcagatgaaccacacttcgttgcagcgcgattccatcctcattgaccgttcatacaaacc 35683614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 42131436 - 42131502
Alignment:
Q  9 atgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||| |  || |||||||||||||||||||||||||||||| |||| |||||||    
T  42131436 atgaccctcagatgaaccgtgctccgttgcagcgcggttccatcctcattgaccgttcatacaaacc 42131502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 37098939 - 37098870
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||| |||||||||| ||||||||||| | ||| |||||||||||||||||| |||| |||||||    
T  37098939 cacatgaccttcagatgaaccgcacttcgttgtaacgcagttccatcctcattgaccgttcatacaaacc 37098870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 39318127 - 39318196
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||| ||||||||||| ||| || |||||||||||||||| |||||||||||| |||| |||||||    
T  39318127 cacatgactctcagatgaaccgcattttgttgcagcgcggttccgtcctcattgaccgttcatacaaacc 39318196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 585927 - 585995
Alignment:
Q  7 acatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||| |||||||| |||||||||||||| |||||| |||||||||||| | |||| |||||||    
T  585927 acatgacccttagatgaaccgcacttcgttgcagtgcggtttcatcctcattgatcgttcatacaaacc 585995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 627996 - 627928
Alignment:
Q  7 acatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||| |||||||| |||||||||||||| |||||| |||||||||||| | |||| |||||||    
T  627996 acatgacccttagatgaaccgcacttcgttgcagtgcggtttcatcctcattgatcgttcatacaaacc 627928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 28249338 - 28249281
Alignment:
Q  18 agatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||| |||| |||||||    
T  28249338 agatgaaccgcacttcgttgcagcacggttccatccacattgaccgttcatacaaacc 28249281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 32947628 - 32947563
Alignment:
Q  10 tgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||| |||||| ||||||| |||||||||||||||||  ||||||||| |||| |||||||    
T  32947628 tgaccctcatatgaaccgcacttcattgcagcgcggttccattttcattgaccgttcatacaaacc 32947563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 32338414 - 32338371
Alignment:
Q  32 tcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||||||||||||||||| |||| |||||||    
T  32338414 tcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 32338371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 23143670 - 23143727
Alignment:
Q  18 agatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||| |||||| | |||||||||||||||| ||||||| || |||| |||||||    
T  23143670 agatgaaccgcactttgctgcagcgcggttccattctcattgcccgttcatacaaacc 23143727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 40104780 - 40104849
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||| ||||||||||  || ||||||||||  || ||||||||||||||| | |||| |||||||    
T  40104780 cacatgaccttcagatgaaccacatttcgttgcagtacgtttccatcctcattgaacgttcatacaaacc 40104849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 23983551 - 23983620
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  23983551 cacatgaccctcaaatgaactgcacttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 23983620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 12529072 - 12529003
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| |||||||    
T  12529072 cacatgaccctcagatgaattgcacttcgtcgcagcgcggttccatcctcattgaccgttcatacaaacc 12529003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 42882130 - 42882199
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||    
T  42882130 cacatgaccctcggatgaaccgcacttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 42882199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 44497091 - 44497022
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  44497091 cacatgaccctcagatgaaccgcgcttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 44497022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 52631875 - 52631944
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||| |||||||    
T  52631875 cacatgaccctcagatgaaccgcacttcgttgcagcgcggttctatcctcattgaccgttcatacaaacc 52631944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 14586867 - 14586936
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||| |||||| |||| |||||||    
T  14586867 cacatgaccctcagatgaaccgcgcttcgttgcagcgcggttccatcctcgttgaccgttcatacaaacc 14586936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 22859277 - 22859208
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |||| |||||||    
T  22859277 cacatgaccctcagatgaaccgcacttcgttgtaacgcggttccatcctcattgaccgttcatacaaacc 22859208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 41724085 - 41724016
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||| |||||||    
T  41724085 cacatgaccctcagatgaaccgcgcttcgttgcagtgcggttccatcctcattgaccgttcatacaaacc 41724016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 41899807 - 41899876
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| |||| |||||||    
T  41899807 cacatgaccctcagatgaaccgcacttcgttgaagcgcggtttcatcctcattgaccgttcatacaaacc 41899876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 48963865 - 48963934
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||| |||| |||||||    
T  48963865 cacatgaccctcaaatgaactgtgcttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 48963934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 12700083 - 12700152
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||| |||||| || |||||||||| |||||||||||||||||||||| |||| |||||||    
T  12700083 cacatgaccctcaaatgaaccgcgcttcgttgcatcgcggttccatcctcattgaccgttcatacaaacc 12700152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 27217428 - 27217359
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||| ||||||||| ||||||  |||||||||||||||||||||||||||| |||| |||||||    
T  27217428 cacatgacccccagatgaaccgcacttttttgcagcgcggttccatcctcattgaccgttcatacaaacc 27217359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 29962004 - 29961935
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||||||||||  |||| |||||||    
T  29962004 cacatgaccctcagatgaaccacacttcgttgtagcgcggttccatcctcattgactgttcatacaaacc 29961935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 33801938 - 33801869
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||| |||| |||||||    
T  33801938 cacatgacccttagatgaaccgcgcttcgttgcagcgcggttccatccttattgaccgttcatacaaacc 33801869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 44754939 - 44755007
Alignment:
Q  7 acatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||| |||||||| || |||||||||||||| |||||||||||||||||| |||| |||||||    
T  44754939 acatgacccttagatgaaccgcgcttcgttgcagcgcagttccatcctcattgaccgttcatacaaacc 44755007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 41087023 - 41086955
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||||||  ||||||| || |||||||||||||||||||||||| |||| |||||||    
T  41087023 cacatgaccctcagatgaacctcacttcgatg-agcgcggttccatcctcattgaccgttcatacaaacc 41086955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 41091791 - 41091723
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||||||  ||||||| || |||||||||||||||||||||||| |||| |||||||    
T  41091791 cacatgaccctcagatgaacctcacttcgatg-agcgcggttccatcctcattgaccgttcatacaaacc 41091723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 38861297 - 38861230
Alignment:
Q  8 catgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||| |||| | ||||||| ||||||||| |||||||||||||||||| |||| |||||||    
T  38861297 catgaccctcatatgagccgcacttcattgcagcgcagttccatcctcattgaccgttcatacaaacc 38861230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 50261516 - 50261573
Alignment:
Q  18 agatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||| |||||| |||||||||||||| |||||||||||||| |||| |||||||    
T  50261516 agatgaaccgcactttgttgcagcgcggttacatcctcattgaccgttcatacaaacc 50261573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 37952818 - 37952764
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattga 60  Q
    |||| |||||| |||||||| ||  ||||||||||||||||||||||||||||||    
T  37952818 cacacgacccttagatgaaccgcgtttcgttgcagcgcggttccatcctcattga 37952764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 49852333 - 49852267
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaa 72  Q
    |||||||||| || |||||| ||||||| |||||||||||||||||||| | ||||| |||| ||||    
T  49852333 cacatgacccccaaatgaaccgcacttcattgcagcgcggttccatccttagtgaccgttcatacaa 49852267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 3517130 - 3517193
Alignment:
Q  12 accctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||| ||| ||  |||||||||||| ||||||||||||||||||| || | |||||||    
T  3517130 accctcagataaaccgcgtttcgttgcagcgtggttccatcctcattgaccgttaatacaaacc 3517193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 25528639 - 25528708
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| |||||||    
T  25528639 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccgtcctcattaaccgttcatacaaacc 25528708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 33951541 - 33951472
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |||||||    
T  33951541 cacatgaccctcagatgaactgcgcttcgttgtagcgcggttccatcctcattgaccgttcatacaaacc 33951472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 44866645 - 44866576
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| |||||||    
T  44866645 cacatgaccctcagatgaaccgcacttcgtagcagcgcggttccatcctcattgaccgttcatacaaacc 44866576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 43458764 - 43458695
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| |||| |||||||    
T  43458764 cacatgaccctcagatgaaccgcacctcgttgcagcgcggttccatcctcatttaccgttcatacaaacc 43458695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 34847354 - 34847421
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaa 73  Q
    |||||||||||||||||||| || |||| |||||||||||||||||||||||||||| |||| |||||    
T  34847354 cacatgaccctcagatgaaccgcgcttcattgcagcgcggttccatcctcattgaccgttcatacaaa 34847421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 14816188 - 14816249
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattca 67  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||    
T  14816188 cacatgacccttagaagaaccgcacttcgttgcagcgcggttccatcctcattgaccgttca 14816249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 15263184 - 15263245
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattca 67  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||    
T  15263184 cacatgacccttagaagaaccgcacttcgttgcagcgcggttccatcctcattgaccgttca 15263245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 35795068 - 35795001
Alignment:
Q  10 tgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacctt 77  Q
    |||||||||| ||||| | ||||||||||| |||||||||||||||||||||  |||| |||||||||    
T  35795068 tgaccctcaggtgaaccgtacttcgttgcaacgcggttccatcctcattgactgttcatacaaacctt 35795001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 46255468 - 46255403
Alignment:
Q  10 tgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||| || |||||||| |||| ||||||||||||||| ||| |||| |||||||    
T  46255468 tgaccctcagatgaaccgcgcttcgttgaagcgtggttccatcctcattaaccgttcatacaaacc 46255403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 36311618 - 36311679
Alignment:
Q  14 cctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||| || |||||||||||||| ||| |||||||||| ||| |||| |||||||    
T  36311618 cctcagatgaaccgcgcttcgttgcagcgcagtttcatcctcattaaccgttcatacaaacc 36311679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 11975592 - 11975523
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| || | |||||||    
T  11975592 cacatgaccctcagatgaactgcgcttcgttgtagcgcggttccatcctcattgacctttaatacaaacc 11975523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 16395927 - 16395858
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |||| |||||||    
T  16395927 cacatgaccctcagatgaaccgcgcttcgttgcagcgcgtttccatcctcattgaccgttcatacaaacc 16395858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 31722424 - 31722493
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||| |||| |||||||    
T  31722424 cacatgaccctcaaatgaaccgcgcttcgttgcagcgaggttccatcctcattgaccgttcatacaaacc 31722493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 439622 - 439562
Alignment:
Q  15 ctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||| || |||||||||||||||||| |||||||||||||| |||| |||||||    
T  439622 ctcagatgaaccgcgcttcgttgcagcgcggtttcatcctcattgaccgttcatacaaacc 439562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 304363 - 304294
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    ||||||||||| |||| ||| || |||||||||| |||||||||||||||||||||  |||| |||||||    
T  304363 cacatgacccttagataaaccgcgcttcgttgcaacgcggttccatcctcattgactgttcatacaaacc 304294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 1115710 - 1115641
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||| |||| |||||||    
T  1115710 cacatgaccctcagatgaatcgcacttcgttgcagcgcggttctatcctcattgaccgttcatacaaacc 1115641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 30490299 - 30490360
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattca 67  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||    
T  30490299 cacatgaccctcagatgaaccgcgcttcgttgcagcgcggttccatcctcattgaccgttca 30490360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 38208938 - 38208869
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| |||| |||||||    
T  38208938 cacatgaccctcagatgaaccgcgcttcgttgcagcgcggttccatccttattgaccgttcatacaaacc 38208869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 44760653 - 44760584
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |||| |||||||    
T  44760653 cacatgaccctcagatgaactgcaatttgctgcagcgcggttccatcctcattgaccgttcatacaaacc 44760584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 45117685 - 45117624
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattca 67  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  45117685 cacatgaccctcaaatgaaccgcacttcgttgcagcgcggttccatcctcattgaccgttca 45117624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 17137233 - 17137288
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgac 61  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  17137233 cacatgaccctcagatgaactgcgcttcgttgcaacgcggttccatcctcattgac 17137288  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 15912317 - 15912248
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || ||| |||||||||| |||||||||||||||||| |||| |||||||    
T  15912317 cacatgaccctcagatgaaccgcgctttgttgcagcgcagttccatcctcattgaccgttcatacaaacc 15912248  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 45234835 - 45234766
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||| || ||| ||||||||| ||||||||||||||||||| |||| |||||||    
T  45234835 cacatgaccctcagatgaaccgcgctttgttgcagcgtggttccatcctcattgaccgttcatacaaacc 45234766  T

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Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 1209446 - 1209517
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacctt 77  Q
    |||||||||| || |||||| |||||| ||||||||||||||||||||||||| ||| |||| |||||||||    
T  1209446 cacatgacccacaaatgaaccgcactttgttgcagcgcggttccatcctcatttaccgttcatacaaacctt 1209517  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 7941062 - 7941125
Alignment:
Q  9 atgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaa 72  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||||||||| |||| ||||    
T  7941062 atgacccccagatgaatcgcacttcgttgcagcgcggttccatcctcattgaccgttcatacaa 7941125  T

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Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 38703116 - 38703183
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaa 73  Q
    ||||||||| |||||||||| || ||||||||||||||||||||||||||||| ||| |||| |||||    
T  38703116 cacatgaccttcagatgaaccgcgcttcgttgcagcgcggttccatcctcattaaccgttcatacaaa 38703183  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 17309542 - 17309498
Alignment:
Q  31 ttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||||||||||||||||||||||||| |||| |||||||    
T  17309542 ttcgttgcagcgcggttccatcctcattgaccgttcatacaaacc 17309498  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 16415105 - 16415042
Alignment:
Q  14 cctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacctt 77  Q
    |||||||||||| || |||| ||||||||||||||||||| |||||||| |||| |||| ||||    
T  16415105 cctcagatgaaccgcccttctttgcagcgcggttccatccccattgaccgttcatacaatcctt 16415042  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 16251722 - 16251792
Alignment:
Q  7 acatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacctt 77  Q
    |||||||||  |||||||| ||||||| ||||||||||||||||| | |||||||| |||| |||| ||||    
T  16251722 acatgacccctagatgaaccgcacttctttgcagcgcggttccattcccattgaccgttcatacaatcctt 16251792  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 31993608 - 31993676
Alignment:
Q  6 cacatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||| || |||||| |||||| | ||||||||||||||||  ||||||||| |||| |||||||    
T  31993608 cacatgaccc-catatgaaccgcactttggtgcagcgcggttccattttcattgaccgttcatacaaacc 31993676  T

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Target: scaffold0121 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 46976 - 47033
Alignment:
Q  20 atgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacctt 77  Q
    |||||| ||||||| |||||| ||||||||||||||||||||| |||| |||||||||    
T  46976 atgaaccgcacttctttgcagtgcggttccatcctcattgaccgttcatacaaacctt 47033  T

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Target: scaffold0209 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 14688 - 14756
Alignment:
Q  7 acatgaccctcagatgaactgcacttcgttgcagcgcggttccatcctcattgaccattcagacaaacc 75  Q
    |||||||||  |||||||| ||||||||||||||  ||||| |||||||||||| | |||| |||||||    
T  14688 acatgacccctagatgaaccgcacttcgttgcagtacggtttcatcctcattgatcgttcatacaaacc 14756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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